Olfm1 (olfactomedin 1) - Rat Genome Database

Name: Olfm1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Olfm1 (olfactomedin 1) Rattus norvegicus

Analyze

Symbol:

Olfm1

Name:

olfactomedin 1

RGD ID:

620320

Description:

Predicted to enable amyloid-beta binding activity and identical protein binding activity. Predicted to be involved in several processes, including heart development; neuronal signal transduction; and regulation of gene expression. Predicted to act upstream of or within negative regulation of amyloid-beta formation and negative regulation of neuron migration. Predicted to be located in several cellular components, including axonal growth cone; neuronal cell body; and synaptic membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space and glutamatergic synapse. Predicted to be extrinsic component of synaptic membrane. Orthologous to human OLFM1 (olfactomedin 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

1B426B; D2Sut1e; neuronal olfactomedin-related ER localized protein; Noe1; noelin; olfactomedin related ER localized protein; olfactomedin-1; pancortin

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OLFM1 (olfactomedin 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Olfm1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Olfm1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OLFM1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OLFM1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Olfm1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OLFM1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OLFM1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Olfm1 (olfactomedin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	OLFM1 (olfactomedin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Olfm1 (olfactomedin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	olfm1b (olfactomedin 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	olfm1a (olfactomedin 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F07A5.4	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	cof-2	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6867	Alliance	DIOPT (OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-122	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	11,520,522 - 11,558,240 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	11,520,729 - 11,558,239 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	14,601,361 - 14,626,222 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	23,186,526 - 23,211,391 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	21,440,746 - 21,465,605 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	6,761,031 - 6,798,739 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	6,773,813 - 6,798,737 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	7,170,421 - 7,195,345 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	7,170,720 - 7,195,645 (+)	NCBI
Celera	3	6,324,040 - 6,348,939 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ehlers-Danlos syndrome classic type 1 (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-acetamidofluorene (ISO)

3-methylcholanthrene (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (EXP)

cadmium dichloride (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clomiphene (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

coumestrol (ISO)

dibutyl phthalate (EXP,ISO)

diethyl phthalate (EXP)

diethylstilbestrol (ISO)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

entinostat (ISO)

estrone (ISO)

ethanol (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

hexestrol (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mestranol (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP)

paraquat (EXP)

perfluorooctanoic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

phytoestrogen (ISO)

progesterone (ISO)

raloxifene (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

thioacetamide (EXP)

topotecan (EXP)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

undecane (EXP)

valproic acid (EXP,ISO)

vorinostat (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

atrioventricular valve formation (ISS)

cardiac epithelial to mesenchymal transition (ISS)

negative regulation of amyloid-beta formation (ISO)

negative regulation of gene expression (ISS)

negative regulation of neuron migration (ISO)

neuronal signal transduction (ISO,ISS)

positive regulation of apoptotic process (ISO,ISS)

positive regulation of epithelial to mesenchymal transition (ISS)

positive regulation of gene expression (ISS)

regulation of amyloid-beta formation (ISO)

regulation of axon extension (ISO,ISS)

signal transduction (IBA)

Cellular Component

AMPA glutamate receptor complex (ISO)

axon (ISO,ISS)

axonal growth cone (ISO,ISS)

endoplasmic reticulum (ISO,ISS)

extracellular space (IBA,ISO,ISS)

extrinsic component of synaptic membrane (ISO)

glutamatergic synapse (ISO)

neuronal cell body (ISO,ISS)

perikaryon (IEA)

synaptic membrane (ISO)

Molecular Function

amyloid-beta binding (ISO)

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Four structurally distinct neuron-specific olfactomedin-related glycoproteins produced by differential promoter utilization and alternative mRNA splicing from a single gene.	Danielson PE, etal., J Neurosci Res 1994 Jul 1;38(4):468-78.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15927402	PMID:16751333	PMID:22632720	PMID:22923615	PMID:22992957	PMID:25218043

Genomics

Comparative Map Data

Olfm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	11,520,522 - 11,558,240 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	11,520,729 - 11,558,239 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	14,601,361 - 14,626,222 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	23,186,526 - 23,211,391 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	21,440,746 - 21,465,605 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	6,761,031 - 6,798,739 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	6,773,813 - 6,798,737 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	7,170,421 - 7,195,345 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	7,170,720 - 7,195,645 (+)	NCBI
Celera	3	6,324,040 - 6,348,939 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

OLFM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	135,075,505 - 135,121,184 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	135,075,422 - 135,121,180 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	137,967,351 - 138,013,030 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	137,106,910 - 137,152,851 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	135,193,115 - 135,195,180	NCBI
Celera	9	108,481,187 - 108,526,613 (+)	NCBI		Celera
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	107,430,180 - 107,476,065 (+)	NCBI		HuRef
CHM1_1	9	138,116,020 - 138,161,923 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	147,297,503 - 147,344,934 (+)	NCBI		T2T-CHM13v2.0

Olfm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	28,083,105 - 28,120,748 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	28,083,004 - 28,120,748 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	28,193,093 - 28,230,736 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	28,192,992 - 28,230,736 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	28,048,613 - 28,086,256 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	28,015,102 - 28,052,745 (+)	NCBI		MGSCv36	mm8
Celera	2	27,895,841 - 27,933,529 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI

Olfm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955733	6,189 - 30,455 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955733	6,189 - 30,455 (-)	NCBI	ChiLan1.0	ChiLan1.0

OLFM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	135,205,710 - 135,252,598 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	135,205,710 - 135,252,598 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	106,206,133 - 106,253,386 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

OLFM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	50,972,035 - 50,996,770 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	50,979,146 - 50,996,602 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	50,254,990 - 50,292,647 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	51,848,892 - 51,886,555 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	50,609,021 - 50,646,646 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	50,952,656 - 50,990,375 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	51,030,732 - 51,068,419 (+)	NCBI		UU_Cfam_GSD_1.0

Olfm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	201,060,875 - 201,083,731 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	2,291,228 - 2,314,148 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936669	2,291,328 - 2,314,414 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OLFM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	274,224,454 - 274,261,328 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	274,236,241 - 274,261,322 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	308,316,240 - 308,353,274 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OLFM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	3,028,681 - 3,063,754 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666058	2,080,815 - 2,121,416 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Olfm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	2,842,340 - 2,876,958 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	2,842,177 - 2,876,966 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Olfm1
120 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	749
Count of miRNA genes:	289
Interacting mature miRNAs:	353
Transcripts:	ENSRNOT00000013443, ENSRNOT00000044951, ENSRNOT00000065953
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	10778704	50302886	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	0.0000000293	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat

Markers in Region

D78264

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	11,557,328 - 11,557,449 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	6,797,827 - 6,797,947	NCBI	Rnor6.0
Rnor_5.0	3	12,151,576 - 12,151,696	UniSTS	Rnor5.0
RGSC_v3.4	3	7,194,435 - 7,194,555	UniSTS	RGSC3.4
Celera	3	6,348,029 - 6,348,149	UniSTS
Cytogenetic Map	3	p12	UniSTS

AW742568

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	11,557,346 - 11,557,592 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	6,797,845 - 6,798,090	NCBI	Rnor6.0
Rnor_5.0	3	12,151,594 - 12,151,839	UniSTS	Rnor5.0
RGSC_v3.4	3	7,194,453 - 7,194,698	UniSTS	RGSC3.4
Celera	3	6,348,047 - 6,348,292	UniSTS
Cytogenetic Map	3	p12	UniSTS

Olfm1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	113,761,244 - 113,761,328 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	11,540,374 - 11,540,458 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	117,759,111 - 117,759,194	NCBI	Rnor6.0
Rnor_6.0	3	6,780,879 - 6,780,962	NCBI	Rnor6.0
Rnor_5.0	3	12,134,628 - 12,134,711	UniSTS	Rnor5.0
Rnor_5.0	5	121,698,058 - 121,698,141	UniSTS	Rnor5.0
Celera	5	112,322,358 - 112,322,441	UniSTS
Celera	3	6,331,101 - 6,331,184	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									74	19	15	8
Low	3	42	27	11	19	11	8	11		16	24	3	8
Below cutoff		1	30	30		30					2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U03414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U03415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U03416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U03417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000013443 ⟹ ENSRNOP00000013443

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	11,533,308 - 11,558,239 (+)	Ensembl
Rnor_6.0 Ensembl	3	6,773,813 - 6,798,737 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000065953 ⟹ ENSRNOP00000060981

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	11,533,061 - 11,542,177 (+)	Ensembl
Rnor_6.0 Ensembl	3	6,773,813 - 6,782,681 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104931 ⟹ ENSRNOP00000077356

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	11,520,729 - 11,558,239 (+)	Ensembl

RefSeq Acc Id:

NM_053573 ⟹ NP_446025

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	11,533,308 - 11,558,239 (+)	NCBI
Rnor_6.0	3	6,773,813 - 6,798,737 (+)	NCBI
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI
RGSC_v3.4	3	7,170,421 - 7,195,345 (+)	RGD
Celera	3	6,324,040 - 6,348,939 (+)	RGD

Sequence:

show sequence

AACCTGGTGGCCCTTCTCGACAGCGGAGCGCGCGGGGACGCTGCAGCGGCGGGCAACGCGGGCA
GGCAGCGCGCTCCAGGCAGGGCCGCCTGGTCACCTCCCGGCGCCGGGGCGGCGCGGCGATGGCC
AGGGCGCAGAGGGAGGCAGAGACCGGCGGGCGACGGCGGGCGGAGGGGGCGCGGGGACGCGGCC
GGGCGCCCCTGCCCGCCCTGGTGCCCGCCGCCTAAGGCTGCCCGGGGCGCGGGAGCCGGCGCCG
GCGCGGCGCGGGCGCAGGAGACCACTCGAGGCGCGATGTCGGTGCCGCTGCTGAAGATCGGGGT
CGTGCTAAGCACCATGGCCATGATCACCAACTGGATGTCCCAGACGCTGCCCTCGCTGGTGGGC
CTCAATACCACCCGGCTCTCGGCCGCCAGCGGCGGGACGCTGGACCGCAGCACCGGCGTGTTGC
CCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTAT
CTGCACGGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGG
CAGCTACTGGAGAAGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGGACTCAGA
GAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGCA
GGTGGAGGAGAGCCATAAGCAGCATCTGGCCAGGCAGTTCAAGGCAATAAAAGCGAAAATGGAT
GAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGT
TTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAAATTGGCGCCTA
TGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAA
AAACTAGCCTGCGGGAAGCTGACAGGCATAAGTGACCCGGTGACTGTCAAGACCTCAGGCTCAA
GGTTCGGGTCCTGGATGACAGACCCACTGGCCCCAGAAGGTGATAACCGGGTCTGGTACATGGA
TGGTTATCACAACAACCGCTTTGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAACACGGAT
AATTTTACCTCGCACCGTCTCCCACACCCCTGGTCGGGCACGGGCCAGGTGGTCTACAATGGCT
CCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGACGAT
CCTGAAGACGCGGAGCCTGGACTACGCTGGCTACAACAACATGTACCACTATGCCTGGGGCGGC
CACTCAGACATCGACCTCATGGTGGACGAGAACGGGCTCTGGGCCGTCTACGCCACAAACCAGA
ACGCAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAAATCCTCCAGACCTGGAA
CACCAGCTACCCCAAGCGCAGCGCCGGCGAGGCCTTCATCATCTGCGGCACCCTCTACGTCACC
AACGGTTACTCGGGGGGCACCAAGGTCCACTATGCCTACCAAACCAACGCCTCGACCTACGAGT
ACATTGACATCCCCTTCCAGAACAAATACTCTCACATCTCCATGCTGGACTACAACCCTAAAGA
CCGCGCGCTGTACGCCTGGAACAACGGCCATCAGACCCTCTACAACGTCACCCTCTTCCACGTC
ATCCGCTCCGATGAGTTGTAGCTCCCGCTTTTCCAGAAGCCAAGGGTCCAAGTCCTCACCCCGA
GGACATTTTCCATAAAACAGCTGCCAAATGATTCCAAGAATACTATAACAGTCCTGATTTTGAG
AAATCAGCGCAATTTTGACGCCGAGAGATGGTGTCCTCTCTGTGTTCCTCCTGCTCGTGCAGGT
GGGCCACAGATTTCAGAAGAAACCGCCATGTATGTGGATGGAACTGCAGCCCAAGGCTCCTTGG
CTGTCCCCATCCCACCCCATCCCTCTCTGGTCCAATAACTCAAAGAAGCAAGGCGATGACTGTT
GGCCCCTCTCACCCAAGAACAACCCACTGCTAAGATTGCATGGACATTTCCTTAGGTCGTGCCC
AGCGAGATGACGTGATGGCCATTCTCCCCACCCACAGCCCCCAGCCCCCGTGGCGCTCGGTGTA
GGCTGCTTCGGCCCACACGTATCGCAGCTGCCTTTTTCTTGACTGTGTTGTTGTCTCTTAGATT
AACTGTGCTGAGACTCCCGGTAGCTCATGGACCTGTGTCTAGTACTTTCCCGAAGCGATGGTGG
GTGTGCGTAGAGTGAAGTTGCTGTACCCACGTTGTTGAACTTGCGTACCCTGTAGCTAGATCGT
GAGGTGTCCGTCTGTTATCCCCCCCAAGGTGGTAACTCCGTGTGTTCAATTTATGCAATGAATG
TTGTCATGCGATGCTGTAGTTTGGATTGATAAGTGGATGGTTTCTGTTTCTAAAAAGAAAAAAA
AATCAGTGTTCGCCCTTATAGGAGACATAGTCAAGTTCATGTTGATAATAACCCAGTGAAATTC
TTCTCTTGTCAAGTTATCTGAATTGTGTAACCATAGATGGGAAGGACGCATCTTGGGAAACTTC
AGTTTCCTACGGGAAGGAACTCCCCAAGGGCAGCCATGTGTGAAAAGATCATTTTTTAAAGAAA
AAAAAAATAAGTCAAAGAGGGCAACTTTGTACTATTCAGTTATCTAAGGAACAATAAAGATATT
AGGAGAT

hide sequence

RefSeq Acc Id:

XM_006233875 ⟹ XP_006233937

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	11,520,522 - 11,558,240 (+)	NCBI
Rnor_6.0	3	6,761,031 - 6,798,739 (+)	NCBI
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI

Sequence:

show sequence

CCTCCTCCCTTCTCCGCGCAAGCAAGGCTCACGGGTCCCTCAGCGCCACCCCCGCCCGCGCCCC
TCACCGAGCAAACTTTTGGCATCGCTGCAGCCCGGGCGCGCCGCCGAGCTCCGCAGGGCGCGCC
TCTCCGCTGAGCCTGGGCGCGCGGGGACCCGCGTGGCGCGCAGGGAAAGCAAGCGCAGCCCCCG
CCCCGCCAGCCCAGCCCTGCCCGAGAGGCAGTCGCGCCGGAACCGGTACCATAAATATGCAGAG
CGGAGGCTCAGCGCAGCAGAGCCCGCGCGCCGCCCGCCCCGGCTGCTAAGCAGGCGCCGCCGGA
GCCCGAGCCGCGGCCGGAGCCCCAGCCCCAACCACAGCCGGGAGCGCGTCCACGTCCCCGCAGC
CGCCGACCGCCAGCACCCAGGCCCTGCACGCTAGGACGTCGGAGTGGCCGCGAGACATGCAACC
GGCCCGGAAGCTCCTCAGCCTCCTGGTCCTCCTGGTGATGGGCACCGAACTCACCCAAGTGTTG
CCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTA
TCTGCACGGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAG
GCAGCTACTGGAGAAGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGGACTCAG
AGAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGC
AGGTGGAGGAGAGCCATAAGCAGCATCTGGCCAGGCAGTTCAAGGCAATAAAAGCGAAAATGGA
TGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAG
TTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAAATTGGCGCCT
ATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCA
AAAACTAGCCTGCGGGAAGCTGACAGGCATAAGTGACCCGGTGACTGTCAAGACCTCAGGCTCA
AGGTTCGGGTCCTGGATGACAGACCCACTGGCCCCAGAAGGTGATAACCGGGTCTGGTACATGG
ATGGTTATCACAACAACCGCTTTGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAACACGGA
TAATTTTACCTCGCACCGTCTCCCACACCCCTGGTCGGGCACGGGCCAGGTGGTCTACAATGGC
TCCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGACGA
TCCTGAAGACGCGGAGCCTGGACTACGCTGGCTACAACAACATGTACCACTATGCCTGGGGCGG
CCACTCAGACATCGACCTCATGGTGGACGAGAACGGGCTCTGGGCCGTCTACGCCACAAACCAG
AACGCAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAAATCCTCCAGACCTGGA
ACACCAGCTACCCCAAGCGCAGCGCCGGCGAGGCCTTCATCATCTGCGGCACCCTCTACGTCAC
CAACGGTTACTCGGGGGGCACCAAGGTCCACTATGCCTACCAAACCAACGCCTCGACCTACGAG
TACATTGACATCCCCTTCCAGAACAAATACTCTCACATCTCCATGCTGGACTACAACCCTAAAG
ACCGCGCGCTGTACGCCTGGAACAACGGCCATCAGACCCTCTACAACGTCACCCTCTTCCACGT
CATCCGCTCCGATGAGTTGTAGCTCCCGCTTTTCCAGAAGCCAAGGGTCCAAGTCCTCACCCCG
AGGACATTTTCCATAAAACAGCTGCCAAATGATTCCAAGAATACTATAACAGTCCTGATTTTGA
GAAATCAGCGCAATTTTGACGCCGAGAGATGGTGTCCTCTCTGTGTTCCTCCTGCTCGTGCAGG
TGGGCCACAGATTTCAGAAGAAACCGCCATGTATGTGGATGGAACTGCAGCCCAAGGCTCCTTG
GCTGTCCCCATCCCACCCCATCCCTCTCTGGTCCAATAACTCAAAGAAGCAAGGCGATGACTGT
TGGCCCCTCTCACCCAAGAACAACCCACTGCTAAGATTGCATGGACATTTCCTTAGGTCGTGCC
CAGCGAGATGACGTGATGGCCATTCTCCCCACCCACAGCCCCCAGCCCCCGTGGCGCTCGGTGT
AGGCTGCTTCGGCCCACACGTATCGCAGCTGCCTTTTTCTTGACTGTGTTGTTGTCTCTTAGAT
TAACTGTGCTGAGACTCCCGGTAGCTCATGGACCTGTGTCTAGTACTTTCCCGAAGCGATGGTG
GGTGTGCGTAGAGTGAAGTTGCTGTACCCACGTTGTTGAACTTGCGTACCCTGTAGCTAGATCG
TGAGGTGTCCGTCTGTTATCCCCCCCAAGGTGGTAACTCCGTGTGTTCAATTTATGCAATGAAT
GTTGTCATGCGATGCTGTAGTTTGGATTGATAAGTGGATGGTTTCTGTTTCTAAAAAGAAAAAA
AAATCAGTGTTCGCCCTTATAGGAGACATAGTCAAGTTCATGTTGATAATAACCCAGTGAAATT
CTTCTCTTGTCAAGTTATCTGAATTGTGTAACCATAGATGGGAAGGACGCATCTTGGGAAACTT
CAGTTTCCTACGGGAAGGAACTCCCCAAGGGCAGCCATGTGTGAAAAGATCATTTTTTAAAGAA
AAAAAAAATAAGTCAAAGAGGGCAACTTTGTACTATTCAGTTATCTAAGGAACAATAAAGATAT
TAGGAGATAT

hide sequence

RefSeq Acc Id:

XM_006233876 ⟹ XP_006233938

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	11,533,288 - 11,542,182 (+)	NCBI
Rnor_6.0	3	6,773,777 - 6,782,686 (+)	NCBI
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI

Sequence:

show sequence

GCCGCGGCCCCCGCGCACATCCCGCGCCGTGCTCAGAACCTGGTGGCCCTTCTCGACAGCGGAG
CGCGCGGGGACGCTGCAGCGGCGGGCAACGCGGGCAGGCAGCGCGCTCCAGGCAGGGCCGCCTG
GTCACCTCCCGGCGCCGGGGCGGCGCGGCGATGGCCAGGGCGCAGAGGGAGGCAGAGACGGGCG
GGCGGCGGCGGGCGGAGGGGGCGCGGGGACGCGGCCGGGCGCCCCTGCCCGCCCTGGTGCCCGC
CGCCTAAGGCTGCCCGGGGCGCGGGAGCCGGCGCCGGCGCGGCGCGGGCGCAGGAGACCACTCG
AGGCGCGATGTCGGTGCCGCTGCTGAAGATCGGGGTCGTGCTAAGCACCATGGCCATGATCACC
AACTGGATGTCCCAGACGCTGCCCTCGCTGGTGGGCCTCAATACCACCCGGCTCTCGGCCGCCA
GCGGCGGGACGCTGGACCGCAGCACCGGCGTGTTGCCCACCAACCCCGAGGAGAGCTGGCAGGT
GTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTATCTGCACGGTGGTCGCCCCCCAGCAGACC
ATGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTGGAGAAGGTGCAAAACATGT
CTCAATCCATAGAAGTCTTGGACAGGCGGACTCAGAGAGACCTGCAGTACGTGGAGAAGATGGA
GAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGCAGGTGGAGGAGAGCCATAAGCAGCATCTG
GCCAGGCAGTTCAAGGGCTAACTTAAAGAGTTTTTTCAATGCGCCAGTGACTGAAGAAGCAGTC
CCCCCATGTAACCATGAGAGAGCCAGAGAGCTTTTTGCACCATGCATTTTTATGATTCTTTTCC
AATCCTTAGCGCCATTTCACTAAGGAACCTTGAATCCAGCCAGGATCCTCCTTTTGCATGCGAC
TCTAGATGCATCCCATGAATAGTTTGAACCCTTCCTTGTCAATGCACTTTTTGAAAGAGAAAGA
AAAAAAAACCCACAAACTTTGTGTATGTGACCTAAAGCATGTAACTTTAAGATGCTGCATTCTC
AACTGACTAATAAAGGCCTTTCCCAAATA

hide sequence

RefSeq Acc Id:

XM_006233877 ⟹ XP_006233939

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	11,520,528 - 11,542,182 (+)	NCBI
Rnor_6.0	3	6,761,031 - 6,782,686 (+)	NCBI
Rnor_5.0	3	12,114,825 - 12,152,487 (+)	NCBI

Sequence:

show sequence

CCTCCTCCCTTCTCCGCGCAAGCAAGGCTCACGGGTCCCTCAGCGCCACCCCCGCCCGCGCCCC
TCACCGAGCAAACTTTTGGCATCGCTGCAGCCCGGGCGCGCCGCCGAGCTCCGCAGGGCGCGCC
TCTCCGCTGAGCCTGGGCGCGCGGGGACCCGCGTGGCGCGCAGGGAAAGCAAGCGCAGCCCCCG
CCCCGCCAGCCCAGCCCTGCCCGAGAGGCAGTCGCGCCGGAACCGGTACCATAAATATGCAGAG
CGGAGGCTCAGCGCAGCAGAGCCCGCGCGCCGCCCGCCCCGGCTGCTAAGCAGGCGCCGCCGGA
GCCCGAGCCGCGGCCGGAGCCCCAGCCCCAACCACAGCCGGGAGCGCGTCCACGTCCCCGCAGC
CGCCGACCGCCAGCACCCAGGCCCTGCACGCTAGGACGTCGGAGTGGCCGCGAGACATGCAACC
GGCCCGGAAGCTCCTCAGCCTCCTGGTCCTCCTGGTGATGGGCACCGAACTCACCCAAGTGTTG
CCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTA
TCTGCACGGTGGTCGCCCCCCAGCAGACCATGTGTTCACGGGATGCCCGCACAAAACAGCTGAG
GCAGCTACTGGAGAAGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGGACTCAG
AGAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGTCCAAGTTCAGGC
AGGTGGAGGAGAGCCATAAGCAGCATCTGGCCAGGCAGTTCAAGGGCTAACTTAAAGAGTTTTT
TCAATGCGCCAGTGACTGAAGAAGCAGTCCCCCCATGTAACCATGAGAGAGCCAGAGAGCTTTT
TGCACCATGCATTTTTATGATTCTTTTCCAATCCTTAGCGCCATTTCACTAAGGAACCTTGAAT
CCAGCCAGGATCCTCCTTTTGCATGCGACTCTAGATGCATCCCATGAATAGTTTGAACCCTTCC
TTGTCAATGCACTTTTTGAAAGAGAAAGAAAAAAAAACCCACAAACTTTGTGTATGTGACCTAA
AGCATGTAACTTTAAGATGCTGCATTCTCAACTGACTAATAAAGGCCTTTCCCAAATA

hide sequence

Protein Sequences


Protein RefSeqs	NP_446025	(Get FASTA)	NCBI Sequence Viewer
	XP_006233937	(Get FASTA)	NCBI Sequence Viewer
	XP_006233938	(Get FASTA)	NCBI Sequence Viewer
	XP_006233939	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC04317	(Get FASTA)	NCBI Sequence Viewer
	AAC04319	(Get FASTA)	NCBI Sequence Viewer
	AAC04320	(Get FASTA)	NCBI Sequence Viewer
	AAC04321	(Get FASTA)	NCBI Sequence Viewer
	EDL93420	(Get FASTA)	NCBI Sequence Viewer
	EDL93421	(Get FASTA)	NCBI Sequence Viewer
	EDL93422	(Get FASTA)	NCBI Sequence Viewer
	EDL93423	(Get FASTA)	NCBI Sequence Viewer
	Q62609	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_446025 ⟸ NM_053573
- Peptide Label:	precursor
- UniProtKB:	Q62608 (UniProtKB/Swiss-Prot), Q62609 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSVPLLKIGVVLSTMAMITNWMSQTLPSLVGLNTTRLSAASGGTLDRSTGVLPTNPEESWQVYS SAQDSEGRCICTVVAPQQTMCSRDARTKQLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQ MKGLESKFRQVEESHKQHLARQFKAIKAKMDELRPLIPVLEEYKADAKLVLQFKEEVQNLTSVL NELQEEIGAYDYDELQSRVSNLEERLRACMQKLACGKLTGISDPVTVKTSGSRFGSWMTDPLAP EGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHII IRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLWAVYATNQNAGNIVISKLDP VSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSGGTKVHYAYQTNASTYEYIDIPFQNKYSH ISMLDYNPKDRALYAWNNGHQTLYNVTLFHVIRSDEL hide sequence

RefSeq Acc Id:	XP_006233937 ⟸ XM_006233875
- Peptide Label:	isoform X1
- UniProtKB:	Q62609 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MQPARKLLSLLVLLVMGTELTQVLPTNPEESWQVYSSAQDSEGRCICTVVAPQQTMCSRDARTK QLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQMKGLESKFRQVEESHKQHLARQFKAIKA KMDELRPLIPVLEEYKADAKLVLQFKEEVQNLTSVLNELQEEIGAYDYDELQSRVSNLEERLRA CMQKLACGKLTGISDPVTVKTSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFM NTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYA WGGHSDIDLMVDENGLWAVYATNQNAGNIVISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTL YVTNGYSGGTKVHYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQTLYNVTL FHVIRSDEL hide sequence

RefSeq Acc Id:	XP_006233939 ⟸ XM_006233877
- Peptide Label:	isoform X3
- UniProtKB:	Q62609 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MQPARKLLSLLVLLVMGTELTQVLPTNPEESWQVYSSAQDSEGRCICTVVAPQQTMCSRDARTK QLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQMKGLESKFRQVEESHKQHLARQFKG hide sequence

RefSeq Acc Id:	XP_006233938 ⟸ XM_006233876
- Peptide Label:	isoform X2
- UniProtKB:	Q62609 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSVPLLKIGVVLSTMAMITNWMSQTLPSLVGLNTTRLSAASGGTLDRSTGVLPTNPEESWQVYS SAQDSEGRCICTVVAPQQTMCSRDARTKQLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQ MKGLESKFRQVEESHKQHLARQFKG hide sequence

RefSeq Acc Id:

ENSRNOP00000060981 ⟸ ENSRNOT00000065953

RefSeq Acc Id:

ENSRNOP00000013443 ⟸ ENSRNOT00000013443

RefSeq Acc Id:

ENSRNOP00000077356 ⟸ ENSRNOT00000104931

Protein Domains

Noelin-1 Olfactomedin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62609-F1-model_v2	AlphaFold	Q62609	1-485	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691931

Promoter ID:

EPDNEW_R2455

Type:

initiation region

Name:

Olfm1_1

Description:

olfactomedin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	6,773,812 - 6,773,872	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620320	AgrOrtholog
BioCyc Gene	G2FUF-50285	BioCyc
Ensembl Genes	ENSRNOG00000009862	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000013443	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000060981.2	UniProtKB/TrEMBL
	ENSRNOP00000077356	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000013443	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000065953.3	UniProtKB/TrEMBL
	ENSRNOT00000104931	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	Noelin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Noelin_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Olfac-like_dom	UniProtKB/Swiss-Prot
	Quino_amine_DH_bsu	UniProtKB/Swiss-Prot
KEGG Report	rno:93667	UniProtKB/Swiss-Prot
NCBI Gene	93667	ENTREZGENE
PANTHER	PTHR23192:SF34	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Noelin-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	OLF	UniProtKB/Swiss-Prot
PhenoGen	Olfm1	PhenoGen
PROSITE	ER_TARGET	UniProtKB/Swiss-Prot
	OLF	UniProtKB/Swiss-Prot
SMART	OLF	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50969	UniProtKB/Swiss-Prot
UniProt	A0A8L2QVC3_RAT	UniProtKB/TrEMBL
	NOE1_RAT	UniProtKB/Swiss-Prot
	Q62608	ENTREZGENE
	Q62609	ENTREZGENE
UniProt Secondary	Q62606	UniProtKB/Swiss-Prot
	Q62607	UniProtKB/Swiss-Prot
	Q62608	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Olfm1	olfactomedin 1		olfactomedin related ER localized protein	Name updated	1299863	APPROVED
2002-08-07	Olfm1	olfactomedin related ER localized protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_transcript	four different transcripts produced from differential promoter utilization and alternative splicing	729021

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD