Olfm1 (olfactomedin 1) - Rat Genome Database

Name: Olfm1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Olfm1 (olfactomedin 1) Rattus norvegicus

Analyze

Symbol:

Olfm1

Name:

olfactomedin 1

RGD ID:

620320

Description:

Predicted to have amyloid-beta binding activity and identical protein binding activity. Predicted to be involved in several processes, including heart development; negative regulation of macromolecule metabolic process; and regulation of neurogenesis. Predicted to localize to several cellular components, including AMPA glutamate receptor complex; axonal growth cone; and glutamatergic synapse. Orthologous to human OLFM1 (olfactomedin 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

1B426B; D2Sut1e; neuronal olfactomedin-related ER localized protein; Noe1; noelin; olfactomedin related ER localized protein; olfactomedin-1; pancortin

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OLFM1 (olfactomedin 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Olfm1 (olfactomedin 1)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Olfm1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OLFM1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OLFM1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Olfm1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OLFM1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	OLFM1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Olfm1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	OLFM1 (olfactomedin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Olfm1 (olfactomedin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	olfm1b (olfactomedin 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	olfm1a (olfactomedin 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam)
Caenorhabditis elegans (roundworm):	cof-2	Alliance	DIOPT (OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG6867	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	unc-122	Alliance	DIOPT (OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	11,520,522 - 11,558,240 (+)	NCBI
Rnor_6.0 Ensembl	3	6,773,813 - 6,798,737 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	6,761,031 - 6,798,739 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	7,170,421 - 7,195,345 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	7,170,720 - 7,195,645 (+)	NCBI
Celera	3	6,324,040 - 6,348,939 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ehlers-Danlos syndrome classic type 1 (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-acetamidofluorene (ISO)

3-methylcholanthrene (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (EXP)

cadmium dichloride (EXP)

carbon nanotube (ISO)

cisplatin (ISO)

clomiphene (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

coumestrol (ISO)

dibutyl phthalate (EXP,ISO)

diethyl phthalate (EXP)

diethylstilbestrol (ISO)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

entinostat (ISO)

estrone (ISO)

ethanol (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

hexestrol (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mestranol (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

oxaliplatin (EXP)

paracetamol (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

progesterone (ISO)

raloxifene (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

topotecan (EXP)

triclosan (ISO)

undecane (EXP)

valproic acid (EXP,ISO)

vorinostat (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

atrioventricular valve formation (ISS)

cardiac epithelial to mesenchymal transition (ISS)

negative regulation of amyloid-beta formation (ISO)

negative regulation of gene expression (ISS)

negative regulation of neuron migration (ISO)

nervous system development (IEA)

neuronal signal transduction (ISO,ISS)

positive regulation of apoptotic process (ISO,ISS)

positive regulation of epithelial to mesenchymal transition (ISS)

positive regulation of gene expression (ISS)

regulation of amyloid-beta formation (ISO)

regulation of axon extension (ISO,ISS)

Cellular Component

AMPA glutamate receptor complex (ISO)

axon (ISO,ISS)

axonal growth cone (ISO,ISS)

endoplasmic reticulum (ISO,ISS)

extracellular space (ISO,ISS)

extrinsic component of synaptic membrane (ISO)

glutamatergic synapse (ISO)

neuronal cell body (ISO,ISS)

perikaryon (IEA)

synaptic membrane (ISO)

Molecular Function

amyloid-beta binding (ISO)

identical protein binding (ISO)

protein binding (ISO)

References

References - curated


1.	Danielson PE, etal., J Neurosci Res 1994 Jul 1;38(4):468-78.
2.	GOA data from the GO Consortium
3.	MGD data from the GO Consortium
4.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15927402	PMID:16751333	PMID:22632720	PMID:22923615	PMID:22992957	PMID:25218043

Genomics

Comparative Map Data

Olfm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	11,520,522 - 11,558,240 (+)	NCBI
Rnor_6.0 Ensembl	3	6,773,813 - 6,798,737 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	6,761,031 - 6,798,739 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	7,170,421 - 7,195,345 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	7,170,720 - 7,195,645 (+)	NCBI
Celera	3	6,324,040 - 6,348,939 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

OLFM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	135,075,422 - 135,121,179 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	9	135,075,422 - 135,121,180 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	135,075,505 - 135,121,184 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	137,967,089 - 138,013,030 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	9	137,967,351 - 138,013,030 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	137,106,910 - 137,152,851 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	9	135,193,115 - 135,195,180	NCBI
Celera	9	108,481,187 - 108,526,613 (+)	NCBI
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	107,430,180 - 107,476,065 (+)	NCBI		HuRef
CHM1_1	9	138,116,020 - 138,161,923 (+)	NCBI		CHM1_1

Olfm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	28,083,105 - 28,120,748 (+)	NCBI	GRCm39		mm39
GRCm38	2	28,193,093 - 28,230,736 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	28,192,992 - 28,230,736 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	28,048,613 - 28,086,256 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	28,015,102 - 28,052,745 (+)	NCBI			mm8
Celera	2	27,895,841 - 27,933,529 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI

Olfm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955733	6,189 - 30,455 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955733	6,189 - 30,455 (-)	NCBI	ChiLan1.0	ChiLan1.0

OLFM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	135,205,710 - 135,252,598 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	135,205,710 - 135,252,598 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	106,206,133 - 106,253,386 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

OLFM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	9	50,979,146 - 50,996,602 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	9	50,972,035 - 50,996,770 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Olfm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936669	2,291,328 - 2,314,414 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OLFM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	274,224,454 - 274,261,328 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	274,236,241 - 274,261,322 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	308,316,240 - 308,353,274 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OLFM1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	3,028,681 - 3,063,754 (-)	NCBI

Olfm1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	2,842,177 - 2,876,966 (+)	NCBI

Position Markers

D78264

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	6,797,827 - 6,797,947	NCBI	Rnor6.0
Rnor_5.0	3	12,151,576 - 12,151,696	UniSTS	Rnor5.0
RGSC_v3.4	3	7,194,435 - 7,194,555	UniSTS	RGSC3.4
Celera	3	6,348,029 - 6,348,149	UniSTS
Cytogenetic Map	3	p12	UniSTS

AW742568

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	6,797,845 - 6,798,090	NCBI	Rnor6.0
Rnor_5.0	3	12,151,594 - 12,151,839	UniSTS	Rnor5.0
RGSC_v3.4	3	7,194,453 - 7,194,698	UniSTS	RGSC3.4
Celera	3	6,348,047 - 6,348,292	UniSTS
Cytogenetic Map	3	p12	UniSTS

Olfm1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	117,759,111 - 117,759,194	NCBI	Rnor6.0
Rnor_6.0	3	6,780,879 - 6,780,962	NCBI	Rnor6.0
Rnor_5.0	3	12,134,628 - 12,134,711	UniSTS	Rnor5.0
Rnor_5.0	5	121,698,058 - 121,698,141	UniSTS	Rnor5.0
Celera	3	6,331,101 - 6,331,184	UniSTS
Celera	5	112,322,358 - 112,322,441	UniSTS
Cytogenetic Map	3	p12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	25786001	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	28136884	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	28500807	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	32972944	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	37891710	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	39773425	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	95176874	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	2631421	33477544	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	2631421	48562146	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	3285929	28136884	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	3285929	28136884	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	5654639	25105730	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	6000748	51687917	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	6000748	51687917	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	6000866	34394121	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	6000866	34394121	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	0.0000000293	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	6000866	34394121	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	749
Count of miRNA genes:	289
Interacting mature miRNAs:	353
Transcripts:	ENSRNOT00000013443, ENSRNOT00000044951, ENSRNOT00000065953
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									74	19	15	8
Low	3	42	27	11	19	11	8	11		16	24	3	8
Below cutoff		1	30	30		30					2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U03414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U03415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U03416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U03417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000013443 ⟹ ENSRNOP00000013443

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	6,773,813 - 6,798,737 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000065953 ⟹ ENSRNOP00000060981

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	6,773,813 - 6,782,681 (+)	Ensembl

RefSeq Acc Id:

NM_053573 ⟹ NP_446025

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	11,533,308 - 11,558,239 (+)	NCBI
Rnor_6.0	3	6,773,813 - 6,798,737 (+)	NCBI
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI
RGSC_v3.4	3	7,170,421 - 7,195,345 (+)	RGD
Celera	3	6,324,040 - 6,348,939 (+)	RGD

Sequence:

show sequence

AACCTGGTGGCCCTTCTCGACAGCGGAGCGCGCGGGGACGCTGCAGCGGCGGGCAACGCGGGCA
GGCAGCGCGCTCCAGGCAGGGCCGCCTGGTCACCTCCCGGCGCCGGGGCGGCGCGGCGATGGCC
AGGGCGCAGAGGGAGGCAGAGACCGGCGGGCGACGGCGGGCGGAGGGGGCGCGGGGACGCGGCC
GGGCGCCCCTGCCCGCCCTGGTGCCCGCCGCCTAAGGCTGCCCGGGGCGCGGGAGCCGGCGCCG
GCGCGGCGCGGGCGCAGGAGACCACTCGAGGCGCGATGTCGGTGCCGCTGCTGAAGATCGGGGT
CGTGCTAAGCACCATGGCCATGATCACCAACTGGATGTCCCAGACGCTGCCCTCGCTGGTGGGC
CTCAATACCACCCGGCTCTCGGCCGCCAGCGGCGGGACGCTGGACCGCAGCACCGGCGTGTTGC
CCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTAT
CTGCACGGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGG
CAGCTACTGGAGAAGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGGACTCAGA
GAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGCA
GGTGGAGGAGAGCCATAAGCAGCATCTGGCCAGGCAGTTCAAGGCAATAAAAGCGAAAATGGAT
GAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGT
TTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAAATTGGCGCCTA
TGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAA
AAACTAGCCTGCGGGAAGCTGACAGGCATAAGTGACCCGGTGACTGTCAAGACCTCAGGCTCAA
GGTTCGGGTCCTGGATGACAGACCCACTGGCCCCAGAAGGTGATAACCGGGTCTGGTACATGGA
TGGTTATCACAACAACCGCTTTGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAACACGGAT
AATTTTACCTCGCACCGTCTCCCACACCCCTGGTCGGGCACGGGCCAGGTGGTCTACAATGGCT
CCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGACGAT
CCTGAAGACGCGGAGCCTGGACTACGCTGGCTACAACAACATGTACCACTATGCCTGGGGCGGC
CACTCAGACATCGACCTCATGGTGGACGAGAACGGGCTCTGGGCCGTCTACGCCACAAACCAGA
ACGCAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAAATCCTCCAGACCTGGAA
CACCAGCTACCCCAAGCGCAGCGCCGGCGAGGCCTTCATCATCTGCGGCACCCTCTACGTCACC
AACGGTTACTCGGGGGGCACCAAGGTCCACTATGCCTACCAAACCAACGCCTCGACCTACGAGT
ACATTGACATCCCCTTCCAGAACAAATACTCTCACATCTCCATGCTGGACTACAACCCTAAAGA
CCGCGCGCTGTACGCCTGGAACAACGGCCATCAGACCCTCTACAACGTCACCCTCTTCCACGTC
ATCCGCTCCGATGAGTTGTAGCTCCCGCTTTTCCAGAAGCCAAGGGTCCAAGTCCTCACCCCGA
GGACATTTTCCATAAAACAGCTGCCAAATGATTCCAAGAATACTATAACAGTCCTGATTTTGAG
AAATCAGCGCAATTTTGACGCCGAGAGATGGTGTCCTCTCTGTGTTCCTCCTGCTCGTGCAGGT
GGGCCACAGATTTCAGAAGAAACCGCCATGTATGTGGATGGAACTGCAGCCCAAGGCTCCTTGG
CTGTCCCCATCCCACCCCATCCCTCTCTGGTCCAATAACTCAAAGAAGCAAGGCGATGACTGTT
GGCCCCTCTCACCCAAGAACAACCCACTGCTAAGATTGCATGGACATTTCCTTAGGTCGTGCCC
AGCGAGATGACGTGATGGCCATTCTCCCCACCCACAGCCCCCAGCCCCCGTGGCGCTCGGTGTA
GGCTGCTTCGGCCCACACGTATCGCAGCTGCCTTTTTCTTGACTGTGTTGTTGTCTCTTAGATT
AACTGTGCTGAGACTCCCGGTAGCTCATGGACCTGTGTCTAGTACTTTCCCGAAGCGATGGTGG
GTGTGCGTAGAGTGAAGTTGCTGTACCCACGTTGTTGAACTTGCGTACCCTGTAGCTAGATCGT
GAGGTGTCCGTCTGTTATCCCCCCCAAGGTGGTAACTCCGTGTGTTCAATTTATGCAATGAATG
TTGTCATGCGATGCTGTAGTTTGGATTGATAAGTGGATGGTTTCTGTTTCTAAAAAGAAAAAAA
AATCAGTGTTCGCCCTTATAGGAGACATAGTCAAGTTCATGTTGATAATAACCCAGTGAAATTC
TTCTCTTGTCAAGTTATCTGAATTGTGTAACCATAGATGGGAAGGACGCATCTTGGGAAACTTC
AGTTTCCTACGGGAAGGAACTCCCCAAGGGCAGCCATGTGTGAAAAGATCATTTTTTAAAGAAA
AAAAAAATAAGTCAAAGAGGGCAACTTTGTACTATTCAGTTATCTAAGGAACAATAAAGATATT
AGGAGAT

hide sequence

RefSeq Acc Id:

XM_006233875 ⟹ XP_006233937

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	11,520,522 - 11,558,240 (+)	NCBI
Rnor_6.0	3	6,761,031 - 6,798,739 (+)	NCBI
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI

Sequence:

show sequence

CCTCCTCCCTTCTCCGCGCAAGCAAGGCTCACGGGTCCCTCAGCGCCACCCCCGCCCGCGCCCC
TCACCGAGCAAACTTTTGGCATCGCTGCAGCCCGGGCGCGCCGCCGAGCTCCGCAGGGCGCGCC
TCTCCGCTGAGCCTGGGCGCGCGGGGACCCGCGTGGCGCGCAGGGAAAGCAAGCGCAGCCCCCG
CCCCGCCAGCCCAGCCCTGCCCGAGAGGCAGTCGCGCCGGAACCGGTACCATAAATATGCAGAG
CGGAGGCTCAGCGCAGCAGAGCCCGCGCGCCGCCCGCCCCGGCTGCTAAGCAGGCGCCGCCGGA
GCCCGAGCCGCGGCCGGAGCCCCAGCCCCAACCACAGCCGGGAGCGCGTCCACGTCCCCGCAGC
CGCCGACCGCCAGCACCCAGGCCCTGCACGCTAGGACGTCGGAGTGGCCGCGAGACATGCAACC
GGCCCGGAAGCTCCTCAGCCTCCTGGTCCTCCTGGTGATGGGCACCGAACTCACCCAAGTGTTG
CCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTA
TCTGCACGGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAG
GCAGCTACTGGAGAAGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGGACTCAG
AGAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGC
AGGTGGAGGAGAGCCATAAGCAGCATCTGGCCAGGCAGTTCAAGGCAATAAAAGCGAAAATGGA
TGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAG
TTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAAATTGGCGCCT
ATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCA
AAAACTAGCCTGCGGGAAGCTGACAGGCATAAGTGACCCGGTGACTGTCAAGACCTCAGGCTCA
AGGTTCGGGTCCTGGATGACAGACCCACTGGCCCCAGAAGGTGATAACCGGGTCTGGTACATGG
ATGGTTATCACAACAACCGCTTTGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAACACGGA
TAATTTTACCTCGCACCGTCTCCCACACCCCTGGTCGGGCACGGGCCAGGTGGTCTACAATGGC
TCCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGACGA
TCCTGAAGACGCGGAGCCTGGACTACGCTGGCTACAACAACATGTACCACTATGCCTGGGGCGG
CCACTCAGACATCGACCTCATGGTGGACGAGAACGGGCTCTGGGCCGTCTACGCCACAAACCAG
AACGCAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAAATCCTCCAGACCTGGA
ACACCAGCTACCCCAAGCGCAGCGCCGGCGAGGCCTTCATCATCTGCGGCACCCTCTACGTCAC
CAACGGTTACTCGGGGGGCACCAAGGTCCACTATGCCTACCAAACCAACGCCTCGACCTACGAG
TACATTGACATCCCCTTCCAGAACAAATACTCTCACATCTCCATGCTGGACTACAACCCTAAAG
ACCGCGCGCTGTACGCCTGGAACAACGGCCATCAGACCCTCTACAACGTCACCCTCTTCCACGT
CATCCGCTCCGATGAGTTGTAGCTCCCGCTTTTCCAGAAGCCAAGGGTCCAAGTCCTCACCCCG
AGGACATTTTCCATAAAACAGCTGCCAAATGATTCCAAGAATACTATAACAGTCCTGATTTTGA
GAAATCAGCGCAATTTTGACGCCGAGAGATGGTGTCCTCTCTGTGTTCCTCCTGCTCGTGCAGG
TGGGCCACAGATTTCAGAAGAAACCGCCATGTATGTGGATGGAACTGCAGCCCAAGGCTCCTTG
GCTGTCCCCATCCCACCCCATCCCTCTCTGGTCCAATAACTCAAAGAAGCAAGGCGATGACTGT
TGGCCCCTCTCACCCAAGAACAACCCACTGCTAAGATTGCATGGACATTTCCTTAGGTCGTGCC
CAGCGAGATGACGTGATGGCCATTCTCCCCACCCACAGCCCCCAGCCCCCGTGGCGCTCGGTGT
AGGCTGCTTCGGCCCACACGTATCGCAGCTGCCTTTTTCTTGACTGTGTTGTTGTCTCTTAGAT
TAACTGTGCTGAGACTCCCGGTAGCTCATGGACCTGTGTCTAGTACTTTCCCGAAGCGATGGTG
GGTGTGCGTAGAGTGAAGTTGCTGTACCCACGTTGTTGAACTTGCGTACCCTGTAGCTAGATCG
TGAGGTGTCCGTCTGTTATCCCCCCCAAGGTGGTAACTCCGTGTGTTCAATTTATGCAATGAAT
GTTGTCATGCGATGCTGTAGTTTGGATTGATAAGTGGATGGTTTCTGTTTCTAAAAAGAAAAAA
AAATCAGTGTTCGCCCTTATAGGAGACATAGTCAAGTTCATGTTGATAATAACCCAGTGAAATT
CTTCTCTTGTCAAGTTATCTGAATTGTGTAACCATAGATGGGAAGGACGCATCTTGGGAAACTT
CAGTTTCCTACGGGAAGGAACTCCCCAAGGGCAGCCATGTGTGAAAAGATCATTTTTTAAAGAA
AAAAAAAATAAGTCAAAGAGGGCAACTTTGTACTATTCAGTTATCTAAGGAACAATAAAGATAT
TAGGAGATAT

hide sequence

RefSeq Acc Id:

XM_006233876 ⟹ XP_006233938

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	11,533,288 - 11,542,182 (+)	NCBI
Rnor_6.0	3	6,773,777 - 6,782,686 (+)	NCBI
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI

Sequence:

show sequence

GCCGCGGCCCCCGCGCACATCCCGCGCCGTGCTCAGAACCTGGTGGCCCTTCTCGACAGCGGAG
CGCGCGGGGACGCTGCAGCGGCGGGCAACGCGGGCAGGCAGCGCGCTCCAGGCAGGGCCGCCTG
GTCACCTCCCGGCGCCGGGGCGGCGCGGCGATGGCCAGGGCGCAGAGGGAGGCAGAGACGGGCG
GGCGGCGGCGGGCGGAGGGGGCGCGGGGACGCGGCCGGGCGCCCCTGCCCGCCCTGGTGCCCGC
CGCCTAAGGCTGCCCGGGGCGCGGGAGCCGGCGCCGGCGCGGCGCGGGCGCAGGAGACCACTCG
AGGCGCGATGTCGGTGCCGCTGCTGAAGATCGGGGTCGTGCTAAGCACCATGGCCATGATCACC
AACTGGATGTCCCAGACGCTGCCCTCGCTGGTGGGCCTCAATACCACCCGGCTCTCGGCCGCCA
GCGGCGGGACGCTGGACCGCAGCACCGGCGTGTTGCCCACCAACCCCGAGGAGAGCTGGCAGGT
GTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTATCTGCACGGTGGTCGCCCCCCAGCAGACC
ATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAGGTGCAAAACATGT
CTCAATCCATAGAAGTCTTGGACAGGCGGACTCAGAGAGACCTGCAGTACGTGGAGAAGATGGA
GAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGCAGGTGGAGGAGAGCCATAAGCAGCATCTG
GCCAGGCAGTTCAAGGGCTAACTTAAAGAGTTTTTTCAATGCGCCAGTGACTGAAGAAGCAGTC
CCCCCATGTAACCATGAGAGAGCCAGAGAGCTTTTTGCACCATGCATTTTTATGATTCTTTTCC
AATCCTTAGCGCCATTTCACTAAGGAACCTTGAATCCAGCCAGGATCCTCCTTTTGCATGCGAC
TCTAGATGCATCCCATGAATAGTTTGAACCCTTCCTTGTCAATGCACTTTTTGAAAGAGAAAGA
AAAAAAAACCCACAAACTTTGTGTATGTGACCTAAAGCATGTAACTTTAAGATGCTGCATTCTC
AACTGACTAATAAAGGCCTTTCCCAAATA

hide sequence

RefSeq Acc Id:

XM_006233877 ⟹ XP_006233939

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	11,520,528 - 11,542,182 (+)	NCBI
Rnor_6.0	3	6,761,031 - 6,782,686 (+)	NCBI
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI

Sequence:

show sequence

CCTCCTCCCTTCTCCGCGCAAGCAAGGCTCACGGGTCCCTCAGCGCCACCCCCGCCCGCGCCCC
TCACCGAGCAAACTTTTGGCATCGCTGCAGCCCGGGCGCGCCGCCGAGCTCCGCAGGGCGCGCC
TCTCCGCTGAGCCTGGGCGCGCGGGGACCCGCGTGGCGCGCAGGGAAAGCAAGCGCAGCCCCCG
CCCCGCCAGCCCAGCCCTGCCCGAGAGGCAGTCGCGCCGGAACCGGTACCATAAATATGCAGAG
CGGAGGCTCAGCGCAGCAGAGCCCGCGCGCCGCCCGCCCCGGCTGCTAAGCAGGCGCCGCCGGA
GCCCGAGCCGCGGCCGGAGCCCCAGCCCCAACCACAGCCGGGAGCGCGTCCACGTCCCCGCAGC
CGCCGACCGCCAGCACCCAGGCCCTGCACGCTAGGACGTCGGAGTGGCCGCGAGACATGCAACC
GGCCCGGAAGCTCCTCAGCCTCCTGGTCCTCCTGGTGATGGGCACCGAACTCACCCAAGTGTTG
CCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTA
TCTGCACGGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAG
GCAGCTACTGGAGAAGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGGACTCAG
AGAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGC
AGGTGGAGGAGAGCCATAAGCAGCATCTGGCCAGGCAGTTCAAGGGCTAACTTAAAGAGTTTTT
TCAATGCGCCAGTGACTGAAGAAGCAGTCCCCCCATGTAACCATGAGAGAGCCAGAGAGCTTTT
TGCACCATGCATTTTTATGATTCTTTTCCAATCCTTAGCGCCATTTCACTAAGGAACCTTGAAT
CCAGCCAGGATCCTCCTTTTGCATGCGACTCTAGATGCATCCCATGAATAGTTTGAACCCTTCC
TTGTCAATGCACTTTTTGAAAGAGAAAGAAAAAAAAACCCACAAACTTTGTGTATGTGACCTAA
AGCATGTAACTTTAAGATGCTGCATTCTCAACTGACTAATAAAGGCCTTTCCCAAATA

hide sequence

RefSeq Acc Id:

XM_017592085 ⟹ XP_017447574

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	6,780,534 - 6,798,739 (+)	NCBI

Sequence:

show sequence

ATAAACGTAGAGTGAAATGGCCCCGAAGCCCCATGCTTCCCTGATCTGTCAGAGTTCTCCTGGA
AGAGGACGGGGAACGTTTACCCAGCCAATCCGCAGTGCTTGGGGAGTTCTTGGTCCTAACGGCC
TGATGCTGGTGATTAACTGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGGACT
CAGAGAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGTCCAAGTTCA
GGCAGGTGGAGGAGAGCCATAAGCAGCATCTGGCCAGGCAGTTCAAGGCAATAAAAGCGAAAAT
GGATGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTG
CAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAAATTGGCG
CCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCAT
GCAAAAACTAGCCTGCGGGAAGCTGACAGGCATAAGTGACCCGGTGACTGTCAAGACCTCAGGC
TCAAGGTTCGGGTCCTGGATGACAGACCCACTGGCCCCAGAAGGTGATAACCGGGTCTGGTACA
TGGATGGTTATCACAACAACCGCTTTGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAACAC
GGATAATTTTACCTCGCACCGTCTCCCACACCCCTGGTCGGGCACGGGCCAGGTGGTCTACAAT
GGCTCCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGA
CGATCCTGAAGACGCGGAGCCTGGACTACGCTGGCTACAACAACATGTACCACTATGCCTGGGG
CGGCCACTCAGACATCGACCTCATGGTGGACGAGAACGGGCTCTGGGCCGTCTACGCCACAAAC
CAGAACGCAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAAATCCTCCAGACCT
GGAACACCAGCTACCCCAAGCGCAGCGCCGGCGAGGCCTTCATCATCTGCGGCACCCTCTACGT
CACCAACGGTTACTCGGGGGGCACCAAGGTCCACTATGCCTACCAAACCAACGCCTCGACCTAC
GAGTACATTGACATCCCCTTCCAGAACAAATACTCTCACATCTCCATGCTGGACTACAACCCTA
AAGACCGCGCGCTGTACGCCTGGAACAACGGCCATCAGACCCTCTACAACGTCACCCTCTTCCA
CGTCATCCGCTCCGATGAGTTGTAGCTCCCGCTTTTCCAGAAGCCAAGGGTCCAAGTCCTCACC
CCGAGGACATTTTCCATAAAACAGCTGCCAAATGATTCCAAGAATACTATAACAGTCCTGATTT
TGAGAAATCAGCGCAATTTTGACGCCGAGAGATGGTGTCCTCTCTGTGTTCCTCCTGCTCGTGC
AGGTGGGCCACAGATTTCAGAAGAAACCGCCATGTATGTGGATGGAACTGCAGCCCAAGGCTCC
TTGGCTGTCCCCATCCCACCCCATCCCTCTCTGGTCCAATAACTCAAAGAAGCAAGGCGATGAC
TGTTGGCCCCTCTCACCCAAGAACAACCCACTGCTAAGATTGCATGGACATTTCCTTAGGTCGT
GCCCAGCGAGATGACGTGATGGCCATTCTCCCCACCCACAGCCCCCAGCCCCCGTGGCGCTCGG
TGTAGGCTGCTTCGGCCCACACGTATCGCAGCTGCCTTTTTCTTGACTGTGTTGTTGTCTCTTA
GATTAACTGTGCTGAGACTCCCGGTAGCTCATGGACCTGTGTCTAGTACTTTCCCGAAGCGATG
GTGGGTGTGCGTAGAGTGAAGTTGCTGTACCCACGTTGTTGAACTTGCGTACCCTGTAGCTAGA
TCGTGAGGTGTCCGTCTGTTATCCCCCCCAAGGTGGTAACTCCGTGTGTTCAATTTATGCAATG
AATGTTGTCATGCGATGCTGTAGTTTGGATTGATAAGTGGATGGTTTCTGTTTCTAAAAAGAAA
AAAAAATCAGTGTTCGCCCTTATAGGAGACATAGTCAAGTTCATGTTGATAATAACCCAGTGAA
ATTCTTCTCTTGTCAAGTTATCTGAATTGTGTAACCATAGATGGGAAGGACGCATCTTGGGAAA
CTTCAGTTTCCTACGGGAAGGAACTCCCCAAGGGCAGCCATGTGTGAAAAGATCATTTTTTAAA
GAAAAAAAAAATAAGTCAAAGAGGGCAACTTTGTACTATTCAGTTATCTAAGGAACAATAAAGA
TATTAGGAGATAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_446025	(Get FASTA)	NCBI Sequence Viewer
	XP_006233937	(Get FASTA)	NCBI Sequence Viewer
	XP_006233938	(Get FASTA)	NCBI Sequence Viewer
	XP_006233939	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC04317	(Get FASTA)	NCBI Sequence Viewer
	AAC04319	(Get FASTA)	NCBI Sequence Viewer
	AAC04320	(Get FASTA)	NCBI Sequence Viewer
	AAC04321	(Get FASTA)	NCBI Sequence Viewer
	EDL93420	(Get FASTA)	NCBI Sequence Viewer
	EDL93421	(Get FASTA)	NCBI Sequence Viewer
	EDL93422	(Get FASTA)	NCBI Sequence Viewer
	EDL93423	(Get FASTA)	NCBI Sequence Viewer
	Q62609	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_446025 ⟸ NM_053573
- Peptide Label:	precursor
- UniProtKB:	Q62609 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSVPLLKIGVVLSTMAMITNWMSQTLPSLVGLNTTRLSAASGGTLDRSTGVLPTNPEESWQVYS SAQDSEGRCICTVVAPQQTMCSRDARTKQLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQ MKGLESKFRQVEESHKQHLARQFKAIKAKMDELRPLIPVLEEYKADAKLVLQFKEEVQNLTSVL NELQEEIGAYDYDELQSRVSNLEERLRACMQKLACGKLTGISDPVTVKTSGSRFGSWMTDPLAP EGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHII IRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLWAVYATNQNAGNIVISKLDP VSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSGGTKVHYAYQTNASTYEYIDIPFQNKYSH ISMLDYNPKDRALYAWNNGHQTLYNVTLFHVIRSDEL hide sequence

RefSeq Acc Id:	XP_006233937 ⟸ XM_006233875
- Peptide Label:	isoform X1
- UniProtKB:	Q62609 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MQPARKLLSLLVLLVMGTELTQVLPTNPEESWQVYSSAQDSEGRCICTVVAPQQTMCSRDARTK QLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQMKGLESKFRQVEESHKQHLARQFKAIKA KMDELRPLIPVLEEYKADAKLVLQFKEEVQNLTSVLNELQEEIGAYDYDELQSRVSNLEERLRA CMQKLACGKLTGISDPVTVKTSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFM NTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYA WGGHSDIDLMVDENGLWAVYATNQNAGNIVISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTL YVTNGYSGGTKVHYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQTLYNVTL FHVIRSDEL hide sequence

RefSeq Acc Id:	XP_006233939 ⟸ XM_006233877
- Peptide Label:	isoform X3
- UniProtKB:	Q62609 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MQPARKLLSLLVLLVMGTELTQVLPTNPEESWQVYSSAQDSEGRCICTVVAPQQTMCSRDARTK QLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQMKGLESKFRQVEESHKQHLARQFKG hide sequence

RefSeq Acc Id:	XP_006233938 ⟸ XM_006233876
- Peptide Label:	isoform X2
- UniProtKB:	Q62609 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSVPLLKIGVVLSTMAMITNWMSQTLPSLVGLNTTRLSAASGGTLDRSTGVLPTNPEESWQVYS SAQDSEGRCICTVVAPQQTMCSRDARTKQLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQ MKGLESKFRQVEESHKQHLARQFKG hide sequence

RefSeq Acc Id:

XP_017447574 ⟸ XM_017592085

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSQSIEVLDRRTQRDLQYVEKMENQMKGLESKFRQVEESHKQHLARQFKAIKAKMDELRPLIPV
LEEYKADAKLVLQFKEEVQNLTSVLNELQEEIGAYDYDELQSRVSNLEERLRACMQKLACGKLT
GISDPVTVKTSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLP
HPWSGTGQVVYNGSIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMV
DENGLWAVYATNQNAGNIVISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSGGTK
VHYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQTLYNVTLFHVIRSDEL

hide sequence

RefSeq Acc Id:

ENSRNOP00000060981 ⟸ ENSRNOT00000065953

RefSeq Acc Id:

ENSRNOP00000013443 ⟸ ENSRNOT00000013443

Protein Domains

Olfactomedin-like

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691931

Promoter ID:

EPDNEW_R2455

Type:

initiation region

Name:

Olfm1_1

Description:

olfactomedin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	6,773,812 - 6,773,872	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	6776271	6776272	G	A	snv	ACI/N (MCW), MR/N (MCW)
3	6776291	6776292	G	A	snv	ACI/N (MCW), MR/N (MCW)
3	6780931	6780932	G	C	snv	Buf/N (MCW)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
3	7172879	7172880	G	A	snv	ACI/N (KNAW), SS/JrHsdMcwi (MCW), MR/N (KNAW)
3	7172899	7172900	G	A	snv	SS/JrHsdMcwi (MCW), MR/N (KNAW), ACI/N (KNAW)
3	7177474	7177475	A	T	snv	SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), LCR/1Mco (UMich), HCR/2Mco (UMich), GH/OmrMcwi (MCW), HCR/1Mco (UMich)
3	7193938	7193939	A	T	snv	SS/JrHsdMcwi (MCW)
3	7193941	7193942	T	C	snv	SS/JrHsdMcwi (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620320	AgrOrtholog
Ensembl Genes	ENSRNOG00000009862	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000013443	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000060981	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000013443	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000065953	UniProtKB/Swiss-Prot
InterPro	Noelin	UniProtKB/Swiss-Prot
	Noelin_dom	UniProtKB/Swiss-Prot
	Olfac-like_dom	UniProtKB/Swiss-Prot
	Quino_amine_DH_bsu	UniProtKB/Swiss-Prot
KEGG Report	rno:93667	UniProtKB/Swiss-Prot
NCBI Gene	93667	ENTREZGENE
PANTHER	PTHR23192:SF34	UniProtKB/Swiss-Prot
Pfam	Noelin-1	UniProtKB/Swiss-Prot
	OLF	UniProtKB/Swiss-Prot
PhenoGen	Olfm1	PhenoGen
PROSITE	ER_TARGET	UniProtKB/Swiss-Prot
	OLF	UniProtKB/Swiss-Prot
SMART	OLF	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50969	UniProtKB/Swiss-Prot
UniProt	NOE1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q62606	UniProtKB/Swiss-Prot
	Q62607	UniProtKB/Swiss-Prot
	Q62608	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Olfm1	olfactomedin 1		olfactomedin related ER localized protein	Name updated	1299863	APPROVED
2002-08-07	Olfm1	olfactomedin related ER localized protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_transcript	four different transcripts produced from differential promoter utilization and alternative splicing	729021

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD