Pomt1 (protein-O-mannosyltransferase 1)

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Gene: Pomt1 (protein-O-mannosyltransferase 1) Rattus norvegicus

Analyze

Symbol:

Pomt1

Name:

protein-O-mannosyltransferase 1

RGD ID:

620078

Description:

Predicted to enable mannosyltransferase activity. Involved in positive regulation of protein O-linked glycosylation. Predicted to be located in acrosomal vesicle; endoplasmic reticulum membrane; and sarcoplasmic reticulum. Human ortholog(s) of this gene implicated in cardiomyopathy; cleft lip; lissencephaly; and muscular dystrophy (multiple). Orthologous to human POMT1 (protein O-mannosyltransferase 1); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5-triiodo-L-thyronine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

dolichyl-phosphate-mannose--protein mannosyltransferase 1; protein O-mannosyl-transferase 1; protein O-mannosyltransferase 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	POMT1 (protein O-mannosyltransferase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pomt1 (protein-O-mannosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pomt1 (protein O-mannosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	POMT1 (protein O-mannosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	POMT1 (protein O-mannosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pomt1 (protein O-mannosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	POMT1 (protein O-mannosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	POMT1 (protein O-mannosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pomt1 (protein O-mannosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Pomt1 (protein-O-mannosyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	POMT1 (protein O-mannosyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pomt1 (protein-O-mannosyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PMT4	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	rt	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pomt1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	15,520,717 - 15,538,579 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,520,481 - 15,538,581 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	18,590,099 - 18,607,991 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	27,175,092 - 27,192,984 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	25,425,586 - 25,443,460 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	11,253,424 - 11,271,873 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	11,254,026 - 11,271,872 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	16,602,808 - 16,620,746 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	11,348,786 - 11,366,633 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	11,245,184 - 11,263,006 (+)	NCBI
Celera	3	10,265,600 - 10,283,445 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autosomal recessive limb-girdle muscular dystrophy (ISO)

autosomal recessive limb-girdle muscular dystrophy type 2K (ISO)

cardiomyopathy (ISO)

cerebellar ataxia (ISO)

cleft lip (ISO)

congenital muscular dystrophy (ISO)

congenital muscular dystrophy-dystroglycanopathy type A1 (ISO)

Ehlers-Danlos syndrome classic type 1 (ISO)

epilepsy (ISO)

genetic disease (ISO)

hydrocephalus (ISO)

intellectual disability (ISO)

lissencephaly (ISO)

muscular dystrophy (ISO)

muscular dystrophy-dystroglycanopathy type B1 (ISO)

muscular dystrophy-dystroglycanopathy type C12 (ISO)

Nervous System Malformations (ISO)

Neurodevelopmental Disorders (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

pyridoxine-dependent epilepsy (ISO)

Ventriculomegaly (ISO)

Walker-Warburg syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,3',5-triiodo-L-thyronine (EXP)

4,4'-diaminodiphenylmethane (ISO)

acrolein (ISO)

actinomycin D (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

diarsenic trioxide (ISO)

epoxiconazole (ISO)

ferroheme b (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

heme b (ISO)

N-ethyl-N-nitrosourea (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

simvastatin (ISO)

Soman (EXP)

temozolomide (ISO)

titanium dioxide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

extracellular matrix organization (ISO)

positive regulation of protein O-linked glycosylation (IDA)

protein O-linked mannosylation (IEA,ISO,ISS)

Cellular Component

acrosomal vesicle (ISO)

endoplasmic reticulum membrane (IEA,ISO,ISS)

sarcoplasmic reticulum (ISO)

Molecular Function

dolichyl-phosphate-mannose-protein mannosyltransferase activity (IEA)

mannosyltransferase activity (ISO,ISS)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Cardiomyopathy in patients with POMT1-related congenital and limb-girdle muscular dystrophy.	Bello L, etal., Eur J Hum Genet. 2012 Dec;20(12):1234-9. doi: 10.1038/ejhg.2012.71. Epub 2012 May 2.
2.	Mutations in the O-mannosyltransferase gene POMT1 give rise to the severe neuronal migration disorder Walker-Warburg syndrome.	Beltran-Valero de Bernabe D, etal., Am J Hum Genet 2002 Nov;71(5):1033-43.
3.	Molecular heterogeneity in fetal forms of type II lissencephaly.	Bouchet C, etal., Hum Mutat. 2007 Oct;28(10):1020-7.
4.	Mutations in POMT1 are found in a minority of patients with Walker-Warburg syndrome.	Currier SC, etal., Am J Med Genet A. 2005 Feb 15;133A(1):53-7.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
7.	Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1.	Jurado LA, etal., Genomics 1999 Jun 1;58(2):171-80.
8.	Molecular cloning and characterization of rat Pomt1 and Pomt2.	Manya H, etal., Glycobiology. 2006 Sep;16(9):863-73. Epub 2006 May 16.
9.	Demonstration of mammalian protein O-mannosyltransferase activity: coexpression of POMT1 and POMT2 required for enzymatic activity.	Manya H, etal., Proc Natl Acad Sci U S A 2004 Jan 13;101(2):500-5. Epub 2003 Dec 29.
10.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
11.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
12.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
13.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
14.	GOA pipeline	RGD automated data pipeline
15.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
17.	Comprehensive gene review and curation	RGD comprehensive gene curation
18.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
19.	Walker-Warburg Syndrome with POMT1 mutations can be associated with cleft lip and cleft palate.	Vajsar J, etal., Neuromuscul Disord. 2008 Aug;18(8):675-7. doi: 10.1016/j.nmd.2008.05.014. Epub 2008 Jul 18.
20.	The expanding phenotype of POMT1 mutations: from Walker-Warburg syndrome to congenital muscular dystrophy, microcephaly, and mental retardation.	van Reeuwijk J, etal., Hum Mutat. 2006 May;27(5):453-9.

Additional References at PubMed

PMID:15383666	PMID:15489334	PMID:17456771	PMID:28512129

Genomics

Comparative Map Data

Pomt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	15,520,717 - 15,538,579 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,520,481 - 15,538,581 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	18,590,099 - 18,607,991 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	27,175,092 - 27,192,984 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	25,425,586 - 25,443,460 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	11,253,424 - 11,271,873 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	11,254,026 - 11,271,872 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	16,602,808 - 16,620,746 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	11,348,786 - 11,366,633 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	11,245,184 - 11,263,006 (+)	NCBI
Celera	3	10,265,600 - 10,283,445 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

POMT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	131,502,918 - 131,523,799 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	131,502,789 - 131,523,806 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	134,378,305 - 134,399,186 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	133,368,110 - 133,389,014 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	131,407,865 - 131,428,746	NCBI
Celera	9	104,918,461 - 104,939,373 (+)	NCBI		Celera
Cytogenetic Map	9	q34.13	NCBI
HuRef	9	103,872,837 - 103,893,810 (+)	NCBI		HuRef
CHM1_1	9	134,527,759 - 134,548,591 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	143,715,812 - 143,736,761 (+)	NCBI		T2T-CHM13v2.0

Pomt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	32,126,652 - 32,145,017 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	32,126,602 - 32,145,017 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	32,236,590 - 32,255,005 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	32,236,590 - 32,255,005 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	32,092,203 - 32,110,525 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	32,058,692 - 32,077,014 (+)	NCBI		MGSCv36	mm8
Celera	2	31,941,009 - 31,959,335 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI

Pomt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	1,189,169 - 1,203,933 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	1,189,169 - 1,203,933 (+)	NCBI	ChiLan1.0	ChiLan1.0

POMT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	7,833,278 - 7,857,624 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	102,625,290 - 102,646,066 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	131,265,750 - 131,285,881 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	131,265,750 - 131,285,881 (+)	Ensembl	panpan1.1		panPan2

POMT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	52,615,349 - 52,631,538 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	52,615,655 - 52,630,836 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	51,882,359 - 51,899,815 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	53,517,596 - 53,535,056 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	53,519,165 - 53,535,048 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	52,297,027 - 52,312,897 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	52,614,407 - 52,631,871 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	52,708,808 - 52,726,275 (-)	NCBI		UU_Cfam_GSD_1.0

Pomt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	198,481,216 - 198,499,348 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	18,249,472 - 18,267,256 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936487	18,249,472 - 18,267,875 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POMT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	271,432,210 - 271,452,461 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	271,432,196 - 271,448,584 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	305,440,591 - 305,456,740 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POMT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	6,620,179 - 6,639,051 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	6,618,312 - 6,639,024 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	8,918,116 - 8,938,223 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pomt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	4,495,254 - 4,508,616 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	4,494,701 - 4,508,735 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pomt1
69 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	91
Count of miRNA genes:	67
Interacting mature miRNAs:	83
Transcripts:	ENSRNOT00000015214
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	10778704	50302886	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	0.0000000293	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat

Markers in Region

RH130122

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,538,647 - 15,538,834 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,271,942 - 11,272,128	NCBI	Rnor6.0
Rnor_5.0	3	16,620,812 - 16,620,998	UniSTS	Rnor5.0
RGSC_v3.4	3	11,366,702 - 11,366,888	UniSTS	RGSC3.4
Celera	3	10,283,514 - 10,283,700	UniSTS
RH 3.4 Map	3	65.7	UniSTS
Cytogenetic Map	3	p11	UniSTS

RH131674

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,538,229 - 15,538,438 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,271,524 - 11,271,732	NCBI	Rnor6.0
Rnor_5.0	3	16,620,394 - 16,620,602	UniSTS	Rnor5.0
RGSC_v3.4	3	11,366,284 - 11,366,492	UniSTS	RGSC3.4
Celera	3	10,283,096 - 10,283,304	UniSTS
RH 3.4 Map	3	65.8	UniSTS
Cytogenetic Map	3	p11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	28	19	6	19		1	66	23	40	10
Low		17	29	22	13	22	8	10	8	12	1	1	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_352227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF192388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY309994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000015214 ⟹ ENSRNOP00000015214

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	15,520,481 - 15,538,581 (+)	Ensembl
Rnor_6.0 Ensembl	3	11,254,026 - 11,271,872 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082794 ⟹ ENSRNOP00000073262

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	15,520,762 - 15,538,578 (+)	Ensembl
Rnor_6.0 Ensembl	3	11,254,056 - 11,271,872 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119777 ⟹ ENSRNOP00000079634

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	15,520,762 - 15,538,578 (+)	Ensembl

RefSeq Acc Id:

NM_053406 ⟹ NP_445858

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	15,520,732 - 15,538,579 (+)	NCBI
Rnor_6.0	3	11,254,026 - 11,271,873 (+)	NCBI
Rnor_5.0	3	16,602,808 - 16,620,746 (+)	NCBI
RGSC_v3.4	3	11,348,786 - 11,366,633 (+)	RGD
Celera	3	10,265,600 - 10,283,445 (+)	RGD

Sequence:

show sequence

CGAAAAATTAGTTGGGCGCTCCGGAGTAATCGAGCAGCCTCTCCCCCAACGGTCGAACCAGCTT
GGCGGGTTGCAGGCCTGGCTCCACATGGGGAACCGCTCAATGGGACGCGAAGATACGCTTGGTG
TCCTCCCGAGCTTGCTTTTCTGCAAAATGTTGAGATTTTTGAAACGGCCTCTAGTGGTGACTAT
TGACATCAATTTGAATTTGGTGGCTCTGACTGTCCTGGGACTACTTACCCGGTTATGGCAACTC
TCCTACCCTCGGGCTGTGGTTTTTGATGAAGTGTATTACGGGCAGTACATCTCCTTTTACATGA
AGCGTGTCTTCTTCCTGGATGACAGTGGACCACCGTTCGGCCATATGCTGCTAGCCTTAGGAGG
TTGGCTAGGAGGATTCGATGGGAACTTTCTGTGGAACCGAATTGGAGCAGAATACAGTAGCAAT
GTGCCTGTATGGTCCTTACGCCTGCTGCCGGCGCTTGCTGGGGCCCTGTCAGTACCCATGGCCT
ACCAGATAGTGTTGGAGCTCCACTTTTCCCACTGTACTGCCATGGGAGCCGCCCTGCTGATGCT
CATTGAGAACGCCCTAATCACTCAGTCCAGGCTCATGCTGTTGGAATCCATACTGATATTTTTT
AACCTCTTGGCCGTGTTGTCCTATCTGAAGTTCTTCAACTCCCAAACACACAGCCCTTTCTCAG
TGCACTGGTGGCTGTGGCTAATGCTGACCGGAGTCTCTTGTTCCTGTGCGGTTGGGATCAAGTA
CATGGGCATTTTCACCTACTTGCTCGTGCTCAGCATTGCAGCTGTGCATGCCTGGCACCTGATC
GGAGACCAGACCTTGTCAAATATCTGCGTGCTCAGTCACTTGCTCGCCAGAGCCGTAGCTCTGC
TGGTCGTCCCGGTCTTCCTGTACTTACTGTTCTTCTATGTCCACCTGATGTTGCTCTACCGCTC
TGGGCCCCATGACCAAATCATGTCCAGTGCCTTCCAAGCCAGCTTGGAGGGAGGGCTAGCCCGC
ATCACCCAAGGCCAGCCCCTAGAGGTGGCCTTTGGTTCGCAGGTCACTCTGAAGAGCGTCTCCG
GCAAACCCTTGCCCTGCTGGCTTCATTCGCACAAGAACACCTATCCCATGATATATGAGAATGG
CCGTGGCAGCTCCCACCAGCAACAGGTGACCTGTTATCCCTTCAAAGACATCAATAACTGGTGG
ATCGTCAAGGACCCTGGACGACACCAGCTGGTGGTAAACAACCCCCCCAGGCCTGTGAGACATG
GAGACATTGTACAGCTCGTTCACGGCATGACCACCCGCCTGCTTAACACGCATGATGTCGCTGC
CCCGCTGAGCCCCCATTCTCAAGAAGTCTCCTGCTACATTGACTATAACATCTCCATGCCTGCC
CAGAACCTCTGGAAACTGGACATTGTAAACAGAGAGTCCAACCAGGATACCTGGAAGACTATCT
TGTCAGAAGTGCGCTTTGTGCATGTGAATACATCTGCCATCTTGAAGCTGAGCGGGGCTCACCT
CCCTGACTGGGGATTTCGGCAGTTGGAGGTGGTTGGGGAGAAGTTGTCCCTCGGCCCCCACGAG
AGCATGGTATGGAATGTGGAAGAGCACCGCTATGGCAGAGGCCATGAGCAGAAGGAGAGGGAGC
TGGAGCTCCACTCACCCACGCAGCATGATATCAGCAGGAACCTCAGCTTCATGGCCAGATTCTC
GGAGTTACAGTGGAAGATGCTGACGCTGAAGAATGAGGACTTAGAACACCAGTACAGCTCCACC
CCGCTGGAGTGGCTCACGCTGGACACCAACATTGCCTATTGGCTGCACCCCAGGACCAGTGCCC
AGATCCACTTGCTTGGAAACATCGTGATCTGGACTTCAGCCAGCCTCGCCACAGTGGCATACAC
CCTACTCTTCTTCTGGTACCTGCTCCGCCGTCGAAGGAACATCTGTGACCTCCCTGAGGATGCC
TGGTCCCACTGGGTGCTGGCTGGAGCCCTGTGTATTGGCGGTTGGGCACTCAACTATCTGCCCT
TCTTCCTGATGGAAAGGATGCTCTTCCTCTACCACTACTTGCCGGCCCTCACCTTCCAGATCCT
GCTGCTCCCAATCGTCATGCAGCACGCCAGCGACCATCTGTGCAGGTCCCAGCTGCAGAGGAAT
GTCTTCAGTGCCCTGGTGGTAGCATGGTATTCCTCTGCGTGCCATGTGTCCAACATGTTACGCC
CACTGACCTATGGGGACACGTCACTCTCACCAGGCGAGCTCCGGGCCCTTCGCTGGAAAGACAG
CTGGGACATTCTCATCCGAAAATACTAGAGACCCAGAACACAGAAGACAAGCACGCAGAATAAA
AATCTCAAAGGTGTGTTTGTCTCCCACCAACAGAGGCCTCAGCAGGCAGGACTCCCTGGGCTCA
GGAAGAGCTCCAGGAATGAATTCCAATTTCATCTCAAGAGCCCTGTTTGAAGTGATTTCTCCTC
ACACAGTGAAGAATGTGCCCAGCCACAGCATCACCCATGAGGCCCAACTCTGACCAGTGTTTGA
GCTGCCAGTGTAGGACTCACCTACACTACACCTAAGGCAGGAGGAGCAGCCAGTGAAGGAGTGA
AGTCCAGGCCCCGCCCAGCTGTGCGCCCACCAATGGGGTCTTAGCTCTCTCCCGAGGCCCACAG
TACTGCCACTCATTGTGTGCAGGTACAGTGGCCCTCTGTAAAGCCTGCTTGAAGAGCTGCCTTC
ACTCACACTGACTCCTCACCAATGCGACTCTAGAAATCCCTGGGAGACTGCACCATGCAGTCAC
CTGACTTCAGGGACAGGACAAGGTGTCCTCCACGTGGTTCCCTTGCCTTTAATTTGCCTTTCCT
AATGTAAATAAAAAGGGACAAATTGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039105979 ⟹ XP_038961907

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	15,520,820 - 15,538,579 (+)	NCBI

RefSeq Acc Id:

XM_039105980 ⟹ XP_038961908

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	15,520,717 - 15,537,963 (+)	NCBI

RefSeq Acc Id:

XM_039105981 ⟹ XP_038961909

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	15,520,717 - 15,533,926 (+)	NCBI

RefSeq Acc Id:

XR_005501994

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	15,520,717 - 15,537,416 (+)	NCBI

RefSeq Acc Id:

XR_352227

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	15,520,717 - 15,538,139 (+)	NCBI
Rnor_6.0	3	11,253,424 - 11,271,433 (+)	NCBI
Rnor_5.0	3	16,602,808 - 16,620,746 (+)	NCBI

Sequence:

show sequence

TCGCCCCCCCCCCCCCCGCTAGTCTTAGACCGGATGTCATCCTAAGCTAACTTGTAAAAAGTGA
ATTTTGGCAAAACAACCCTGAATCGAGATCTGGAGAGAGAGTGCAGTCGGTACAGGCTGGGATT
GCCAGCTAAGCACGGAAACCCACCTAAAAAGGCATGATTGCAATACCTGCGCTGGGGAAGCAAA
GAATCATAAGTTCAAGGCCATTCTCCTCTACATAGTGAGTCTGACACCTTGGGAAGGAGGGGGA
ACAGACTACTAGTGTTGGAAGAGCTTAGGAAAAGCGATCCACCACTTCCTCTGCACACCGGAAG
CTTCAAAGCGCTTACCCCTGCCCTTCAGCCAGCGTGCTGCGTAACGAAGTCGCTGAAGTAGACG
CATGGCCTGAAACGGAGCGCTCCGAACATGTGAACAACTTGTCGAAACGCACTGTGCTTTATTT
AAAAGGGCAAAGGAAACCCTAAGGCCAGGACACTCACCAGCTGCCACATTCAAGGCGGTTGAAT
TCGCCGCCCATGCGCGCCGCTATCTTCGCGCTCCAGCTGCGCACGCGCACTGCGAGCCTGTAGG
CCGCGCAGGCAAAATTAGTTGAGCGTCGAAAAATTAGTTGGGCGCTCCGGAGTAATCGAGCAGC
CTCTCCCCCAACGGTCGAACCAGCTTGGCGGGTTGCAGGCCTGGCTCCACATGGGGAACCGCTC
AATGGGACGCGAAGATACGCTTGGTGTCCTCCCGAGCTTGCTTTTCTGCAAAATGTTGAGATTT
TTGAAACGGCCTCTAGTGGTGACTATTGACATCAATTTGAATTTGGTGGCTCTGACTGTCCTGG
GACTACTTACCCGGTTATGGCAACTCTCCTACCCTCGGGCTGTGGTTTTTGATGAAGTGTATTA
CGGGCAGTACATCTCCTTTTACATGAAGCGTGTCTTCTTCCTGGATGACAGTGGACCACCGTTC
GGCCATATGCTGCTAGCCTTAGGAGGTTGGCTAGGAGGATTCGATGGGAACTTTCTGTGGAACC
GAATTGGAGCAGAATACAGTAGCAATGTGCCTGTATGGTCCTTACGCCTGCTGCCGGCGCTTGC
TGGGGCCCTGTCAGTACCCATGGCCTACCAGATAGTGTTGGAGCTCCACTTTTCCCACTGTACT
GCCATGGGAGCCGCCCTGCTGATGCTCATTGAGAACGCCCTAATCACTCAGTCCAGGCTCATGC
TGTTGGAATCCATACTGATATTTTTTAACCTCTTGGCCGTGTTGTCCTATCTGAAGTTCTTCAA
CTCCCAAACACACAGCCCTTTCTCAGTGCACTGGTGGCTGTGGCTAATGCTGACCGGAGTCTCT
TGTTCCTGTGCGGTTGGGATCAAGTACATGGGCATTTTCACCTACTTGCTCGTGCTCAGCATTG
CAGCTGTGCATGCCTGGCACCTGATCGGAGACCAGACCTTGTCAAATATCTGCGTGCTCAGTCA
CTTGCTCGCCAGAGCCGTAGCTCTGCTGGTCGTCCCGGTCTTCCTGTACTTACTGTTCTTCTAT
GTCCACCTGATGTTGCTCTACCGCTCTGGGCCCCATGACCAAATCATGTCCAGTGCCTTCCAAG
CCAGCTTGGAGGGAGGGCTAGCCCGCATCACCCAAGGCCAGCCCCTAGAGGTGGCCTTTGGTTC
GCAGGTCACTCTGAAGAGCGTCTCCGGCAAACCCTTGCCCTGCTGGCTTCATTCGCACAAGAAC
ACCTATCCCATGATATATGAGAATGGCCGTGGCAGCTCCCACCAGCAACAGGTGACCTGTTATC
CCTTCAAAGACATCAATAACTGGTGGATCGTCAAGGACCCTGGACGACACCAGCTGGTGGTAAA
CAACCCCCCCAGGCCTGTGAGACATGGAGACATTGTACAGCTCGTTCACGGCATGACCACCCGC
CTGCTTAACACGCATGATGTCGCTGCCCCGCTGAGCCCCCATTCTCAAGAAGTCTCCTGCTACA
TTGACTATAACATCTCCATGCCTGCCCAGAACCTCTGGAAACTGGACATTGTAAACAGAGAGTC
CAACCAGGATACCTGGAAGACTATCTTGTCAGAAGTGCGCTTTGTGCATGTGAATACATCTGCC
ATCTTGAAGCTGAGCGGGGCTCACCTCCCTGACTGGGGATTTCGGCAGTTGGAGGTGGTTGGGG
AGAAGTTGTCCCTCGGCCCCCACGAGAGCATGGTATGGAATGTGGAAGAGCACCGCTATGGCAG
AGGCCATGAGCAGAAGGAGAGGGAGCTGGAGCTCCACTCACCCACGCAGCATGATATCAGCAGG
AACCTCAGCTTCATGGCCAGATTCTCGGAGTTACAGTGGAAGATGCTGACGCTGAAGAATGAGG
ACTTAGAACACCAGTACAGCTCCACCCCGCTGGAGTGGCTCACGCTGGACACCAACATTGCCTA
TTGGCTGCACCCCAGGACCAGTGTAAGCGAGCTTGTGCCCAGATCCACTTGCTTGGAAACATCG
TGATCTGGACTTCAGCCAGCCTCGCCACAGTGGCATACACCCTACTCTTCTTCTGGTACCTGCT
CCGCCGTCGAAGGAACATCTGTGACCTCCCTGAGGATGCCTGGTCCCACTGGGTGCTGGCTGGA
GCCCTGTGTATTGGCGGTTGGGCACTCAACTATCTGCCCTTCTTCCTGATGGAAAGGATGCTCT
TCCTCTACCACTACTTGCCGGCCCTCACCTTCCAGATCCTGCTGCTCCCAATCGTCATGCAGCA
CGCCAGCGACCATCTGTGCAGGTCCCAGCTGCAGAGGAATGTCTTCAGTGCCCTGGTGGTAGCA
TGGTATTCCTCTGCGTGCCATGTGTCCAACATGTTACGCCCACTGACCTATGGGGACACGTCAC
TCTCACCAGGCGAGCTCCGGGCCCTTCGCTGGAAAGACAGCTGGGACATTCTCATCCGAAAATA
CTAGAGACCCAGAACACAGAAGACAAGCACGCAGAATAAAAATCTCAAAGGTGTGTTTGTCTCC
CACCAACAGAGGCCTCAGCAGGCAGGACTCCCTGGGCTCAGGAAGAGCTCCAGGAATGAATTCC
AATTTCATCT

hide sequence

Protein Sequences


Protein RefSeqs	NP_445858	(Get FASTA)	NCBI Sequence Viewer
	XP_038961907	(Get FASTA)	NCBI Sequence Viewer
	XP_038961908	(Get FASTA)	NCBI Sequence Viewer
	XP_038961909	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG53461	(Get FASTA)	NCBI Sequence Viewer
	AAH70912	(Get FASTA)	NCBI Sequence Viewer
	EDL93252	(Get FASTA)	NCBI Sequence Viewer
	EDL93253	(Get FASTA)	NCBI Sequence Viewer
	Q99PR0	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_445858 ⟸ NM_053406

- UniProtKB:

Q6IRI2 (UniProtKB/Swiss-Prot), Q99PR0 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGNRSMGREDTLGVLPSLLFCKMLRFLKRPLVVTIDINLNLVALTVLGLLTRLWQLSYPRAVVF
DEVYYGQYISFYMKRVFFLDDSGPPFGHMLLALGGWLGGFDGNFLWNRIGAEYSSNVPVWSLRL
LPALAGALSVPMAYQIVLELHFSHCTAMGAALLMLIENALITQSRLMLLESILIFFNLLAVLSY
LKFFNSQTHSPFSVHWWLWLMLTGVSCSCAVGIKYMGIFTYLLVLSIAAVHAWHLIGDQTLSNI
CVLSHLLARAVALLVVPVFLYLLFFYVHLMLLYRSGPHDQIMSSAFQASLEGGLARITQGQPLE
VAFGSQVTLKSVSGKPLPCWLHSHKNTYPMIYENGRGSSHQQQVTCYPFKDINNWWIVKDPGRH
QLVVNNPPRPVRHGDIVQLVHGMTTRLLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWKLDI
VNRESNQDTWKTILSEVRFVHVNTSAILKLSGAHLPDWGFRQLEVVGEKLSLGPHESMVWNVEE
HRYGRGHEQKERELELHSPTQHDISRNLSFMARFSELQWKMLTLKNEDLEHQYSSTPLEWLTLD
TNIAYWLHPRTSAQIHLLGNIVIWTSASLATVAYTLLFFWYLLRRRRNICDLPEDAWSHWVLAG
ALCIGGWALNYLPFFLMERMLFLYHYLPALTFQILLLPIVMQHASDHLCRSQLQRNVFSALVVA
WYSSACHVSNMLRPLTYGDTSLSPGELRALRWKDSWDILIRKY

hide sequence

RefSeq Acc Id:

ENSRNOP00000073262 ⟸ ENSRNOT00000082794

RefSeq Acc Id:

ENSRNOP00000015214 ⟸ ENSRNOT00000015214

RefSeq Acc Id:	XP_038961908 ⟸ XM_039105980
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K523 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961909 ⟸ XM_039105981
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038961907 ⟸ XM_039105979
- Peptide Label:	isoform X1
- UniProtKB:	Q6IRI2 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:

ENSRNOP00000079634 ⟸ ENSRNOT00000119777

Protein Domains

MIR

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q99PR0-F1-model_v2	AlphaFold	Q99PR0	1-747	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691988

Promoter ID:

EPDNEW_R2503

Type:

initiation region

Name:

Pomt1_1

Description:

protein-O-mannosyltransferase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	11,254,061 - 11,254,121	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620078	AgrOrtholog
BioCyc Gene	G2FUF-50151	BioCyc
BioCyc Pathway	PWY-7922 [protein O-mannosylation II (mammals, core M1 and core M2)]	BioCyc
	PWY-7979 [protein O-mannosylation III (mammals, core M3)]	BioCyc
Ensembl Genes	ENSRNOG00000010477	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000015214	ENTREZGENE
	ENSRNOP00000015214.3	UniProtKB/Swiss-Prot
	ENSRNOP00000073262	ENTREZGENE
	ENSRNOP00000073262.1	UniProtKB/TrEMBL
	ENSRNOP00000079634.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015214	ENTREZGENE
	ENSRNOT00000015214.5	UniProtKB/Swiss-Prot
	ENSRNOT00000082794	ENTREZGENE
	ENSRNOT00000082794.2	UniProtKB/TrEMBL
	ENSRNOT00000119777.1	UniProtKB/TrEMBL
Gene3D-CATH	2.80.10.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7104668	IMAGE-MGC_LOAD
InterPro	GlyclTrfase_39-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glyco_trans_39/83	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MIR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MIR_motif	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PMT_4TMC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:84430	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91582	IMAGE-MGC_LOAD
NCBI Gene	84430	ENTREZGENE
PANTHER	PROTEIN O-MANNOSYL-TRANSFERASE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10050	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	MIR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PMT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PMT_4TMC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Pomt1	PhenoGen
PROSITE	MIR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	MIR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF82109	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K523	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZN20_RAT	UniProtKB/TrEMBL
	POMT1_RAT	UniProtKB/Swiss-Prot
	Q6IRI2	ENTREZGENE
	Q99PR0	ENTREZGENE
UniProt Secondary	Q6IRI2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Pomt1	protein-O-mannosyltransferase 1		protein O-mannosyltransferase 1	Name updated	1299863	APPROVED
2002-08-07	Pomt1	protein O-mannosyltransferase 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)