Gene: B3galt9 (beta-1,3-galactosyltransferase 9) Rattus norvegicus
Analyze
Symbol:
B3galt9
Name:
beta-1,3-galactosyltransferase 9
RGD ID:
9424697
Description:
Type:
protein-coding
RefSeq Status:
MODEL
Also known as:
B3gnt10; LOC103691796; putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842; putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842 homolog; putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC402377; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase
RGD Orthologs
Alliance Genes
More Info
more info ...
More Info
Latest Assembly:
Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl mRatBN7.2 3 18,120,861 - 18,124,642 (+) NCBI Rnor_6.0 3 13,904,171 - 13,906,523 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Celera 3 12,842,769 - 12,845,120 (+) NCBI Celera Cytogenetic Map 3 p11 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Genomics
Comparative Map Data
B3galt9 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl mRatBN7.2 3 18,120,861 - 18,124,642 (+) NCBI Rnor_6.0 3 13,904,171 - 13,906,523 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Celera 3 12,842,769 - 12,845,120 (+) NCBI Celera Cytogenetic Map 3 p11 NCBI
B3GALT9 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38.p13 Ensembl 9 120,792,403 - 120,799,918 (+) Ensembl GRCh38 hg38 GRCh38 GRCh38 9 120,793,467 - 120,801,787 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh37 9 123,555,775 - 123,561,009 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 GRCh37 9 123,555,745 - 123,564,065 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Celera 9 94,204,054 - 94,209,288 (+) NCBI Cytogenetic Map 9 q33.2 NCBI HuRef 9 93,173,737 - 93,178,963 (+) NCBI HuRef CHM1_1 9 123,702,918 - 123,708,152 (+) NCBI CHM1_1
Gm34653 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 34,716,293 - 34,729,743 (+) NCBI GRCm39 mm39 GRCm38 2 34,826,316 - 34,839,731 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 34,833,007 - 34,839,728 (+) Ensembl GRCm38 mm10 GRCm38 Celera 2 34,526,507 - 34,539,570 (+) NCBI Celera Cytogenetic Map 2 B NCBI
B3GALT9 Vervet Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 12 18,782,034 - 18,789,125 (-) NCBI
QTLs in Region (Rnor_6.0)
631679 Cm10 Cardiac mass QTL 10 7.34 0.0001 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 3 1 25786001 Rat 70202 Alc19 Alcohol consumption QTL 19 2.5 drinking behavior trait (VT:0001422) ethanol intake volume to total fluid intake volume ratio (CMO:0001591) 3 1 28136884 Rat 631545 Bp85 Blood pressure QTL 85 3.1 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 3 1 28500807 Rat 61468 Bp15 Blood pressure QTL 15 4.4 blood pressure trait (VT:0000183) diastolic blood pressure (CMO:0000005) 3 1 28500807 Rat 61468 Bp15 Blood pressure QTL 15 4.4 blood pressure trait (VT:0000183) systolic blood pressure (CMO:0000004) 3 1 28500807 Rat 61468 Bp15 Blood pressure QTL 15 4.4 blood pressure trait (VT:0000183) pulse pressure (CMO:0000292) 3 1 28500807 Rat 631831 Alc8 Alcohol consumption QTL 8 2.7 consumption behavior trait (VT:0002069) calculated ethanol drink intake rate (CMO:0001615) 3 1 32972944 Rat 4889966 Bss95 Bone structure and strength QTL 95 4.4 tibia area (VT:1000281) tibia-fibula cross-sectional area (CMO:0001718) 3 1 37891710 Rat 2312664 Scl62 Serum cholesterol level QTL 62 0.05 blood cholesterol amount (VT:0000180) serum total cholesterol level (CMO:0000363) 3 1 39773425 Rat 2290452 Scl56 Serum cholesterol level QTL 56 2.26 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 3 1 95176874 Rat 1298526 Arunc3 Aerobic running capacity QTL 3 2.2 exercise endurance trait (VT:0002332) maximum distance run on treadmill (CMO:0001406) 3 2631421 33477544 Rat 10401810 Kidm53 Kidney mass QTL 53 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 3 2631421 48562146 Rat 70203 Gcr2 Gastric cancer resistance QTL 2 2.6 stomach morphology trait (VT:0000470) stomach tumor susceptibility score (CMO:0002043) 3 3285929 28136884 Rat 1358357 Srcrtb1 Stress Responsive Cort Basal QTL 1 6.36 0.002 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 3 3285929 28136884 Rat 8693641 Alc30 Alcohol consumption QTL 30 2 0.739 drinking behavior trait (VT:0001422) calculated ethanol drink intake rate (CMO:0001615) 3 5654639 25105730 Rat 1558654 Bw56 Body weight QTL 56 4.5 0.0000171 body mass (VT:0001259) body weight (CMO:0000012) 3 6000748 34394365 Rat 6893355 Bw101 Body weight QTL 101 0.4 0.38 body mass (VT:0001259) body weight (CMO:0000012) 3 6000748 34394365 Rat 6893363 Bw105 Body weight QTL 105 2.6 0.0036 body mass (VT:0001259) body weight (CMO:0000012) 3 6000748 34394365 Rat 70191 BpQTLcluster4 Blood pressure QTL cluster 4 3 arterial blood pressure trait (VT:2000000) absolute change in mean arterial blood pressure (CMO:0000533) 3 6000748 51687917 Rat 70191 BpQTLcluster4 Blood pressure QTL cluster 4 3 arterial blood pressure trait (VT:2000000) absolute change in systolic blood pressure (CMO:0000607) 3 6000748 51687917 Rat 1558647 Cm46 Cardiac mass QTL 46 5.4 0.0000055 heart mass (VT:0007028) heart wet weight (CMO:0000069) 3 6000866 34394121 Rat 1558650 Cm48 Cardiac mass QTL 48 4 0.0001 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 3 6000866 34394121 Rat 1558657 Cm43 Cardiac mass QTL 43 6.6 0.0000000293 heart mass (VT:0007028) heart wet weight (CMO:0000069) 3 6000866 34394121 Rat 1358905 Hrtrt17 Heart rate QTL 17 5.9 0.000014 heart pumping trait (VT:2000009) heart rate (CMO:0000002) 3 10094081 93415837 Rat 2298542 Neuinf11 Neuroinflammation QTL 11 3.9 nervous system integrity trait (VT:0010566) spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126) 3 10119318 79772001 Rat 1358885 Bp251 Blood pressure QTL 251 3.8 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 3 10639528 127023997 Rat 1358888 Bp264 Blood pressure QTL 264 4.43 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 3 10639528 127023997 Rat 11528620 Bss113 Bone structure and strength QTL 113 9.75 0.00000000017 femur morphology trait (VT:0000559) femoral neck width (CMO:0001695) 3 12236221 15217668 Rat 634306 Bp140 Blood pressure QTL 140 3.3 0.0013 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 3 13126914 36600143 Rat 634306 Bp140 Blood pressure QTL 140 3.3 0.0013 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 3 13126914 36600143 Rat 634306 Bp140 Blood pressure QTL 140 3.3 0.0013 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 3 13126914 36600143 Rat 634306 Bp140 Blood pressure QTL 140 3.3 0.0013 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 3 13126914 36600143 Rat 634306 Bp140 Blood pressure QTL 140 3.3 0.0013 arterial blood pressure trait (VT:2000000) heart rate (CMO:0000002) 3 13126914 36600143 Rat 634306 Bp140 Blood pressure QTL 140 3.3 0.0013 arterial blood pressure trait (VT:2000000) heart rate (CMO:0000002) 3 13126914 36600143 Rat 634306 Bp140 Blood pressure QTL 140 3.3 0.0013 arterial blood pressure trait (VT:2000000) body weight (CMO:0000012) 3 13126914 36600143 Rat 634306 Bp140 Blood pressure QTL 140 3.3 0.0013 arterial blood pressure trait (VT:2000000) body weight (CMO:0000012) 3 13126914 36600143 Rat 631568 Bp92 Blood pressure QTL 92 2.2 0.005 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 3 13126914 41510346 Rat
Expression
Sequence
Reference Sequences
RefSeq Acc Id:
XM_008761826 ⟹ XP_008760048
RefSeq Status:
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Rnor_6.0 3 13,904,171 - 13,906,523 (+) NCBI
Sequence:
ATGCAGGTGACGCTCTGCCGACTTCGGACTCACCAGTGGTGTTTCCTCCTCTTTAACGTCGTAC
hide sequence
RefSeq Acc Id:
XM_008775354 ⟹ XP_008773576
RefSeq Status:
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source Celera 3 12,842,769 - 12,845,120 (+) NCBI
Sequence:
ATGCAGGTGACGCTCTGCCGACTTCGGACTCACCAGTGGTGTTTCCTCCTCTTTAACGTCGTAC
hide sequence
RefSeq Acc Id:
XM_039106217 ⟹ XP_038962145
RefSeq Status:
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 3 18,120,861 - 18,124,642 (+) NCBI
Reference Sequences
RefSeq Acc Id:
XP_008773576 ⟸ XM_008775354
- Sequence:
MQVTLCRLRTHQWCFLLFNVVLFHVLLFGADFVEEYFLRSLPRVDMKILSIKNKARKLNLEPLR
hide sequence
RefSeq Acc Id:
XP_008760048 ⟸ XM_008761826
- Sequence:
MQVTLCRLRTHQWCFLLFNVVLFHVLLFGADFVEEYFLRSLPRVDMKILSIKNKARKLNLEPLR
hide sequence
RefSeq Acc Id:
XP_038962145 ⟸ XM_039106217
Strain Variation
Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Medical College of Wisconsin
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Sequenced By:
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:
SOLiD 4 and 5500
Secondary Analysis:
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:
National Institutes of Health
Description:
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Sequenced By:
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:
SOLiD 4 and 5500
Secondary Analysis:
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:
National Institutes of Health
Description:
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Sequenced By:
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:
SOLiD 4 and 5500
Secondary Analysis:
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:
National Institutes of Health
Description:
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Charles River Laboratories
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Sequenced By:
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:
SOLiD 4 and 5500
Secondary Analysis:
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:
National Institutes of Health
Description:
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Medical College of Wisconsin
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Medical College of Wisconsin
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Medical College of Wisconsin
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Sequenced By:
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:
SOLiD 4 and 5500
Secondary Analysis:
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:
National Institutes of Health
Description:
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Sequenced By:
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:
SOLiD 4 and 5500
Secondary Analysis:
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:
National Institutes of Health
Description:
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Medical College of Wisconsin
Description:
SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Medical College of Wisconsin
Description:
SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Harlan Laboratories
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.7.7 and GATK v3.2-2
Breeder:
Medical College of Wisconsin
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Sequenced By:
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:
SOLiD 4 and 5500
Secondary Analysis:
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:
National Institutes of Health
Description:
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA mem 0.7.15, GATK v.3.6-0
Description:
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Sequenced By:
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:
SOLiD 4 and 5500
Secondary Analysis:
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:
National Institutes of Health
Description:
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Additional Information
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2020-10-27
B3galt9
beta-1,3-galactosyltransferase 9
B3gnt10
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2020-09-08
B3gnt10
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase
LOC103691796
putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC402377
Name and Symbol changed
629549 APPROVED
2014-08-25
LOC103691796
putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC402377
Symbol and Name status set to provisional
70820 PROVISIONAL
