Fnbp1 (formin binding protein 1) - Rat Genome Database

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Gene: Fnbp1 (formin binding protein 1) Rattus norvegicus
Analyze
Symbol: Fnbp1
Name: formin binding protein 1
RGD ID: 621350
Description: Predicted to enable identical protein binding activity. Involved in nervous system development. Predicted to be located in intracellular membrane-bounded organelle and plasma membrane. Orthologous to human FNBP1 (formin binding protein 1); INTERACTS WITH 1,3-dinitrobenzene; 4-amino-2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: formin-binding protein 1; formin-binding protein 1-like; formin-binding protein 17; LOC102555088; LOC108348147; rapostlin; Rnd2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2314,316,011 - 14,386,704 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl314,309,640 - 14,424,881 (-)Ensembl
Rnor_6.039,865,657 - 9,936,333 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,861,237 - 9,936,405 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0315,224,331 - 15,295,695 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4310,091,465 - 10,162,829 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1310,014,013 - 10,097,567 (-)NCBI
Celera39,073,525 - 9,143,521 (-)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
fipronil  (EXP)
folic acid  (ISO)
gallic acid  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
levonorgestrel  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
Methylazoxymethanol acetate  (EXP)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel dichloride  (ISO)
nitrofen  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
phenylmercury acetate  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone undecanoate  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:14502124   PMID:15057822   PMID:15252009   PMID:16303198   PMID:17512409   PMID:21768103   PMID:25931508  


Genomics

Comparative Map Data
Fnbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2314,316,011 - 14,386,704 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl314,309,640 - 14,424,881 (-)Ensembl
Rnor_6.039,865,657 - 9,936,333 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,861,237 - 9,936,405 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0315,224,331 - 15,295,695 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4310,091,465 - 10,162,829 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1310,014,013 - 10,097,567 (-)NCBI
Celera39,073,525 - 9,143,521 (-)NCBICelera
Cytogenetic Map3p12NCBI
FNBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389129,887,187 - 130,053,879 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9129,887,187 - 130,043,194 (-)EnsemblGRCh38hg38GRCh38
GRCh379132,649,466 - 132,805,468 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369131,689,287 - 131,845,294 (-)NCBINCBI36hg18NCBI36
Build 349129,729,019 - 129,884,981NCBI
Celera9103,300,574 - 103,456,565 (-)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9102,248,422 - 102,404,813 (-)NCBIHuRef
CHM1_19132,798,466 - 132,954,640 (-)NCBICHM1_1
Fnbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,916,218 - 31,032,046 (-)NCBIGRCm39mm39
GRCm39 Ensembl230,916,218 - 31,032,020 (-)Ensembl
GRCm38231,026,206 - 31,145,454 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,026,206 - 31,142,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,881,726 - 30,997,528 (-)NCBIGRCm37mm9NCBIm37
MGSCv36230,848,215 - 30,964,015 (-)NCBImm8
Celera230,732,020 - 30,848,624 (-)NCBICelera
Cytogenetic Map2BNCBI
Fnbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495551385,038 - 137,705 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495551386,004 - 137,631 (-)NCBIChiLan1.0ChiLan1.0
FNBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19129,671,784 - 129,777,418 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9129,675,132 - 129,780,989 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09101,014,402 - 101,171,302 (-)NCBIMhudiblu_PPA_v0panPan3
FNBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1953,809,865 - 53,962,685 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl953,812,632 - 53,959,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,007,089 - 53,159,541 (+)NCBI
ROS_Cfam_1.0954,709,036 - 54,860,240 (+)NCBI
ROS_Cfam_1.0 Ensembl954,719,822 - 54,860,240 (+)Ensembl
UMICH_Zoey_3.1953,485,081 - 53,637,532 (+)NCBI
UNSW_CanFamBas_1.0953,807,098 - 53,959,600 (+)NCBI
UU_Cfam_GSD_1.0953,899,997 - 54,052,638 (+)NCBI
Fnbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,310,126 - 197,423,315 (-)NCBI
SpeTri2.0NW_00493648717,078,653 - 17,142,293 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1270,042,369 - 270,180,188 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11270,042,367 - 270,180,212 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,952,054 - 304,034,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FNBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1128,098,109 - 8,251,543 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl128,098,092 - 8,249,182 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660797,190,770 - 7,350,108 (-)NCBIVero_WHO_p1.0
Fnbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247605,479,154 - 5,563,903 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
BF399073  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2314,337,457 - 14,337,618 (+)MAPPERmRatBN7.2
Rnor_6.039,887,100 - 9,887,260NCBIRnor6.0
Rnor_5.0315,245,774 - 15,245,934UniSTSRnor5.0
RGSC_v3.4310,112,908 - 10,113,068UniSTSRGSC3.4
Celera39,094,967 - 9,095,127UniSTS
RH 3.4 Map337.9UniSTS
Cytogenetic Map3p12UniSTS
RH142088  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2314,325,150 - 14,325,352 (+)MAPPERmRatBN7.2
Rnor_6.039,874,795 - 9,874,996NCBIRnor6.0
Rnor_5.0315,233,469 - 15,233,670UniSTSRnor5.0
RGSC_v3.4310,100,603 - 10,100,804UniSTSRGSC3.4
Celera39,082,663 - 9,082,864UniSTS
RH 3.4 Map350.1UniSTS
Cytogenetic Map3p12UniSTS
BE105446  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2314,315,673 - 14,315,863 (+)MAPPERmRatBN7.2
Rnor_6.039,865,320 - 9,865,509NCBIRnor6.0
Rnor_5.0315,223,994 - 15,224,183UniSTSRnor5.0
RGSC_v3.4310,091,128 - 10,091,317UniSTSRGSC3.4
Celera39,073,188 - 9,073,377UniSTS
RH 3.4 Map345.6UniSTS
Cytogenetic Map3p12UniSTS
AU048475  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2314,327,968 - 14,328,102 (+)MAPPERmRatBN7.2
Rnor_6.039,877,613 - 9,877,746NCBIRnor6.0
Rnor_5.0315,236,287 - 15,236,420UniSTSRnor5.0
RGSC_v3.4310,103,421 - 10,103,554UniSTSRGSC3.4
Celera39,085,481 - 9,085,612UniSTS
Cytogenetic Map3p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:487
Count of miRNA genes:110
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000011224, ENSRNOT00000036251, ENSRNOT00000042798, ENSRNOT00000048428, ENSRNOT00000060562
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 24 13 19 13 73 30 36 11
Low 8 33 28 28 8 11 1 5 5 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001393677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB073208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000011224   ⟹   ENSRNOP00000011224
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,315,633 - 14,387,311 (-)Ensembl
Rnor_6.0 Ensembl39,865,657 - 9,936,352 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000042798   ⟹   ENSRNOP00000049838
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,315,633 - 14,386,819 (-)Ensembl
Rnor_6.0 Ensembl39,861,237 - 9,936,405 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096687   ⟹   ENSRNOP00000091155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,309,640 - 14,424,881 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106082   ⟹   ENSRNOP00000088096
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,309,640 - 14,424,881 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110957   ⟹   ENSRNOP00000092158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,309,640 - 14,424,881 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113314   ⟹   ENSRNOP00000089940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,309,640 - 14,424,881 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119171   ⟹   ENSRNOP00000077955
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,309,640 - 14,424,881 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119242   ⟹   ENSRNOP00000082158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl314,309,640 - 14,424,881 (-)Ensembl
RefSeq Acc Id: NM_138914   ⟹   NP_620269
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2314,316,011 - 14,386,704 (-)NCBI
Rnor_6.039,865,657 - 9,936,333 (-)NCBI
Rnor_5.0315,224,331 - 15,295,695 (-)NCBI
RGSC_v3.4310,091,465 - 10,162,829 (-)RGD
Celera39,073,525 - 9,143,521 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_620269   ⟸   NM_138914
- UniProtKB: Q8R511 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011224   ⟸   ENSRNOT00000011224
RefSeq Acc Id: ENSRNOP00000049838   ⟸   ENSRNOT00000042798
RefSeq Acc Id: ENSRNOP00000077955   ⟸   ENSRNOT00000119171
RefSeq Acc Id: ENSRNOP00000088096   ⟸   ENSRNOT00000106082
RefSeq Acc Id: ENSRNOP00000092158   ⟸   ENSRNOT00000110957
RefSeq Acc Id: ENSRNOP00000082158   ⟸   ENSRNOT00000119242
RefSeq Acc Id: ENSRNOP00000091155   ⟸   ENSRNOT00000096687
RefSeq Acc Id: ENSRNOP00000089940   ⟸   ENSRNOT00000113314
Protein Domains
F-BAR   REM-1   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R511-F1-model_v2 AlphaFold Q8R511 1-616 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621350 AgrOrtholog
BioCyc Gene G2FUF-50184 BioCyc
Ensembl Genes ENSRNOG00000008258 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000011224 UniProtKB/TrEMBL
  ENSRNOP00000049838 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011224 UniProtKB/TrEMBL
  ENSRNOT00000042798 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FNBP1/FBP17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FNBP1_F-BAR UniProtKB/Swiss-Prot
  FNBP1_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HR1_rho-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:192348 UniProtKB/Swiss-Prot
NCBI Gene 192348 ENTREZGENE
PANTHER PTHR15735:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fnbp1 PhenoGen
PROSITE F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F1LZF2_RAT UniProtKB/TrEMBL
  FNBP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Z4YNH5_RAT UniProtKB/TrEMBL
UniProt Secondary Q75UE2 UniProtKB/Swiss-Prot
  Q75UE3 UniProtKB/Swiss-Prot
  Q75UE4 UniProtKB/Swiss-Prot
  Q75UE5 UniProtKB/Swiss-Prot
  Q75UE6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Fnbp1  formin binding protein 1  LOC108348147  formin-binding protein 1-like  Data Merged 737654 PROVISIONAL
2016-08-02 LOC108348147  formin-binding protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-07-29 Fnbp1  formin binding protein 1  LOC102555088  formin-binding protein 1-like  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102555088  formin-binding protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Fnbp1  formin binding protein 1    rapostlin  Name updated 1299863 APPROVED
2004-09-10 Fnbp1  rapostlin  Rnd2    Symbol and Name updated 1299863 APPROVED
2002-08-07 Rnd2  rapostlin      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in neurons in the brain 633870