Golga2l1 (golgin A2 like 1) - Rat Genome Database

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Gene: Golga2l1 (golgin A2 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Golga2l1
Name: golgin A2 like 1
RGD ID: 7579002
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102547011; uncharacterized LOC102547011; uncharacterized protein Golga2l1; uncharacterized protein LOC102547011
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,430,294 - 33,434,620 (+)NCBIGRCr8
mRatBN7.2313,033,431 - 13,040,798 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,033,687 - 13,037,380 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.038,322,517 - 8,326,640 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,322,701 - 8,325,080 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0313,665,847 - 13,669,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera37,811,444 - 7,815,567 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Golga2l1
34 total Variants

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:35
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000070863
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)31043430624512004Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat

1 to 10 of 22 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 5 22 69 56 58 31 20 31 6 124 53 53 27 50 27



Ensembl Acc Id: ENSRNOT00000070863   ⟹   ENSRNOP00000064702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl313,033,687 - 13,037,380 (+)Ensembl
Rnor_6.0 Ensembl38,322,701 - 8,325,080 (+)Ensembl
RefSeq Acc Id: XM_006233904   ⟹   XP_006233966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8333,430,294 - 33,434,620 (+)NCBI
mRatBN7.2313,033,431 - 13,040,798 (+)NCBI
Rnor_6.038,322,593 - 8,326,640 (+)NCBI
Rnor_5.0313,665,847 - 13,669,060 (+)NCBI
Sequence:
Protein RefSeqs XP_006233966 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064702.2
RefSeq Acc Id: XP_006233966   ⟸   XM_006233904
- Sequence:
Ensembl Acc Id: ENSRNOP00000064702   ⟸   ENSRNOT00000070863

Name Modeler Protein Id AA Range Protein Structure
AF-M0R5N1-F1-model_v2 AlphaFold M0R5N1 1-163 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-50256 BioCyc
Ensembl Genes ENSRNOG00000050262 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000070863.3 UniProtKB/TrEMBL
NCBI Gene LOC102547011 ENTREZGENE
PhenoGen Golga2l1 PhenoGen
RatGTEx ENSRNOG00000050262 RatGTEx
UniProt M0R5N1_RAT UniProtKB/TrEMBL


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Golga2l1  golgin A2 like 1  LOC102547011  uncharacterized LOC102547011  Symbol and Name Changed 1299863 APPROVED
2013-12-18 LOC102547011  uncharacterized LOC102547011      Symbol and Name status set to provisional 70820 PROVISIONAL