Surf1 (SURF1, cytochrome c oxidase assembly factor) - Rat Genome Database

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Gene: Surf1 (SURF1, cytochrome c oxidase assembly factor) Rattus norvegicus
Analyze
Symbol: Surf1
Name: SURF1, cytochrome c oxidase assembly factor
RGD ID: 620527
Description: Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4K; Leigh disease; and cytochrome-c oxidase deficiency disease. Orthologous to human SURF1 (SURF1 cytochrome c oxidase assembly factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ab1-205; LOC100912008; surfeit 1; surfeit locus protein 1; uncharacterized LOC100912008
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2310,241,793 - 10,244,686 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl310,241,837 - 10,263,315 (-)Ensembl
Rnor_6.035,461,717 - 5,464,560 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,869,795 - 4,872,632 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0310,823,627 - 10,826,484 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,810,638 - 5,813,475 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.135,810,937 - 5,813,775 (-)NCBI
Celera35,039,828 - 5,042,665 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12566387   PMID:20888800   PMID:23838831   PMID:24027061  


Genomics

Comparative Map Data
Surf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2310,241,793 - 10,244,686 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl310,241,837 - 10,263,315 (-)Ensembl
Rnor_6.035,461,717 - 5,464,560 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,869,795 - 4,872,632 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0310,823,627 - 10,826,484 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,810,638 - 5,813,475 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.135,810,937 - 5,813,775 (-)NCBI
Celera35,039,828 - 5,042,665 (-)NCBICelera
Cytogenetic Map3p13NCBI
SURF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,351,758 - 133,356,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9133,351,758 - 133,356,676 (-)EnsemblGRCh38hg38GRCh38
GRCh379136,218,613 - 136,223,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,208,487 - 135,213,182 (-)NCBINCBI36hg18NCBI36
Build 349133,248,219 - 133,252,915NCBI
Celera9106,769,152 - 106,773,840 (-)NCBI
Cytogenetic Map9q34.2NCBI
HuRef9105,718,581 - 105,723,261 (-)NCBIHuRef
CHM1_19136,368,824 - 136,373,504 (-)NCBICHM1_1
T2T-CHM13v2.09145,565,698 - 145,570,441 (-)NCBI
Surf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,803,390 - 26,806,667 (-)NCBIGRCm39mm39
GRCm39 Ensembl226,803,393 - 26,806,542 (-)Ensembl
GRCm38226,913,378 - 26,916,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,913,381 - 26,916,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,768,898 - 26,772,050 (-)NCBIGRCm37mm9NCBIm37
MGSCv36226,735,445 - 26,738,340 (-)NCBImm8
Celera226,623,123 - 26,626,275 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.1NCBI
Surf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,707,951 - 2,711,566 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,707,877 - 2,711,606 (-)NCBIChiLan1.0ChiLan1.0
LOC100983451
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19133,085,739 - 133,088,911 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,085,739 - 133,088,904 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09104,475,018 - 104,479,714 (-)NCBIMhudiblu_PPA_v0panPan3
SURF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,786,562 - 49,790,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,786,085 - 49,790,148 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,066,928 - 49,071,492 (-)NCBI
ROS_Cfam_1.0950,659,471 - 50,664,036 (-)NCBI
ROS_Cfam_1.0 Ensembl950,660,593 - 50,664,180 (-)Ensembl
UMICH_Zoey_3.1949,421,907 - 49,426,471 (-)NCBI
UNSW_CanFamBas_1.0949,763,390 - 49,767,971 (-)NCBI
UU_Cfam_GSD_1.0949,841,389 - 49,845,964 (-)NCBI
LOC101971854
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,842,971 - 199,847,440 (-)NCBI
SpeTri2.0NW_0049366693,527,741 - 3,532,087 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SURF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,965,637 - 272,970,510 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11272,965,637 - 272,970,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103239687
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,780,415 - 4,785,538 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl124,780,568 - 4,785,385 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666058203,090 - 208,286 (-)NCBIVero_WHO_p1.0
LOC101710326
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,815,224 - 1,818,991 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247601,815,215 - 1,819,014 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH141176  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,241,887 - 10,242,320 (+)MAPPERmRatBN7.2
Rnor_6.035,461,812 - 5,462,244NCBIRnor6.0
Rnor_6.034,869,885 - 4,870,317NCBIRnor6.0
Rnor_5.0310,823,722 - 10,824,154UniSTSRnor5.0
Rnor_5.0310,225,082 - 10,225,514UniSTSRnor5.0
RGSC_v3.435,810,728 - 5,811,160UniSTSRGSC3.4
Celera35,039,918 - 5,040,350UniSTS
RH 3.4 Map321.9UniSTS
Cytogenetic Map3p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:130
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000061242, ENSRNOT00000071754
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 43 57 41 19 41 8 11 74 35 40 11 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_172068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF182952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000061242   ⟹   ENSRNOP00000057954
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,241,837 - 10,263,315 (-)Ensembl
Rnor_6.0 Ensembl34,869,795 - 4,872,632 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118510   ⟹   ENSRNOP00000092828
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,241,842 - 10,263,315 (-)Ensembl
RefSeq Acc Id: NM_172068   ⟹   NP_742065
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,241,798 - 10,244,635 (-)NCBI
Rnor_6.035,461,722 - 5,464,559 (-)NCBI
Rnor_5.0310,823,627 - 10,826,484 (-)NCBI
RGSC_v3.435,810,638 - 5,813,475 (-)RGD
Celera35,039,828 - 5,042,665 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233726   ⟹   XP_006233788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,241,793 - 10,244,635 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233727   ⟹   XP_006233789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,241,793 - 10,244,668 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592099   ⟹   XP_017447588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,241,793 - 10,244,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592100   ⟹   XP_017447589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,241,793 - 10,244,680 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592101   ⟹   XP_017447590
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,241,793 - 10,243,849 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105787   ⟹   XP_038961715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,241,793 - 10,244,631 (-)NCBI
RefSeq Acc Id: XM_039105788   ⟹   XP_038961716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,241,793 - 10,244,631 (-)NCBI
RefSeq Acc Id: XM_039105789   ⟹   XP_038961717
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,243,020 - 10,244,680 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_742065   ⟸   NM_172068
- UniProtKB: Q9QXU2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000057954   ⟸   ENSRNOT00000061242
RefSeq Acc Id: XP_017447588   ⟸   XM_017592099
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447589   ⟸   XM_017592100
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006233789   ⟸   XM_006233727
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006233788   ⟸   XM_006233726
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038961716   ⟸   XM_039105788
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038961715   ⟸   XM_039105787
- Peptide Label: isoform X3
RefSeq Acc Id: XP_017447590   ⟸   XM_017592101
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_038961717   ⟸   XM_039105789
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000092828   ⟸   ENSRNOT00000118510

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXU2-F1-model_v2 AlphaFold Q9QXU2 1-306 view protein structure
AF-Q7TP91-F1-model_v2 AlphaFold Q7TP91 1-733 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620527 AgrOrtholog
BioCyc Gene G2FUF-50320 BioCyc
Ensembl Genes ENSRNOG00000005247 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000060005 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000057954 UniProtKB/Swiss-Prot
  ENSRNOP00000065447 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061242 UniProtKB/Swiss-Prot
  ENSRNOT00000071754 ENTREZGENE, UniProtKB/TrEMBL
InterPro Surf1/Shy1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Surf1/Surf4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Surf4 UniProtKB/TrEMBL
KEGG Report rno:64463 UniProtKB/Swiss-Prot
NCBI Gene 64463 ENTREZGENE
PANTHER PTHR23427 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SURF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SURF4 UniProtKB/TrEMBL
PhenoGen Surf1 PhenoGen
PROSITE SURF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SURF4 UniProtKB/TrEMBL
UniProt Q7TP91_RAT UniProtKB/TrEMBL
  Q9QXU2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary M0R7L5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Surf1  SURF1, cytochrome c oxidase assembly factor  LOC100912008  uncharacterized LOC100912008  Data Merged 737654 PROVISIONAL
2018-04-19 Surf1  SURF1, cytochrome c oxidase assembly factor  Surf1  surfeit 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912008  uncharacterized LOC100912008      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-12-14 Surf1  surfeit 1    Surfeit 1  Name updated 1299863 APPROVED
2002-08-07 Surf1  Surfeit 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_disease human homolog is mutated in patients with Leigh syndrome associated with cytochrome c oxidase deficiency 634132