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Gene: Sohlh1 (spermatogenesis and oogenesis specific basic helix-loop-helix 1) Rattus norvegicus
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Symbol: Sohlh1
Name: spermatogenesis and oogenesis specific basic helix-loop-helix 1
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II regulatory region sequence-specific DNA binding activity; and protein dimerization activity. Predicted to be involved in gamete generation; ovarian follicle development; and positive regulation of transcription by RNA polymerase II. Predicted to localize to the cytoplasm and nucleus. Human ortholog(s) of this gene implicated in male infertility and ovarian dysgenesis 5. Orthologous to human SOHLH1 (spermatogenesis and oogenesis specific basic helix-loop-helix 1); INTERACTS WITH bisphenol A; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); all-trans-retinoic acid (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC362085; RGD1564440; similar to helix-loop-helix protein NOHLH; spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.033,290,766 - 3,295,226 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,291,084 - 3,295,101 (-)Ensembl
Rnor_5.038,653,008 - 8,657,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,015,651 - 4,019,668 (-)NCBIRGSC3.4rn4RGSC3.4
Celera33,486,441 - 3,490,458 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Sohlh1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564440
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.