Olfm1 (olfactomedin 1) - Rat Genome Database

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Gene: Olfm1 (olfactomedin 1) Rattus norvegicus
Analyze
Symbol: Olfm1
Name: olfactomedin 1
RGD ID: 620320
Description: Predicted to enable amyloid-beta binding activity and identical protein binding activity. Predicted to be involved in several processes, including heart development; neuronal signal transduction; and regulation of gene expression. Predicted to act upstream of or within negative regulation of amyloid-beta formation and negative regulation of neuron migration. Predicted to be located in several cellular components, including axonal growth cone; neuronal cell body; and synaptic membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space and glutamatergic synapse. Predicted to be extrinsic component of synaptic membrane. Orthologous to human OLFM1 (olfactomedin 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1B426B; D2Sut1e; neuronal olfactomedin-related ER localized protein; Noe1; noelin; olfactomedin related ER localized protein; olfactomedin-1; pancortin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2311,520,522 - 11,558,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl311,520,729 - 11,558,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx314,601,361 - 14,626,222 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0323,186,526 - 23,211,391 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0321,440,746 - 21,465,605 (+)NCBIRnor_WKY
Rnor_6.036,761,031 - 6,798,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl36,773,813 - 6,798,737 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0312,114,825 - 12,152,487 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.437,170,421 - 7,195,345 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.137,170,720 - 7,195,645 (+)NCBI
Celera36,324,040 - 6,348,939 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-acetamidofluorene  (ISO)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clomiphene  (ISO)
cocaine  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
coumestrol  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl phthalate  (EXP)
diethylstilbestrol  (ISO)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
estrone  (ISO)
ethanol  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hexestrol  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mestranol  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phytoestrogen  (ISO)
progesterone  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
triclosan  (ISO)
triptonide  (ISO)
undecane  (EXP)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
zearalenone  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Four structurally distinct neuron-specific olfactomedin-related glycoproteins produced by differential promoter utilization and alternative mRNA splicing from a single gene. Danielson PE, etal., J Neurosci Res 1994 Jul 1;38(4):468-78.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15927402   PMID:16751333   PMID:22632720   PMID:22923615   PMID:22992957   PMID:25218043  


Genomics

Comparative Map Data
Olfm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2311,520,522 - 11,558,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl311,520,729 - 11,558,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx314,601,361 - 14,626,222 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0323,186,526 - 23,211,391 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0321,440,746 - 21,465,605 (+)NCBIRnor_WKY
Rnor_6.036,761,031 - 6,798,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl36,773,813 - 6,798,737 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0312,114,825 - 12,152,487 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.437,170,421 - 7,195,345 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.137,170,720 - 7,195,645 (+)NCBI
Celera36,324,040 - 6,348,939 (+)NCBICelera
Cytogenetic Map3p12NCBI
OLFM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389135,075,505 - 135,121,184 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9135,075,422 - 135,121,180 (+)EnsemblGRCh38hg38GRCh38
GRCh379137,967,351 - 138,013,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369137,106,910 - 137,152,851 (+)NCBINCBI36Build 36hg18NCBI36
Build 349135,193,115 - 135,195,180NCBI
Celera9108,481,187 - 108,526,613 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9107,430,180 - 107,476,065 (+)NCBIHuRef
CHM1_19138,116,020 - 138,161,923 (+)NCBICHM1_1
T2T-CHM13v2.09147,297,503 - 147,344,934 (+)NCBIT2T-CHM13v2.0
Olfm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39228,083,105 - 28,120,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl228,083,004 - 28,120,748 (+)EnsemblGRCm39 Ensembl
GRCm38228,193,093 - 28,230,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl228,192,992 - 28,230,736 (+)EnsemblGRCm38mm10GRCm38
MGSCv37228,048,613 - 28,086,256 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36228,015,102 - 28,052,745 (+)NCBIMGSCv36mm8
Celera227,895,841 - 27,933,529 (+)NCBICelera
Cytogenetic Map2A3NCBI
Olfm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049557336,189 - 30,455 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049557336,189 - 30,455 (-)NCBIChiLan1.0ChiLan1.0
OLFM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19135,205,710 - 135,252,598 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9135,205,710 - 135,252,598 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09106,206,133 - 106,253,386 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
OLFM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1950,972,035 - 50,996,770 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl950,979,146 - 50,996,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha950,254,990 - 50,292,647 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0951,848,892 - 51,886,555 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1950,609,021 - 50,646,646 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0950,952,656 - 50,990,375 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0951,030,732 - 51,068,419 (+)NCBIUU_Cfam_GSD_1.0
Olfm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,060,875 - 201,083,731 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366692,291,228 - 2,314,148 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366692,291,328 - 2,314,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OLFM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1274,224,454 - 274,261,328 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11274,236,241 - 274,261,322 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21308,316,240 - 308,353,274 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OLFM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1123,028,681 - 3,063,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660582,080,815 - 2,121,416 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Olfm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247602,842,340 - 2,876,958 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247602,842,177 - 2,876,966 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Olfm1
120 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:749
Count of miRNA genes:289
Interacting mature miRNAs:353
Transcripts:ENSRNOT00000013443, ENSRNOT00000044951, ENSRNOT00000065953
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat

Markers in Region
D78264  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2311,557,328 - 11,557,449 (+)MAPPERmRatBN7.2
Rnor_6.036,797,827 - 6,797,947NCBIRnor6.0
Rnor_5.0312,151,576 - 12,151,696UniSTSRnor5.0
RGSC_v3.437,194,435 - 7,194,555UniSTSRGSC3.4
Celera36,348,029 - 6,348,149UniSTS
Cytogenetic Map3p12UniSTS
AW742568  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2311,557,346 - 11,557,592 (+)MAPPERmRatBN7.2
Rnor_6.036,797,845 - 6,798,090NCBIRnor6.0
Rnor_5.0312,151,594 - 12,151,839UniSTSRnor5.0
RGSC_v3.437,194,453 - 7,194,698UniSTSRGSC3.4
Celera36,348,047 - 6,348,292UniSTS
Cytogenetic Map3p12UniSTS
Olfm1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25113,761,244 - 113,761,328 (+)MAPPERmRatBN7.2
mRatBN7.2311,540,374 - 11,540,458 (+)MAPPERmRatBN7.2
Rnor_6.05117,759,111 - 117,759,194NCBIRnor6.0
Rnor_6.036,780,879 - 6,780,962NCBIRnor6.0
Rnor_5.0312,134,628 - 12,134,711UniSTSRnor5.0
Rnor_5.05121,698,058 - 121,698,141UniSTSRnor5.0
Celera5112,322,358 - 112,322,441UniSTS
Celera36,331,101 - 6,331,184UniSTS
Cytogenetic Map3p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 74 19 15 8
Low 3 42 27 11 19 11 8 11 16 24 3 8
Below cutoff 1 30 30 30 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013443   ⟹   ENSRNOP00000013443
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl311,533,308 - 11,558,239 (+)Ensembl
Rnor_6.0 Ensembl36,773,813 - 6,798,737 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000065953   ⟹   ENSRNOP00000060981
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl311,533,061 - 11,542,177 (+)Ensembl
Rnor_6.0 Ensembl36,773,813 - 6,782,681 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104931   ⟹   ENSRNOP00000077356
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl311,520,729 - 11,558,239 (+)Ensembl
RefSeq Acc Id: NM_053573   ⟹   NP_446025
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2311,533,308 - 11,558,239 (+)NCBI
Rnor_6.036,773,813 - 6,798,737 (+)NCBI
Rnor_5.0312,114,825 - 12,152,487 (+)NCBI
RGSC_v3.437,170,421 - 7,195,345 (+)RGD
Celera36,324,040 - 6,348,939 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233875   ⟹   XP_006233937
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2311,520,522 - 11,558,240 (+)NCBI
Rnor_6.036,761,031 - 6,798,739 (+)NCBI
Rnor_5.0312,114,825 - 12,152,487 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233876   ⟹   XP_006233938
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2311,533,288 - 11,542,182 (+)NCBI
Rnor_6.036,773,777 - 6,782,686 (+)NCBI
Rnor_5.0312,114,825 - 12,152,487 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233877   ⟹   XP_006233939
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2311,520,528 - 11,542,182 (+)NCBI
Rnor_6.036,761,031 - 6,782,686 (+)NCBI
Rnor_5.0312,114,825 - 12,152,487 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_446025   ⟸   NM_053573
- Peptide Label: precursor
- UniProtKB: Q62608 (UniProtKB/Swiss-Prot),   Q62609 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006233937   ⟸   XM_006233875
- Peptide Label: isoform X1
- UniProtKB: Q62609 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006233939   ⟸   XM_006233877
- Peptide Label: isoform X3
- UniProtKB: Q62609 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006233938   ⟸   XM_006233876
- Peptide Label: isoform X2
- UniProtKB: Q62609 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000060981   ⟸   ENSRNOT00000065953
RefSeq Acc Id: ENSRNOP00000013443   ⟸   ENSRNOT00000013443
RefSeq Acc Id: ENSRNOP00000077356   ⟸   ENSRNOT00000104931
Protein Domains
Noelin-1   Olfactomedin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62609-F1-model_v2 AlphaFold Q62609 1-485 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691931
Promoter ID:EPDNEW_R2455
Type:initiation region
Name:Olfm1_1
Description:olfactomedin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.036,773,812 - 6,773,872EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620320 AgrOrtholog
BioCyc Gene G2FUF-50285 BioCyc
Ensembl Genes ENSRNOG00000009862 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013443 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000060981.2 UniProtKB/TrEMBL
  ENSRNOP00000077356 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013443 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000065953.3 UniProtKB/TrEMBL
  ENSRNOT00000104931 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Noelin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Noelin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfac-like_dom UniProtKB/Swiss-Prot
  Quino_amine_DH_bsu UniProtKB/Swiss-Prot
KEGG Report rno:93667 UniProtKB/Swiss-Prot
NCBI Gene 93667 ENTREZGENE
PANTHER PTHR23192:SF34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Noelin-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLF UniProtKB/Swiss-Prot
PhenoGen Olfm1 PhenoGen
PROSITE ER_TARGET UniProtKB/Swiss-Prot
  OLF UniProtKB/Swiss-Prot
SMART OLF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50969 UniProtKB/Swiss-Prot
UniProt A0A8L2QVC3_RAT UniProtKB/TrEMBL
  NOE1_RAT UniProtKB/Swiss-Prot
  Q62608 ENTREZGENE
  Q62609 ENTREZGENE
UniProt Secondary Q62606 UniProtKB/Swiss-Prot
  Q62607 UniProtKB/Swiss-Prot
  Q62608 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Olfm1  olfactomedin 1    olfactomedin related ER localized protein  Name updated 1299863 APPROVED
2002-08-07 Olfm1  olfactomedin related ER localized protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_transcript four different transcripts produced from differential promoter utilization and alternative splicing 729021