LOC120102084 (small nucleolar RNA SNORA26) - Rat Genome Database

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Gene: LOC120102084 (small nucleolar RNA SNORA26) Rattus norvegicus
Analyze
Symbol: LOC120102084
Name: small nucleolar RNA SNORA26
RGD ID: 41110934
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07072853.2
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,166,084 - 35,166,204 (-)NCBIGRCr8
mRatBN7.2314,768,362 - 14,768,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,768,362 - 14,768,482 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl310,355,839 - 10,355,959 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120102084
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,166,084 - 35,166,204 (-)NCBIGRCr8
mRatBN7.2314,768,362 - 14,768,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,768,362 - 14,768,482 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl310,355,839 - 10,355,959 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3p12NCBI
LOC124900464
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38205,121,417 - 5,121,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl205,121,417 - 5,121,539 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map20p12.3NCBI
T2T-CHM13v2.0205,160,839 - 5,160,961 (-)NCBIT2T-CHM13v2.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005503107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000079384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,768,362 - 14,768,482 (-)Ensembl
RefSeq Acc Id: XR_005503107
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,166,084 - 35,166,204 (-)NCBI
mRatBN7.2314,768,362 - 14,768,482 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50176 BioCyc
Ensembl Genes ENSRNOG00000058802 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000079384 ENTREZGENE
NCBI Gene LOC120102084 ENTREZGENE
PhenoGen LOC120102084 PhenoGen
RatGTEx ENSRNOG00000058802 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120102084  small nucleolar RNA SNORA26  AABR07072853.2    Data merged from RGD:15012064 737654 PROVISIONAL
2021-01-27 LOC120102084  small nucleolar RNA SNORA26      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07072853.2        Symbol and Name status set to provisional 45752 PROVISIONAL