Golga2 (golgin A2) - Rat Genome Database

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Gene: Golga2 (golgin A2) Rattus norvegicus
Analyze
Symbol: Golga2
Name: golgin A2
RGD ID: 620282
Description: Enables importin-alpha family protein binding activity and protein kinase binding activity. Involved in several processes, including Golgi disassembly; mitotic spindle assembly; and protein homotetramerization. Located in Golgi apparatus and neuronal cell body. Part of protein-containing complex. Orthologous to several human genes including GOLGA2 (golgin A2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 130 kDa cis-Golgi matrix protein; cis-Golgi matrix protein GM130; Gm130; golgi autoantigen, golgin subfamily a, 2; golgin subfamily A member 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2315,583,862 - 15,604,279 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl315,584,039 - 15,604,279 (+)Ensembl
Rnor_6.0311,317,328 - 11,337,569 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,317,183 - 11,336,458 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,666,198 - 16,686,439 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,412,088 - 11,434,260 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1311,308,459 - 11,330,632 (+)NCBI
Celera310,328,596 - 10,348,889 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
1. Alvarez C, etal., J Biol Chem. 2001 Jan 26;276(4):2693-700. Epub 2000 Oct 16.
2. Chiu CF, etal., EMBO J. 2008 Apr 9;27(7):934-47. doi: 10.1038/emboj.2008.40. Epub 2008 Mar 6.
3. Fritzler MJ, etal., J Exp Med. 1993 Jul 1;178(1):49-62.
4. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Greaves J, etal., Mol Biol Cell. 2011 Jun 1;22(11):1887-95. doi: 10.1091/mbc.E10-11-0924. Epub 2011 Apr 6.
6. Ishida R, etal., FEBS J. 2015 Jun;282(11):2232-44. doi: 10.1111/febs.13271. Epub 2015 Apr 11.
7. Lowe M, etal., Cell 1998 Sep 18;94(6):783-93.
8. Lowe M, etal., J Cell Biol. 2000 Apr 17;149(2):341-56.
9. Nakamura N, etal., Cell 1997 May 2;89(3):445-55.
10. Nakamura N, etal., J Cell Biol 1995 Dec;131(6 Pt 2):1715-26.
11. NCBI rat LocusLink and RefSeq merged data July 26, 2002
12. Preisinger C, etal., J Cell Biol. 2004 Mar 29;164(7):1009-20. Epub 2004 Mar 22.
13. Rezvani K, etal., J Neurosci. 2009 May 27;29(21):6883-96. doi: 10.1523/JNEUROSCI.4723-08.2009.
14. RGD automated data pipeline
15. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. RGD automated import pipeline for gene-chemical interactions
17. RGD comprehensive gene curation
18. Sannerud R, etal., Mol Biol Cell. 2006 Apr;17(4):1514-26. Epub 2006 Jan 18.
19. Schug N, etal., Eur J Neurosci. 2006 Dec;24(12):3372-80.
20. Seemann J, etal., Mol Biol Cell. 2000 Feb;11(2):635-45.
21. Short B, etal., J Cell Biol. 2001 Dec 10;155(6):877-83. Epub 2001 Dec 10.
22. Shorter J, etal., EMBO J 1999 Sep 15;18(18):4949-60.
23. Shorter J, etal., J Cell Biol 2002 Apr 1;157(1):45-62.
24. Tiwari A, etal., J Cell Sci. 2013 May 1;126(Pt 9):1962-8. doi: 10.1242/jcs.117374. Epub 2013 Feb 26.
25. Vivero-Salmeron G, etal., Histochem Cell Biol. 2008 Oct;130(4):709-17. Epub 2008 Jul 22.
26. Wei JH, etal., Cell. 2015 Jul 16;162(2):287-99. doi: 10.1016/j.cell.2015.06.014. Epub 2015 Jul 9.
27. Yoshimura SI, etal., J Cell Sci. 2001 Nov;114(Pt 22):4105-15.
Additional References at PubMed
PMID:8889548   PMID:11784862   PMID:12646573   PMID:14622145   PMID:14718562   PMID:14728599   PMID:15078902   PMID:15229288   PMID:15452145   PMID:15800058   PMID:16336229   PMID:16399995  
PMID:16413118   PMID:16489344   PMID:16778019   PMID:17003038   PMID:17036164   PMID:17046993   PMID:17204322   PMID:17314401   PMID:17488291   PMID:17724343   PMID:17765678   PMID:18045989  
PMID:18166528   PMID:18167358   PMID:19061864   PMID:19109421   PMID:19187565   PMID:19242490   PMID:19956733   PMID:20332113   PMID:20368623   PMID:20421892   PMID:20605918   PMID:20699666  
PMID:20943658   PMID:21111240   PMID:21187406   PMID:21300694   PMID:21525244   PMID:21552007   PMID:21606205   PMID:21640725   PMID:22735382   PMID:22792322   PMID:22802641   PMID:22841714  
PMID:23814182   PMID:23918928   PMID:23926254   PMID:24367100   PMID:24648492   PMID:25468996   PMID:26582200   PMID:27107012   PMID:27655914   PMID:29437892   PMID:29568061   PMID:30053369  


Genomics

Comparative Map Data
Golga2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2315,583,862 - 15,604,279 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl315,584,039 - 15,604,279 (+)Ensembl
Rnor_6.0311,317,328 - 11,337,569 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,317,183 - 11,336,458 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,666,198 - 16,686,439 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,412,088 - 11,434,260 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1311,308,459 - 11,330,632 (+)NCBI
Celera310,328,596 - 10,348,889 (+)NCBICelera
Cytogenetic Map3p12NCBI
GOLGA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9128,255,829 - 128,275,995 (-)EnsemblGRCh38hg38GRCh38
GRCh389128,255,829 - 128,276,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379131,018,108 - 131,038,231 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,057,929 - 130,078,089 (-)NCBINCBI36hg18NCBI36
Build 349128,097,662 - 128,117,822NCBI
Celera9101,669,012 - 101,689,172 (-)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9100,631,562 - 100,651,722 (-)NCBIHuRef
CHM1_19131,169,131 - 131,189,291 (-)NCBICHM1_1
Golga2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,178,299 - 32,197,925 (+)NCBIGRCm39mm39
GRCm39 Ensembl232,177,396 - 32,197,933 (+)Ensembl
GRCm38232,288,287 - 32,307,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,287,384 - 32,307,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,143,773 - 32,163,441 (+)NCBIGRCm37mm9NCBIm37
MGSCv36232,109,393 - 32,129,930 (+)NCBImm8
Celera231,992,729 - 32,012,412 (+)NCBICelera
Cytogenetic Map2BNCBI
Golga2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955570782,218 - 799,044 (-)NCBIChiLan1.0ChiLan1.0
GOLGA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,045,805 - 128,065,200 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,047,056 - 128,065,137 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0999,376,847 - 99,397,128 (-)NCBIMhudiblu_PPA_v0panPan3
GOLGA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,234,836 - 55,251,698 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,429,688 - 54,446,610 (+)NCBI
ROS_Cfam_1.0956,156,848 - 56,173,782 (+)NCBI
UMICH_Zoey_3.1954,916,750 - 54,933,678 (+)NCBI
UNSW_CanFamBas_1.0955,231,389 - 55,248,316 (+)NCBI
UU_Cfam_GSD_1.0955,322,893 - 55,339,826 (+)NCBI
Golga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,030,098 - 196,045,856 (-)NCBI
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11268,702,823 - 268,721,174 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,693,900 - 302,710,489 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,852,442 - 9,873,536 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl129,852,461 - 9,873,767 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660796,359,761 - 6,380,755 (-)NCBIVero_WHO_p1.0
Golga2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247606,588,351 - 6,605,518 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH128357  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,603,984 - 15,604,169 (+)MAPPERmRatBN7.2
Rnor_6.0311,337,275 - 11,337,459NCBIRnor6.0
Rnor_5.0316,686,145 - 16,686,329UniSTSRnor5.0
RGSC_v3.4311,433,970 - 11,434,154UniSTSRGSC3.4
Celera310,348,595 - 10,348,779UniSTS
RH 3.4 Map360.4UniSTS
Cytogenetic Map3p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:202
Count of miRNA genes:117
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000016341
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 56 40 19 40 8 11 74 35 41 11 8
Low 1 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA899518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ746344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN805702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN805927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ147221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U35022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000016341   ⟹   ENSRNOP00000016341
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,584,039 - 15,604,275 (+)Ensembl
Rnor_6.0 Ensembl311,317,328 - 11,336,379 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091171   ⟹   ENSRNOP00000074890
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,584,075 - 15,604,279 (+)Ensembl
Rnor_6.0 Ensembl311,317,183 - 11,336,458 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095262   ⟹   ENSRNOP00000080186
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,584,075 - 15,604,279 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100279   ⟹   ENSRNOP00000087352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,584,075 - 15,604,279 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106907   ⟹   ENSRNOP00000078482
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,587,490 - 15,604,275 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112704   ⟹   ENSRNOP00000079188
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,587,645 - 15,604,279 (+)Ensembl
RefSeq Acc Id: NM_022596   ⟹   NP_072118
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,584,039 - 15,604,279 (+)NCBI
Rnor_6.0311,317,328 - 11,337,569 (+)NCBI
Rnor_5.0316,666,198 - 16,686,439 (+)NCBI
RGSC_v3.4311,412,088 - 11,434,260 (+)RGD
Celera310,328,596 - 10,348,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233992   ⟹   XP_006234054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,604,279 (+)NCBI
Rnor_6.0311,317,351 - 11,336,373 (+)NCBI
Rnor_5.0316,666,198 - 16,686,439 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233993   ⟹   XP_006234055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,602,970 (+)NCBI
Rnor_6.0311,317,351 - 11,336,373 (+)NCBI
Rnor_5.0316,666,198 - 16,686,439 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233994   ⟹   XP_006234056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,604,279 (+)NCBI
Rnor_6.0311,317,351 - 11,336,373 (+)NCBI
Rnor_5.0316,666,198 - 16,686,439 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233995   ⟹   XP_006234057
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,604,279 (+)NCBI
Rnor_6.0311,317,351 - 11,336,373 (+)NCBI
Rnor_5.0316,666,198 - 16,686,439 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233996   ⟹   XP_006234058
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,604,279 (+)NCBI
Rnor_6.0311,317,351 - 11,336,373 (+)NCBI
Rnor_5.0316,666,198 - 16,686,439 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233997   ⟹   XP_006234059
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,602,970 (+)NCBI
Rnor_6.0311,317,351 - 11,336,373 (+)NCBI
Rnor_5.0316,666,198 - 16,686,439 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233998   ⟹   XP_006234060
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,584,045 - 15,603,449 (+)NCBI
Rnor_6.0311,317,351 - 11,336,373 (+)NCBI
Rnor_5.0316,666,198 - 16,686,439 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592025   ⟹   XP_017447514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,584,128 - 15,604,279 (+)NCBI
Rnor_6.0311,317,467 - 11,336,373 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105792   ⟹   XP_038961720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,602,970 (+)NCBI
RefSeq Acc Id: XM_039105793   ⟹   XP_038961721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,604,279 (+)NCBI
RefSeq Acc Id: XM_039105794   ⟹   XP_038961722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,602,970 (+)NCBI
RefSeq Acc Id: XM_039105795   ⟹   XP_038961723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,602,970 (+)NCBI
RefSeq Acc Id: XM_039105796   ⟹   XP_038961724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,583,862 - 15,602,970 (+)NCBI
RefSeq Acc Id: XM_039105797   ⟹   XP_038961725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2315,584,247 - 15,604,279 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_072118   ⟸   NM_022596
- UniProtKB: Q62839 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234060   ⟸   XM_006233998
- Peptide Label: isoform X8
- UniProtKB: Q62839 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234054   ⟸   XM_006233992
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006234055   ⟸   XM_006233993
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K977 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234056   ⟸   XM_006233994
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006234058   ⟸   XM_006233996
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006234057   ⟸   XM_006233995
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006234059   ⟸   XM_006233997
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017447514   ⟸   XM_017592025
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: ENSRNOP00000016341   ⟸   ENSRNOT00000016341
RefSeq Acc Id: ENSRNOP00000074890   ⟸   ENSRNOT00000091171
RefSeq Acc Id: XP_038961721   ⟸   XM_039105793
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038961720   ⟸   XM_039105792
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038961722   ⟸   XM_039105794
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038961723   ⟸   XM_039105795
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038961724   ⟸   XM_039105796
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038961725   ⟸   XM_039105797
- Peptide Label: isoform X13
RefSeq Acc Id: ENSRNOP00000080186   ⟸   ENSRNOT00000095262
RefSeq Acc Id: ENSRNOP00000078482   ⟸   ENSRNOT00000106907
RefSeq Acc Id: ENSRNOP00000087352   ⟸   ENSRNOT00000100279
RefSeq Acc Id: ENSRNOP00000079188   ⟸   ENSRNOT00000112704
Protein Domains
GOLGA2L5

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691981
Promoter ID:EPDNEW_R2506
Type:multiple initiation site
Name:Golga2_1
Description:golgin A2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0311,317,398 - 11,317,458EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620282 AgrOrtholog
Ensembl Genes ENSRNOG00000011884 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000016341 UniProtKB/TrEMBL
  ENSRNOP00000074890 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016341 UniProtKB/TrEMBL
  ENSRNOT00000091171 UniProtKB/TrEMBL
InterPro GM130_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLGA_cons_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Golgin_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64528 UniProtKB/Swiss-Prot
NCBI Gene 64528 ENTREZGENE
PANTHER PTHR10881 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GM130_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GOLGA2L5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB GOLGA2 RGD
PhenoGen Golga2 PhenoGen
UniProt A0A0G2K977 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAB6_RAT UniProtKB/TrEMBL
  GOGA2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary F1LSS0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Golga2  golgin A2  Golga2  golgi autoantigen, golgin subfamily a, 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Golga2  golgi autoantigen, golgin subfamily a, 2  Golga2  cis-Golgi matrix protein GM130  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Golga2  cis-Golgi matrix protein GM130  Gm130    Symbol and Name updated 1299863 APPROVED
2002-08-07 Gm130  cis-Golgi matrix protein GM130      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to the cis-Golgi network 632909