Zbtb26 (zinc finger and BTB domain containing 26)

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Gene: Zbtb26 (zinc finger and BTB domain containing 26) Rattus norvegicus

Analyze

Symbol:

Zbtb26

Name:

zinc finger and BTB domain containing 26

RGD ID:

1308561

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human ZBTB26 (zinc finger and BTB domain containing 26); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC311910; zinc finger and BTB domain-containing protein 26

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	21,195,319 - 21,207,925 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	21,195,319 - 21,207,942 (-)	Ensembl
Rnor_6.0	3	21,685,339 - 21,697,945 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,687,933 - 21,697,945 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	26,924,514 - 26,937,120 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,194,711 - 17,204,723 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	17,091,189 - 17,110,137 (-)	NCBI
Celera	3	19,633,479 - 19,643,491 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (EXP)

antirheumatic drug (ISO)

aristolochic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium dichloride (ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

entinostat (ISO)

folic acid (ISO)

formaldehyde (ISO)

L-methionine (ISO)

manganese(II) chloride (EXP)

methylmercury chloride (ISO)

pentanal (ISO)

phenobarbital (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

tetrachloromethane (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (IBA)

Molecular Function

DNA-binding transcription repressor activity, RNA polymerase II-specific (IBA)

identical protein binding (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:25416956

Genomics

Comparative Map Data

Zbtb26
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	21,195,319 - 21,207,925 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	21,195,319 - 21,207,942 (-)	Ensembl
Rnor_6.0	3	21,685,339 - 21,697,945 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,687,933 - 21,697,945 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	26,924,514 - 26,937,120 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,194,711 - 17,204,723 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	17,091,189 - 17,110,137 (-)	NCBI
Celera	3	19,633,479 - 19,643,491 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

ZBTB26
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	122,915,566 - 122,931,512 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	122,915,566 - 122,931,512 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	125,677,845 - 125,693,791 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,720,199 - 124,733,600 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	9	122,759,932 - 122,773,333	NCBI
Celera	9	96,328,698 - 96,342,098 (-)	NCBI
Cytogenetic Map	9	q33.2	NCBI
HuRef	9	95,295,217 - 95,308,624 (-)	NCBI		HuRef
CHM1_1	9	125,828,897 - 125,842,302 (-)	NCBI		CHM1_1

Zbtb26
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	37,322,180 - 37,333,184 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	37,322,180 - 37,333,147 (-)	Ensembl
GRCm38	2	37,432,168 - 37,443,172 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	37,432,168 - 37,443,135 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	37,287,688 - 37,298,641 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	37,254,177 - 37,265,130 (-)	NCBI			mm8
Celera	2	37,116,176 - 37,127,129 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI

Zbtb26
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	5,031,534 - 5,044,983 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	5,031,500 - 5,044,983 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB26
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	122,374,407 - 122,390,385 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	122,377,452 - 122,378,777 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	94,040,784 - 94,056,791 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ZBTB26
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	59,860,499 - 59,874,096 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	59,055,608 - 59,069,232 (+)	NCBI
ROS_Cfam_1.0	9	60,779,792 - 60,793,395 (+)	NCBI
UMICH_Zoey_3.1	9	59,538,565 - 59,552,181 (+)	NCBI
UNSW_CanFamBas_1.0	9	59,853,571 - 59,867,181 (+)	NCBI
UU_Cfam_GSD_1.0	9	59,946,319 - 59,959,937 (+)	NCBI

Zbtb26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	191,632,030 - 191,645,812 (-)	NCBI
SpeTri2.0	NW_004936487	11,403,129 - 11,414,331 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB26
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	263,831,224 - 263,846,907 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	263,831,224 - 263,847,206 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	297,296,091 - 297,311,718 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB26
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	15,203,525 - 15,216,682 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	12	15,214,777 - 15,216,102 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666079	852,058 - 865,306 (-)	NCBI	Vero_WHO_p1.0

Zbtb26
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	12,004,242 - 12,018,361 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH142968

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,206,837 - 21,206,950 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,696,858 - 21,696,970	NCBI	Rnor6.0
Rnor_5.0	3	26,936,033 - 26,936,145	UniSTS	Rnor5.0
RGSC_v3.4	3	17,203,636 - 17,203,748	UniSTS	RGSC3.4
Celera	3	19,642,404 - 19,642,516	UniSTS
RH 3.4 Map	3	208.8	UniSTS
Cytogenetic Map	3	q11	UniSTS

RH139023

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,206,838 - 21,207,002 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,696,859 - 21,697,022	NCBI	Rnor6.0
Rnor_5.0	3	26,936,034 - 26,936,197	UniSTS	Rnor5.0
RGSC_v3.4	3	17,203,637 - 17,203,800	UniSTS	RGSC3.4
Celera	3	19,642,405 - 19,642,568	UniSTS
Cytogenetic Map	3	q11	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	33278763	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	10778704	50302886	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	0.0000000293	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	17374703	35528639	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	28441896	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	47233430	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	18311454	47233430	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	18311454	47233430	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	18311454	47233430	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	18311454	47233430	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	18311454	47233430	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	18311454	47233430	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	133
Count of miRNA genes:	92
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000012433
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		4	5	4	2	4			53	14	31	4
Low	3	38	52	37	17	37	8	10	21	21	10	7	8
Below cutoff		1						1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000012433 ⟹ ENSRNOP00000012433

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,197,920 - 21,207,883 (-)	Ensembl
Rnor_6.0 Ensembl	3	21,687,933 - 21,697,945 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098247 ⟹ ENSRNOP00000078417

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,195,686 - 21,201,632 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110572 ⟹ ENSRNOP00000096920

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,195,319 - 21,207,942 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119202 ⟹ ENSRNOP00000076901

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,195,319 - 21,207,942 (-)	Ensembl

RefSeq Acc Id:

NM_001107840 ⟹ NP_001101310

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	21,197,913 - 21,207,925 (-)	NCBI
Rnor_6.0	3	21,687,933 - 21,697,945 (-)	NCBI
Rnor_5.0	3	26,924,514 - 26,937,120 (-)	NCBI
RGSC_v3.4	3	17,194,711 - 17,204,723 (-)	RGD
Celera	3	19,633,479 - 19,643,491 (-)	RGD

Sequence:

show sequence

GCCAGGGCTGCCCTTCCGGTTCCGTTGGGTCCCCCTTTGGCTCAGGTTGTCTGCCCCTCCCCCT
TCGCGGAGCCCCGAGGGGCCGGAGCTCCTGGCTTTGCCAGATCCGGATGGCGGCCTTTCCCCCG
GGTTTGTCTGCCAAAATGTCTGAAAGATCAGATCTCCTTCACTTCAAGTTTGAAAATTATGGAG
ATTCAATGTTACAAAAAATGAACAAATTAAGAGAAGAGAATAAATTTTGTGATGTTACAGTTCT
CATAGATGATGTTGAGGTGCAGGGGCATAAAATTGTTTTTGCTGCAGGTTCCCCCTTCTTAAGA
GACCAATTTTTACTGAATGATTCCCGAGAGGTGAAAATCTCCATATTACAGAGTTCTGAAGTGG
GGAGACAATTACTCTTATCCTGTTATAGTGGTGTGCTGGAATTCCCTGAGATGGAACTGGTAAA
TTACTTGACTGCTGCAAGTTTTCTTCAGATGAGCCACATTGTAGAACGGTGCACACAGGCGCTG
TGGAAGTTTATAAAGCCAAAACAACCAATGGATAGTAAAGAGGGATCTGAACCACAGAGTGCTT
CTCCCCAGTCGAAAGAACAGCAGGGAGATGCCAGAGGCTCTCCCAAACAGGACTTACCTTGTAT
TCATCCATCTGAAGACAGTATGGATATGGAGGACAGTGATATTCAGATTGTTAAGGTAGAATCT
ATTGGGGATGTATCAGAGGATAGAAGTAAAAAAGATCAGAACCAGTACATTTCTTCTGAACCCA
CTGCTTTACATTCATCAGAGCCCCAGCACTCCCTGATAAACTCAACTGTGGAAAACAGAGTTAA
TGAACTAGACCAGAGCCATCTCCACAATTACGCCCTCTCTTACACAGGCAATGATGACATCATC
ATGACCTCAAAAGATGTCTTTGGGCCTAATATTCGAGGTGTAGACAAAGGCTTACAGTGGCATC
ACCAATGCCCAAAGTGTACCAGGGTATTCCGTCACCTGGAGAACTACGCCAACCATTTAAAAAT
GCACAAACTCTTTATGTGTCTACTCTGCGGCAAGACTTTCACTCAGAAAGGCAATCTTCATCGA
CACATGCGTGTACATGCCGGAATTAAACCTTTCCAGTGTAAAATCTGTGGGAAAACCTTTTCTC
AGAAGTGTTCCTTACAGGACCATCTTAACCTTCACAGTGGAGATAAGCCCCATAAATGTAACTA
TTGTGACATGGTTTTTGCACATAAGCCAGTGTTGAGGAAACACCTTAAACAGTTGCATGGCAAA
AACAGCTTTGATAATGCCAATGAGAGGAGTGTGCAAGACCTCACAGTGGATTTTGACTCTTTTG
CATGTACAACAGTCACAGACTCTAATTGTCAGCCACAACCTGATGCAACACAGGTCCTGGATGC
AGGTAAACTGACCCAAGCTGTCCTCAGCTTAAGGAGTGACAGTACATGTGTAAATTGAACAGGG
CTCAGTGCTGACAGCCAGAGCTGACAGAGTATGGCAGTAATCTCTGAGCCTTTTTAGAAGTCAC
TTGGTAGTTTCTTCTACAAAGCCTCCAAGCAGGTGGTAGTGAGTGAGTTGAAGCACTAGCAGAC
CAGGTGCTGTGGCTTTGCTTTCCCTTGGCCCTCTCCTGGTTCTCTTTTGAGTTATTTAACCTGT
GATGTTTGTTTTCCTTTTCGAAGGAATAATTCCATTTGTCTACCTAGTGTTGATATATGTCTTA
GACTGACACTATTTTACATTTTTACCAAGCACATTCTGAAGGTACCAACAAATAACATTATCTA
CTTCCTACTAATAAATGCTGTGTTTAGGAAAGTTAATATTTTTCCTTGGGGGCGGGGGGAATGA
GGCTGGGATAGGAGGTGATAACTGCTGTTGACCTAAATATGTGATGGGGTTTCTGTTTGTCTGC
TGTGATTCAGCTAAGGCTGACGAGTGAATCTTCTCCCTGGCATTTGTACTTTTTTGGAGCTGCT
GTGGAAAAGTGTGTAGGTTTGTACTTTAAACACTAACTGCCCACTGAAATTTCCTTATAACCCA
GAATACAATATTTTCAGCAACTTCTGCAAATAAAGTAGGAACTGCCATGGGGAGGATAATCAGT
AAATGAGAGAAATGTAATAAAACACAGTGGGTAAATGGAAGGCTTCCTAAGTATTAGGACCTAA
CAAGAGGCCAGCTGCTTGCATATGTGTCCTGTTGATGCTTTTG

hide sequence

RefSeq Acc Id:

XM_006234082 ⟹ XP_006234144

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	21,195,319 - 21,207,560 (-)	NCBI
Rnor_6.0	3	21,685,339 - 21,697,528 (-)	NCBI
Rnor_5.0	3	26,924,514 - 26,937,120 (-)	NCBI

Sequence:

show sequence

AAAAAGTGCAGCAGTTAAGGCCGGCAGAAAACTGAACGGCGGGAGCTAGCCAAGGCAAGGCCTT
CAGTGCCAACCGCGAGACTACTGTCTGCCAAAATGTCTGAAAGATCAGATCTCCTTCACTTCAA
GTTTGAAAATTATGGAGATTCAATGTTACAAAAAATGAACAAATTAAGAGAAGAGAATAAATTT
TGTGATGTTACAGTTCTCATAGATGATGTTGAGGTGCAGGGGCATAAAATTGTTTTTGCTGCAG
GTTCCCCCTTCTTAAGAGACCAATTTTTACTGAATGATTCCCGAGAGGTGAAAATCTCCATATT
ACAGAGTTCTGAAGTGGGGAGACAATTACTCTTATCCTGTTATAGTGGTGTGCTGGAATTCCCT
GAGATGGAACTGGTAAATTACTTGACTGCTGCAAGTTTTCTTCAGATGAGCCACATTGTAGAAC
GGTGCACACAGGCGCTGTGGAAGTTTATAAAGCCAAAACAACCAATGGATAGTAAAGAGGGATC
TGAACCACAGAGTGCTTCTCCCCAGTCGAAAGAACAGCAGGGAGATGCCAGAGGCTCTCCCAAA
CAGGACTTACCTTGTATTCATCCATCTGAAGACAGTATGGATATGGAGGACAGTGATATTCAGA
TTGTTAAGGTAGAATCTATTGGGGATGTATCAGAGGATAGAAGTAAAAAAGATCAGAACCAGTA
CATTTCTTCTGAACCCACTGCTTTACATTCATCAGAGCCCCAGCACTCCCTGATAAACTCAACT
GTGGAAAACAGAGTTAATGAACTAGACCAGAGCCATCTCCACAATTACGCCCTCTCTTACACAG
GCAATGATGACATCATCATGACCTCAAAAGATGTCTTTGGGCCTAATATTCGAGGTGTAGACAA
AGGCTTACAGTGGCATCACCAATGCCCAAAGTGTACCAGGGTATTCCGTCACCTGGAGAACTAC
GCCAACCATTTAAAAATGCACAAACTCTTTATGTGTCTACTCTGCGGCAAGACTTTCACTCAGA
AAGGCAATCTTCATCGACACATGCGTGTACATGCCGGAATTAAACCTTTCCAGTGTAAAATCTG
TGGGAAAACCTTTTCTCAGAAGTGTTCCTTACAGGACCATCTTAACCTTCACAGTGGAGATAAG
CCCCATAAATGTAACTATTGTGACATGGTTTTTGCACATAAGCCAGTGTTGAGGAAACACCTTA
AACAGTTGCATGGCAAAAACAGCTTTGATAATGCCAATGAGAGGAGTGTGCAAGACCTCACAGT
GGATTTTGACTCTTTTGCATGTACAACAGTCACAGACTCTAATTGTCAGCCACAACCTGATGCA
ACACAGGTCCTGGATGCAGGTAAACTGACCCAAGCTGTCCTCAGCTTAAGGAGTGACAGTACAT
GTGTAAATTGAACAGGGCTCAGTGCTGACAGCCAGAGCTGACAGAGTATGGCAGTAATCTCTGA
GCCTTTTTAGAAGTCACTTGGTAGTTTCTTCTACAAAGCCTCCAAGCAGGTGGTAGTGAGTGAG
TTGAAGCACTAGCAGACCAGGTGCTGTGGCTTTGCTTTCCCTTGGCCCTCTCCTGGTTCTCTTT
TGAGTTATTTAACCTGTGATGTTTGTTTTCCTTTTCGAAGGAATAATTCCATTTGTCTACCTAG
TGTTGATATATGTCTTAGACTGACACTATTTTACATTTTTACCAAGCACATTCTGAAGGTACCA
ACAAATAACATTATCTACTTCCTACTAATAAATGCTGTGTTTAGGAAAGTTAATATTTTTCCTT
GGGGGCGGGGGGAATGAGGCTGGGATAGGAGGTGATAACTGCTGTTGACCTAAATATGTGATGG
GGTTTCTGTTTGTCTGCTGTGATTCAGCTAAGGCTGACGAGTGAATCTTCTCCCTGGCATTTGT
ACTTTTTTGGAGCTGCTGTGGAAAAGTGTGTAGGTTTGTACTTTAAACACTAACTGCCCACTGA
AATTTCCTTATAACCCAGAATACAATATTTTCAGCAACTTCTGCAAATAAAGTAGGAACTGCCA
TGGGGAGGATAATCAGTAAATGAGAGAAATGTAATAAAACACAGTGGGTAAATGGAAGGCTTCC
TAAGTATTAGGACCTAACAAGAGGCCAGCTGCTTGCATATGTGTCCTGTTGATGCTTTTGTAAT
TGGAAGTGCTTTAGGCATACTTATGTGCGCTAAAGAATAATGGACTATGTTGGAGTCTAAACTA
TGACTATACATAAGAAAGGTACGTTCGGCCATTACTTGTCCAGTATAGAGTTAATGTCTCTGGT
CTTTTCACGTGTACCTTCATCTTGGAATTGATGAAAAAAATTAAATGTGATACAGAGGAACTAC
CAGAAATTTTGCATTTAGAGGTACACAGTACACTGTCCACTTTTGCTACCTGTGATAGTTTATC
TTGAAGTAAATTTTAGACATTAGTTTGAGCCTGCTTCTTACCCAAGGGTTACAGTGAGGTGATA
TGATTGCTGGAGAACTTAGAAACTCTCAGAAGATGGCTTATACTATCTCTATTTTTTAAAATAG
GGGCATTTAGAGTCAAACAGGTAGGCTGGCCACCACTGACCCAAATATACCTGACTAAATAGGA
ATCATTATCCCCAGTACATCTCTTCCACTATACCTTGGCTTTAACAGATGGGAACAGTAACACA
TTAACAGAAACTTTCCCGTTTTGTTCCACTATTGTATATTCATCCCTTTGACTTAGAGACAGAC
AAGACTTCACCAACATGATGTCACAGAAGGACTTGTGAGAATCACTTTTTAAACTTTATTTTAT
TTTGGTGGCTTGTACCTGTAATCTCAGAATTTACAAAGTTAGAGGAGAGTTGCCTGGGCTATAG
AGTGAGGCTGAGGCCCTCCTTCAAAAGACCTAAATAAATACAGTTATTTTATGGTAGTGGTGCT
GGAAGTTGAACCCAGTGACTATACTATTTCTAAATGACTGACTGTTTTGGCTATTAAAGGAAGG
GTAAGTTTGAATAATGTAAAAATGGTCCAAATATGAAACTGATTTTGTCTAAGAAATGTTATTT
CCACTGGCCTTCTGTTTTTATTTCTAAGCTATGAGAGTACATGGACAGATAATCCAAAAATTAA
AATTAACATAATTGATATATTTACATATGGCTCAGATTTGAGGTATAATTTCCACTAAATAGTT
AAATATGAGTACAGTCAGCTAATATGACTGCTGGGTGCTTTATGCCCAAAATTAGTCAATGAAT
GGCCTAATAATGCTTCCTAGCATTCTGATTTTTTTCATGATTCATTCAAAGAGCACCAATTCTA
TGCAACAATGAGACTCTACTCATTCAATGGTTAAAATATTTTCTCTGAACATCATTTTAAGATG
GTGGGGTTCCATATGCTTTTTCTTGTCCAGTTACTGTTCATAGTTTGAAGACTTAAAAACAGCA
TGGATTCAAATAATACTTGTCTCTCTGCTTGGTTGGAGGCTATTTCTTGACTTATTTCAGTCAC
TCAGAGGCGCTTTTTTTGCCCCTTTTTTAATGCTGGAGAGTTTGAAACCAAGTCCTCATATATG
TTAAGCATGCACTCTAGTACCAAGCTACTCCCACAGCCTTAAGAAATATTGGTAACCAACTGGA
ATTTCCAGGTACTATGTTATATTCTGAAAATGGGAGGTAATATTGCTATAGTCCCTGTTCTTAT
AGGGCTCACAGTGTCAAGTGATTTTAGTGAGATGAGGTCTCGAGTTTATGTCCTAACTAGAATA
AATTTGCCTTTTTTTTTTCATCATTTAAAACAGTGTTTCTCAACCTGTAGATCGTGACCCCTTT
GGGGAGGGGTTGCCTAAACTAAGACCATAGGAATTTTTTGTTTACATTATGATTTATTTACATT
ATAATTCATAATAGTAGCAAAAATGATGAAATGATGAAAATAATTTTGTTGTTGGGGTCAGTAC
AGCATAAGGAACTGTATTAAACGATCACAGTATTAGGAAGGTTGAGAACCACTGACTTAAAGTC
GGCTTTCTTAGGGTTTTTTGTTAGTAAAATTTTTGGTTCTATTTGCAAGTGCAAACCACTTAAC
TAATTTGTGATCTCCAGTTCTTGGCTGGAGAGGCCTTATTTTTGGTGATATATTTAATTTTGGT
GGACTTGGGTTCTTTGCTTACATGTTTCCCAGATTTTAAAGCAAAGAGAAAGCACAAATGTTTT
ATTGTGGAAGAAGAAGGCTTTCTAACACTAGTGATTATATGGAGCAGGGGTGAACCTTAGCTAC
TCGGCATTTGGTTTGGTTTGGTTCTTTTCCTTTTCCTTTTCCTTTTCCCTTTTTTTTGAGGCAG
GATCTTACTATGTAGCCTTTGCTGCCTCTGCTCCCCGGGCCTGGGATCAAAGGTATGTGCCACC
ATACCAGTGTGTTATAAGGATTCCTAGGAAAACTTCAAAAGGAAGCTATTGTAGCTTGTTTTTT
TTTTTAATTACTGTTATTTATTTATTATGTTATTTAATTATGAAAACAAGCTCCAAACTGAAGT
GGCTCTGAGGTAAATCAGGTGTGATTTTTGCATTAGTTTAGAAAATATGTAAGTGAAAGGTGAC
TAATGTTACCATTTCTAAAATATTGTCCTAAACAAACAACTTAGAACATTTTATTTCAGCTCAT
GAATGGCTGTTCTAAATCTGTTGTATGTTAGACATACTCTGAACTACCTCTTTACTTAATGGGG
AAGTTTCCTTAATAAAAGTTTGACAATTAA

hide sequence

RefSeq Acc Id:

XM_017591851 ⟹ XP_017447340

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	21,195,319 - 21,207,560 (-)	NCBI
Rnor_6.0	3	21,685,339 - 21,697,509 (-)	NCBI

Sequence:

show sequence

GCCGGCAGAAAACTGAACGGCGGGAGCTAGCCAAGGCAAGGCCTTCAGTGCCAACCGCGAGACT
ACTGGATAGCCACAGGCAGCTGTCCAGCGTAAGAGTTGGAAACTCAAATGTGGAGATCAGCCTA
AGCTTCGTGGCATGTGGGCCATGAGAAGAGTTGGCATCATAGAGGGAGCACTGAAAAAGAAGGT
CTGCCAAAATGTCTGAAAGATCAGATCTCCTTCACTTCAAGTTTGAAAATTATGGAGATTCAAT
GTTACAAAAAATGAACAAATTAAGAGAAGAGAATAAATTTTGTGATGTTACAGTTCTCATAGAT
GATGTTGAGGTGCAGGGGCATAAAATTGTTTTTGCTGCAGGTTCCCCCTTCTTAAGAGACCAAT
TTTTACTGAATGATTCCCGAGAGGTGAAAATCTCCATATTACAGAGTTCTGAAGTGGGGAGACA
ATTACTCTTATCCTGTTATAGTGGTGTGCTGGAATTCCCTGAGATGGAACTGGTAAATTACTTG
ACTGCTGCAAGTTTTCTTCAGATGAGCCACATTGTAGAACGGTGCACACAGGCGCTGTGGAAGT
TTATAAAGCCAAAACAACCAATGGATAGTAAAGAGGGATCTGAACCACAGAGTGCTTCTCCCCA
GTCGAAAGAACAGCAGGGAGATGCCAGAGGCTCTCCCAAACAGGACTTACCTTGTATTCATCCA
TCTGAAGACAGTATGGATATGGAGGACAGTGATATTCAGATTGTTAAGGTAGAATCTATTGGGG
ATGTATCAGAGGATAGAAGTAAAAAAGATCAGAACCAGTACATTTCTTCTGAACCCACTGCTTT
ACATTCATCAGAGCCCCAGCACTCCCTGATAAACTCAACTGTGGAAAACAGAGTTAATGAACTA
GACCAGAGCCATCTCCACAATTACGCCCTCTCTTACACAGGCAATGATGACATCATCATGACCT
CAAAAGATGTCTTTGGGCCTAATATTCGAGGTGTAGACAAAGGCTTACAGTGGCATCACCAATG
CCCAAAGTGTACCAGGGTATTCCGTCACCTGGAGAACTACGCCAACCATTTAAAAATGCACAAA
CTCTTTATGTGTCTACTCTGCGGCAAGACTTTCACTCAGAAAGGCAATCTTCATCGACACATGC
GTGTACATGCCGGAATTAAACCTTTCCAGTGTAAAATCTGTGGGAAAACCTTTTCTCAGAAGTG
TTCCTTACAGGACCATCTTAACCTTCACAGTGGAGATAAGCCCCATAAATGTAACTATTGTGAC
ATGGTTTTTGCACATAAGCCAGTGTTGAGGAAACACCTTAAACAGTTGCATGGCAAAAACAGCT
TTGATAATGCCAATGAGAGGAGTGTGCAAGACCTCACAGTGGATTTTGACTCTTTTGCATGTAC
AACAGTCACAGACTCTAATTGTCAGCCACAACCTGATGCAACACAGGTCCTGGATGCAGGTAAA
CTGACCCAAGCTGTCCTCAGCTTAAGGAGTGACAGTACATGTGTAAATTGAACAGGGCTCAGTG
CTGACAGCCAGAGCTGACAGAGTATGGCAGTAATCTCTGAGCCTTTTTAGAAGTCACTTGGTAG
TTTCTTCTACAAAGCCTCCAAGCAGGTGGTAGTGAGTGAGTTGAAGCACTAGCAGACCAGGTGC
TGTGGCTTTGCTTTCCCTTGGCCCTCTCCTGGTTCTCTTTTGAGTTATTTAACCTGTGATGTTT
GTTTTCCTTTTCGAAGGAATAATTCCATTTGTCTACCTAGTGTTGATATATGTCTTAGACTGAC
ACTATTTTACATTTTTACCAAGCACATTCTGAAGGTACCAACAAATAACATTATCTACTTCCTA
CTAATAAATGCTGTGTTTAGGAAAGTTAATATTTTTCCTTGGGGGCGGGGGGAATGAGGCTGGG
ATAGGAGGTGATAACTGCTGTTGACCTAAATATGTGATGGGGTTTCTGTTTGTCTGCTGTGATT
CAGCTAAGGCTGACGAGTGAATCTTCTCCCTGGCATTTGTACTTTTTTGGAGCTGCTGTGGAAA
AGTGTGTAGGTTTGTACTTTAAACACTAACTGCCCACTGAAATTTCCTTATAACCCAGAATACA
ATATTTTCAGCAACTTCTGCAAATAAAGTAGGAACTGCCATGGGGAGGATAATCAGTAAATGAG
AGAAATGTAATAAAACACAGTGGGTAAATGGAAGGCTTCCTAAGTATTAGGACCTAACAAGAGG
CCAGCTGCTTGCATATGTGTCCTGTTGATGCTTTTGTAATTGGAAGTGCTTTAGGCATACTTAT
GTGCGCTAAAGAATAATGGACTATGTTGGAGTCTAAACTATGACTATACATAAGAAAGGTACGT
TCGGCCATTACTTGTCCAGTATAGAGTTAATGTCTCTGGTCTTTTCACGTGTACCTTCATCTTG
GAATTGATGAAAAAAATTAAATGTGATACAGAGGAACTACCAGAAATTTTGCATTTAGAGGTAC
ACAGTACACTGTCCACTTTTGCTACCTGTGATAGTTTATCTTGAAGTAAATTTTAGACATTAGT
TTGAGCCTGCTTCTTACCCAAGGGTTACAGTGAGGTGATATGATTGCTGGAGAACTTAGAAACT
CTCAGAAGATGGCTTATACTATCTCTATTTTTTAAAATAGGGGCATTTAGAGTCAAACAGGTAG
GCTGGCCACCACTGACCCAAATATACCTGACTAAATAGGAATCATTATCCCCAGTACATCTCTT
CCACTATACCTTGGCTTTAACAGATGGGAACAGTAACACATTAACAGAAACTTTCCCGTTTTGT
TCCACTATTGTATATTCATCCCTTTGACTTAGAGACAGACAAGACTTCACCAACATGATGTCAC
AGAAGGACTTGTGAGAATCACTTTTTAAACTTTATTTTATTTTGGTGGCTTGTACCTGTAATCT
CAGAATTTACAAAGTTAGAGGAGAGTTGCCTGGGCTATAGAGTGAGGCTGAGGCCCTCCTTCAA
AAGACCTAAATAAATACAGTTATTTTATGGTAGTGGTGCTGGAAGTTGAACCCAGTGACTATAC
TATTTCTAAATGACTGACTGTTTTGGCTATTAAAGGAAGGGTAAGTTTGAATAATGTAAAAATG
GTCCAAATATGAAACTGATTTTGTCTAAGAAATGTTATTTCCACTGGCCTTCTGTTTTTATTTC
TAAGCTATGAGAGTACATGGACAGATAATCCAAAAATTAAAATTAACATAATTGATATATTTAC
ATATGGCTCAGATTTGAGGTATAATTTCCACTAAATAGTTAAATATGAGTACAGTCAGCTAATA
TGACTGCTGGGTGCTTTATGCCCAAAATTAGTCAATGAATGGCCTAATAATGCTTCCTAGCATT
CTGATTTTTTTCATGATTCATTCAAAGAGCACCAATTCTATGCAACAATGAGACTCTACTCATT
CAATGGTTAAAATATTTTCTCTGAACATCATTTTAAGATGGTGGGGTTCCATATGCTTTTTCTT
GTCCAGTTACTGTTCATAGTTTGAAGACTTAAAAACAGCATGGATTCAAATAATACTTGTCTCT
CTGCTTGGTTGGAGGCTATTTCTTGACTTATTTCAGTCACTCAGAGGCGCTTTTTTTGCCCCTT
TTTTAATGCTGGAGAGTTTGAAACCAAGTCCTCATATATGTTAAGCATGCACTCTAGTACCAAG
CTACTCCCACAGCCTTAAGAAATATTGGTAACCAACTGGAATTTCCAGGTACTATGTTATATTC
TGAAAATGGGAGGTAATATTGCTATAGTCCCTGTTCTTATAGGGCTCACAGTGTCAAGTGATTT
TAGTGAGATGAGGTCTCGAGTTTATGTCCTAACTAGAATAAATTTGCCTTTTTTTTTTCATCAT
TTAAAACAGTGTTTCTCAACCTGTAGATCGTGACCCCTTTGGGGAGGGGTTGCCTAAACTAAGA
CCATAGGAATTTTTTGTTTACATTATGATTTATTTACATTATAATTCATAATAGTAGCAAAAAT
GATGAAATGATGAAAATAATTTTGTTGTTGGGGTCAGTACAGCATAAGGAACTGTATTAAACGA
TCACAGTATTAGGAAGGTTGAGAACCACTGACTTAAAGTCGGCTTTCTTAGGGTTTTTTGTTAG
TAAAATTTTTGGTTCTATTTGCAAGTGCAAACCACTTAACTAATTTGTGATCTCCAGTTCTTGG
CTGGAGAGGCCTTATTTTTGGTGATATATTTAATTTTGGTGGACTTGGGTTCTTTGCTTACATG
TTTCCCAGATTTTAAAGCAAAGAGAAAGCACAAATGTTTTATTGTGGAAGAAGAAGGCTTTCTA
ACACTAGTGATTATATGGAGCAGGGGTGAACCTTAGCTACTCGGCATTTGGTTTGGTTTGGTTC
TTTTCCTTTTCCTTTTCCTTTTCCCTTTTTTTTGAGGCAGGATCTTACTATGTAGCCTTTGCTG
CCTCTGCTCCCCGGGCCTGGGATCAAAGGTATGTGCCACCATACCAGTGTGTTATAAGGATTCC
TAGGAAAACTTCAAAAGGAAGCTATTGTAGCTTGTTTTTTTTTTTAATTACTGTTATTTATTTA
TTATGTTATTTAATTATGAAAACAAGCTCCAAACTGAAGTGGCTCTGAGGTAAATCAGGTGTGA
TTTTTGCATTAGTTTAGAAAATATGTAAGTGAAAGGTGACTAATGTTACCATTTCTAAAATATT
GTCCTAAACAAACAACTTAGAACATTTTATTTCAGCTCATGAATGGCTGTTCTAAATCTGTTGT
ATGTTAGACATACTCTGAACTACCTCTTTACTTAATGGGGAAGTTTCCTTAATAAAAGTTTGAC
AATTAA

hide sequence

RefSeq Acc Id:

XM_039105270 ⟹ XP_038961198

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	21,195,319 - 21,207,428 (-)	NCBI

RefSeq Acc Id:

XM_039105271 ⟹ XP_038961199

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	21,195,319 - 21,205,940 (-)	NCBI

RefSeq Acc Id:

XM_039105272 ⟹ XP_038961200

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	21,195,319 - 21,204,180 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101310	(Get FASTA)	NCBI Sequence Viewer
	XP_006234144	(Get FASTA)	NCBI Sequence Viewer
	XP_017447340	(Get FASTA)	NCBI Sequence Viewer
	XP_038961198	(Get FASTA)	NCBI Sequence Viewer
	XP_038961199	(Get FASTA)	NCBI Sequence Viewer
	XP_038961200	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00527	(Get FASTA)	NCBI Sequence Viewer
	EDM00528	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101310 ⟸ NM_001107840

- UniProtKB:

D3ZG35 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAFPPGLSAKMSERSDLLHFKFENYGDSMLQKMNKLREENKFCDVTVLIDDVEVQGHKIVFAA
GSPFLRDQFLLNDSREVKISILQSSEVGRQLLLSCYSGVLEFPEMELVNYLTAASFLQMSHIVE
RCTQALWKFIKPKQPMDSKEGSEPQSASPQSKEQQGDARGSPKQDLPCIHPSEDSMDMEDSDIQ
IVKVESIGDVSEDRSKKDQNQYISSEPTALHSSEPQHSLINSTVENRVNELDQSHLHNYALSYT
GNDDIIMTSKDVFGPNIRGVDKGLQWHHQCPKCTRVFRHLENYANHLKMHKLFMCLLCGKTFTQ
KGNLHRHMRVHAGIKPFQCKICGKTFSQKCSLQDHLNLHSGDKPHKCNYCDMVFAHKPVLRKHL
KQLHGKNSFDNANERSVQDLTVDFDSFACTTVTDSNCQPQPDATQVLDAGKLTQAVLSLRSDST
CVN

hide sequence

RefSeq Acc Id:

XP_006234144 ⟸ XM_006234082

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSERSDLLHFKFENYGDSMLQKMNKLREENKFCDVTVLIDDVEVQGHKIVFAAGSPFLRDQFLL
NDSREVKISILQSSEVGRQLLLSCYSGVLEFPEMELVNYLTAASFLQMSHIVERCTQALWKFIK
PKQPMDSKEGSEPQSASPQSKEQQGDARGSPKQDLPCIHPSEDSMDMEDSDIQIVKVESIGDVS
EDRSKKDQNQYISSEPTALHSSEPQHSLINSTVENRVNELDQSHLHNYALSYTGNDDIIMTSKD
VFGPNIRGVDKGLQWHHQCPKCTRVFRHLENYANHLKMHKLFMCLLCGKTFTQKGNLHRHMRVH
AGIKPFQCKICGKTFSQKCSLQDHLNLHSGDKPHKCNYCDMVFAHKPVLRKHLKQLHGKNSFDN
ANERSVQDLTVDFDSFACTTVTDSNCQPQPDATQVLDAGKLTQAVLSLRSDSTCVN

hide sequence

RefSeq Acc Id:

XP_017447340 ⟸ XM_017591851

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSERSDLLHFKFENYGDSMLQKMNKLREENKFCDVTVLIDDVEVQGHKIVFAAGSPFLRDQFLL
NDSREVKISILQSSEVGRQLLLSCYSGVLEFPEMELVNYLTAASFLQMSHIVERCTQALWKFIK
PKQPMDSKEGSEPQSASPQSKEQQGDARGSPKQDLPCIHPSEDSMDMEDSDIQIVKVESIGDVS
EDRSKKDQNQYISSEPTALHSSEPQHSLINSTVENRVNELDQSHLHNYALSYTGNDDIIMTSKD
VFGPNIRGVDKGLQWHHQCPKCTRVFRHLENYANHLKMHKLFMCLLCGKTFTQKGNLHRHMRVH
AGIKPFQCKICGKTFSQKCSLQDHLNLHSGDKPHKCNYCDMVFAHKPVLRKHLKQLHGKNSFDN
ANERSVQDLTVDFDSFACTTVTDSNCQPQPDATQVLDAGKLTQAVLSLRSDSTCVN

hide sequence

RefSeq Acc Id:

ENSRNOP00000012433 ⟸ ENSRNOT00000012433

RefSeq Acc Id:	XP_038961198 ⟸ XM_039105270
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961199 ⟸ XM_039105271
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961200 ⟸ XM_039105272
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000096920 ⟸ ENSRNOT00000110572

RefSeq Acc Id:

ENSRNOP00000078417 ⟸ ENSRNOT00000098247

RefSeq Acc Id:

ENSRNOP00000076901 ⟸ ENSRNOT00000119202

Protein Domains

BTB C2H2-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692047

Promoter ID:

EPDNEW_R2572

Type:

initiation region

Name:

Zbtb26_1

Description:

zinc finger and BTB domain containing 26

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	21,697,901 - 21,697,961	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308561	AgrOrtholog
Ensembl Genes	ENSRNOG00000009346	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000012433	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012433	UniProtKB/TrEMBL
Gene3D-CATH	3.30.710.10	UniProtKB/TrEMBL
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:311910	UniProtKB/TrEMBL
NCBI Gene	311910	ENTREZGENE
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zbtb26	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	D3ZG35	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zbtb26	zinc finger and BTB domain containing 26	Zbtb26_predicted	zinc finger and BTB domain containing 26 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zbtb26_predicted	zinc finger and BTB domain containing 26 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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