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Gene: Fnbp1 (formin binding protein 1) Rattus norvegicus

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Symbol:

Fnbp1

Name:

formin binding protein 1

RGD ID:

621350

Description:

Predicted to enable identical protein binding activity. Involved in nervous system development. Predicted to be located in intracellular membrane-bounded organelle and plasma membrane. Orthologous to human FNBP1 (formin binding protein 1); INTERACTS WITH 1,3-dinitrobenzene; 3-chloropropane-1,2-diol; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

formin-binding protein 1; formin-binding protein 1-like; formin-binding protein 17; LOC102555088; LOC108348147; rapostlin; Rnd2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FNBP1 (formin binding protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Fnbp1 (formin binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fnbp1 (formin binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FNBP1 (formin binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FNBP1 (formin binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fnbp1 (formin binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FNBP1 (formin binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FNBP1 (formin binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fnbp1 (formin binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DIRAS2 (DIRAS family GTPase 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Fnbp1 (formin binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FNBP1 (formin binding protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fnbp1a (formin binding protein 1a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BZZ1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder)
Drosophila melanogaster (fruit fly):	Cip4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	toca-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	toca-2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fnbp1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,706,814 - 34,826,770 (-)	NCBI		GRCr8
mRatBN7.2	3	14,309,067 - 14,424,378 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	17,381,603 - 17,497,198 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,966,604 - 26,082,205 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	24,213,880 - 24,329,465 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	9,865,657 - 9,936,333 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,861,237 - 9,936,405 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	15,224,331 - 15,295,695 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	10,091,465 - 10,162,829 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	10,014,013 - 10,097,567 (-)	NCBI
Celera	3	9,073,525 - 9,143,521 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy (ISO)

dystonia (ISO)

early infantile epileptic encephalopathy (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diclofenac (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

fipronil (EXP)

folic acid (ISO)

FR900359 (ISO)

gallic acid (ISO)

indometacin (ISO)

isobutanol (ISO)

L-methionine (ISO)

lead(0) (ISO)

levonorgestrel (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

Methylazoxymethanol acetate (EXP)

methylmercury chloride (ISO)

methylseleninic acid (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel dichloride (ISO)

nitrates (ISO)

nitrofen (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

phenylmercury acetate (ISO)

quercetin (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone undecanoate (ISO)

titanium dioxide (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

vitamin E (ISO)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

endocytosis (IEA)

nervous system development (IDA,IEA)

signal transduction (IEA)

Cellular Component

cell cortex (IEA)

clathrin-coated pit (IEA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

cytoskeleton (IEA)

intracellular membrane-bounded organelle (IEA,ISO)

lysosome (IEA)

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

lipid binding (IEA)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rapostlin is a novel effector of Rnd2 GTPase inducing neurite branching.	Fujita H, etal., J Biol Chem 2002 Nov 22;277(47):45428-34.
2.	The regulatory subunit of PDE6 interacts with PACSIN in photoreceptors.	Houdart F, etal., Mol Vis. 2005 Dec 9;11:1061-70.
3.	Identification of splicing variants of Rapostlin, a novel RND2 effector that interacts with neural Wiskott-Aldrich syndrome protein and induces neurite branching.	Kakimoto T, etal., J Biol Chem. 2004 Apr 2;279(14):14104-10. Epub 2004 Jan 19.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14502124	PMID:15057822	PMID:15252009	PMID:16303198	PMID:17512409	PMID:21768103	PMID:25931508

Genomics

Comparative Map Data

Fnbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,706,814 - 34,826,770 (-)	NCBI		GRCr8
mRatBN7.2	3	14,309,067 - 14,424,378 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	17,381,603 - 17,497,198 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,966,604 - 26,082,205 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	24,213,880 - 24,329,465 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	9,865,657 - 9,936,333 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,861,237 - 9,936,405 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	15,224,331 - 15,295,695 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	10,091,465 - 10,162,829 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	10,014,013 - 10,097,567 (-)	NCBI
Celera	3	9,073,525 - 9,143,521 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

FNBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	129,887,187 - 130,053,879 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	129,887,187 - 130,043,189 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	132,649,466 - 132,805,468 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	131,689,287 - 131,845,294 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	129,729,019 - 129,884,981	NCBI
Celera	9	103,300,574 - 103,456,565 (-)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	102,248,422 - 102,404,813 (-)	NCBI		HuRef
CHM1_1	9	132,798,466 - 132,954,640 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	142,091,913 - 142,247,931 (-)	NCBI		T2T-CHM13v2.0

Fnbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	30,916,218 - 31,032,046 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	30,916,218 - 31,032,020 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	31,026,206 - 31,145,454 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	31,026,206 - 31,142,008 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	30,881,726 - 30,997,528 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	30,848,215 - 30,964,015 (-)	NCBI		MGSCv36	mm8
Celera	2	30,732,020 - 30,848,624 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	21.78	NCBI

Fnbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	85,038 - 137,705 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	86,004 - 137,631 (-)	NCBI	ChiLan1.0	ChiLan1.0

FNBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	9,305,200 - 9,462,241 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	9,307,600 - 9,464,585 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	101,014,402 - 101,171,302 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	129,671,784 - 129,777,418 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	129,675,132 - 129,780,989 (-)	Ensembl	panpan1.1		panPan2

FNBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	53,809,865 - 53,962,685 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	53,812,632 - 53,959,481 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	53,007,089 - 53,159,541 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	54,709,036 - 54,860,240 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	54,719,822 - 54,860,240 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	53,485,081 - 53,637,532 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	53,807,098 - 53,959,600 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	53,899,997 - 54,052,638 (+)	NCBI		UU_Cfam_GSD_1.0

Fnbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	197,310,126 - 197,423,315 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	17,085,443 - 17,142,296 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	17,078,653 - 17,142,293 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FNBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	270,042,369 - 270,180,188 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	270,042,367 - 270,180,212 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	303,952,054 - 304,034,814 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FNBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	8,098,109 - 8,251,543 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	8,098,092 - 8,249,182 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	7,190,770 - 7,350,108 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fnbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	5,513,533 - 5,558,071 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	5,479,154 - 5,563,903 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Fnbp1
959 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	487
Count of miRNA genes:	110
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000011224, ENSRNOT00000036251, ENSRNOT00000042798, ENSRNOT00000048428, ENSRNOT00000060562
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	10434306	24512004	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat

Markers in Region

BF399073

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	14,337,457 - 14,337,618 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,887,100 - 9,887,260	NCBI	Rnor6.0
Rnor_5.0	3	15,245,774 - 15,245,934	UniSTS	Rnor5.0
RGSC_v3.4	3	10,112,908 - 10,113,068	UniSTS	RGSC3.4
Celera	3	9,094,967 - 9,095,127	UniSTS
RH 3.4 Map	3	37.9	UniSTS
Cytogenetic Map	3	p12	UniSTS

RH142088

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	14,325,150 - 14,325,352 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,874,795 - 9,874,996	NCBI	Rnor6.0
Rnor_5.0	3	15,233,469 - 15,233,670	UniSTS	Rnor5.0
RGSC_v3.4	3	10,100,603 - 10,100,804	UniSTS	RGSC3.4
Celera	3	9,082,663 - 9,082,864	UniSTS
RH 3.4 Map	3	50.1	UniSTS
Cytogenetic Map	3	p12	UniSTS

BE105446

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	14,315,673 - 14,315,863 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,865,320 - 9,865,509	NCBI	Rnor6.0
Rnor_5.0	3	15,223,994 - 15,224,183	UniSTS	Rnor5.0
RGSC_v3.4	3	10,091,128 - 10,091,317	UniSTS	RGSC3.4
Celera	3	9,073,188 - 9,073,377	UniSTS
RH 3.4 Map	3	45.6	UniSTS
Cytogenetic Map	3	p12	UniSTS

AU048475

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	14,327,968 - 14,328,102 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,877,613 - 9,877,746	NCBI	Rnor6.0
Rnor_5.0	3	15,236,287 - 15,236,420	UniSTS	Rnor5.0
RGSC_v3.4	3	10,103,421 - 10,103,554	UniSTS	RGSC3.4
Celera	3	9,085,481 - 9,085,612	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001393677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_138914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB073208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB126168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB126169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB126170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB126171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB126172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC125306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011224 ⟹ ENSRNOP00000011224

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,315,633 - 14,387,311 (-)	Ensembl
Rnor_6.0 Ensembl	3	9,865,657 - 9,936,352 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000042798 ⟹ ENSRNOP00000049838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,315,633 - 14,386,819 (-)	Ensembl
Rnor_6.0 Ensembl	3	9,861,237 - 9,936,405 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096687 ⟹ ENSRNOP00000091155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106082 ⟹ ENSRNOP00000088096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110957 ⟹ ENSRNOP00000092158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113314 ⟹ ENSRNOP00000089940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119171 ⟹ ENSRNOP00000077955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119242 ⟹ ENSRNOP00000082158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl

RefSeq Acc Id:

NM_001393677 ⟹ NP_001380606

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,706,814 - 34,822,117 (-)	NCBI
mRatBN7.2	3	14,309,067 - 14,424,378 (-)	NCBI

RefSeq Acc Id:

NM_001393678 ⟹ NP_001380607

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,713,374 - 34,822,117 (-)	NCBI
mRatBN7.2	3	14,315,629 - 14,424,378 (-)	NCBI

RefSeq Acc Id:

NM_001393679 ⟹ NP_001380608

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,713,374 - 34,822,117 (-)	NCBI
mRatBN7.2	3	14,315,629 - 14,424,378 (-)	NCBI

RefSeq Acc Id:

NM_001393680 ⟹ NP_001380609

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,713,374 - 34,822,117 (-)	NCBI
mRatBN7.2	3	14,315,629 - 14,424,378 (-)	NCBI

RefSeq Acc Id:

NM_001393681 ⟹ NP_001380610

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,713,374 - 34,822,117 (-)	NCBI
mRatBN7.2	3	14,315,629 - 14,424,378 (-)	NCBI

RefSeq Acc Id:

NM_001393682 ⟹ NP_001380611

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,713,374 - 34,822,117 (-)	NCBI
mRatBN7.2	3	14,315,629 - 14,424,378 (-)	NCBI

RefSeq Acc Id:

NM_138914 ⟹ NP_620269

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,713,374 - 34,822,117 (-)	NCBI
mRatBN7.2	3	14,315,629 - 14,424,378 (-)	NCBI
Rnor_6.0	3	9,865,657 - 9,936,333 (-)	NCBI
Rnor_5.0	3	15,224,331 - 15,295,695 (-)	NCBI
RGSC_v3.4	3	10,091,465 - 10,162,829 (-)	RGD
Celera	3	9,073,525 - 9,143,521 (-)	RGD

Sequence:

show sequence

ATGAGCTGGGGCACTGAGCTCTGGGATCAGTTTGACAACTTGGAAAAACACACACAGTGGGGAA
TCGACATTCTTGAGAAATACATCAAGTTCGTCAAGGAGAGAACGGAGATTGAGCTCAGCTATGC
CAAACAGCTCAGGAATCTTTCAAAGAAATACCAACCCAAGAAGAACTCGAAGGAAGAAGAGGAA
TACAAGTACACGGCGTGTAAAGCGTTTCTTTCCACCCTGAATGAGTTGAATGACTACGCCGGGC
AGCATGAGGTCATCTCCGAGAACATGACGTCACAGATCACGGTGGACCTGGTGCGCTACGTACA
GGAGCTGAAGCAGGAGAGGAAATCGAATTTCCATGATGGACGGAAGGCTCAGCAGCACATAGAG
ACGTGCTGGAAGCAGCTGGAGTCGAGTAAGAGGAGGTTTGAGCGGGACTGTAAGGAGGCCGACC
GTGCACAGCAGTACTTTGAGAAAATGGACGCCGACATCAATGTGACCAAGGCGGATGTGGAAAA
GGCGCGACAACAAGCTCAGATGCGCCAGCAAATGGCAGAGGACAGCAAAGCTGATTACTCCTTA
ATCCTGCAGAGGTTCAACCAGGAGCAGTGGGAGTACTACCACACCCACATCCCCAACATCTTCC
AGAAAATCCAAGAGATGGAGGAGAGGAGGATTGTGCGCATTGGAGAGTCCATGAAGACGTATGC
AGAGGTGGACCGGCAGGTGATACCCATCATCGGGAAGTGCCTGGACGGTATAGTGAAGGCGGCC
GAGTCTATTGACCAGAAAAACGACTCCCAGCTAGTCGTAGAAGCCTATAAGTCAGGATTCGAGC
CTCCCGGAGACATTGAATTCGAAGATTACACACAGCCCATGAAACGCACGGTGTCAGACAACAG
CCTTTCCAGTTCCAAAGAAGGCAAGCCCGAGCTCAAGTTTGGAGGCAAGTCCAGAGGCAAGCTC
TGGCCGTTCATCAAGAAAAACAAGCTTATGACCCTTTTAACATCCCCCCACCAGCCTCCCCCTC
CTCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAA
GGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGG
AGCCTAAAGCGTGGGCTTTCGCTCAAGCTGGGTGTCACCCCGGAAGACTTCAGCAACTTCCCGC
CTGAGCAGAGAAGGAAAAAACTACAACAGAAAGTGGACGATCTCAATAAAGAGATCCAAAAGGA
GACCGACCAGAGAGACGCCATCACTAAAATGAAAGATGTGTACCTAAAGAACCCTCAGATGGGA
GACCCGGCCAGCTTGGACCACAAACTCGCCGAAGTCACCCAGAACATAGAAAAACTGCGGCTGG
AGGCTCACAAGTTCGAGGCCTGGCTGGCTGAGGTGGAAGGCAGACTCCCAGCTCGGAGTGAGCA
GGCACGCCGGCAAAGTGGGCTGTACGACGGCCAGACACACCAGACGGTCACTAACTGCGCCCAG
GACCGGGAGAGCCCAGATGGTAGTTACACAGAAGAGCAAAGCCAGGAGAGCGAGCACAAGGTGC
TGGCCACGGACTTCGACGATGAGTTCGACGATGAGGAGCCGCTTCCTGCCATCGGGACCTGCAA
GGCCCTCTACACCTTTGAAGGTCAGAACGAAGGCACCATTTCGGTAGTTGAAGGAGAAACGCTG
AGCGTGATTGAGGAGGACAAAGGCGATGGGTGGACACGCATCCGCAGAAACGAAGACGAGGAGG
GTTACGTCCCCACTTCCTACGTCGAAGTCTATTTAGACAAAAACGCCAAAGGTGCTAAGACTTA
TATTTAA

hide sequence

RefSeq Acc Id:

XM_063283058 ⟹ XP_063139128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,710,295 - 34,822,175 (-)	NCBI

RefSeq Acc Id:

XM_063283059 ⟹ XP_063139129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,710,295 - 34,822,174 (-)	NCBI

RefSeq Acc Id:

XM_063283060 ⟹ XP_063139130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,706,814 - 34,822,175 (-)	NCBI

RefSeq Acc Id:

XM_063283061 ⟹ XP_063139131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,706,814 - 34,822,174 (-)	NCBI

RefSeq Acc Id:

XM_063283062 ⟹ XP_063139132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,710,295 - 34,822,174 (-)	NCBI

RefSeq Acc Id:

XM_063283063 ⟹ XP_063139133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,710,295 - 34,822,174 (-)	NCBI

RefSeq Acc Id:

XM_063283064 ⟹ XP_063139134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,706,814 - 34,822,174 (-)	NCBI

RefSeq Acc Id:

XM_063283065 ⟹ XP_063139135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,706,814 - 34,822,179 (-)	NCBI

RefSeq Acc Id:

XM_063283066 ⟹ XP_063139136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,710,295 - 34,822,174 (-)	NCBI

RefSeq Acc Id:

XM_063283067 ⟹ XP_063139137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,710,295 - 34,826,770 (-)	NCBI

RefSeq Acc Id:

XM_063283068 ⟹ XP_063139138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,706,814 - 34,822,172 (-)	NCBI

RefSeq Acc Id:

XM_063283069 ⟹ XP_063139139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,710,295 - 34,822,174 (-)	NCBI

RefSeq Acc Id:

XM_063283070 ⟹ XP_063139140

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,706,814 - 34,822,173 (-)	NCBI

RefSeq Acc Id:

XM_063283071 ⟹ XP_063139141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,706,814 - 34,822,172 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001380606	(Get FASTA)	NCBI Sequence Viewer
	NP_001380607	(Get FASTA)	NCBI Sequence Viewer
	NP_001380608	(Get FASTA)	NCBI Sequence Viewer
	NP_001380609	(Get FASTA)	NCBI Sequence Viewer
	NP_001380610	(Get FASTA)	NCBI Sequence Viewer
	NP_001380611	(Get FASTA)	NCBI Sequence Viewer
	NP_620269	(Get FASTA)	NCBI Sequence Viewer
	XP_063139128	(Get FASTA)	NCBI Sequence Viewer
	XP_063139129	(Get FASTA)	NCBI Sequence Viewer
	XP_063139130	(Get FASTA)	NCBI Sequence Viewer
	XP_063139131	(Get FASTA)	NCBI Sequence Viewer
	XP_063139132	(Get FASTA)	NCBI Sequence Viewer
	XP_063139133	(Get FASTA)	NCBI Sequence Viewer
	XP_063139134	(Get FASTA)	NCBI Sequence Viewer
	XP_063139135	(Get FASTA)	NCBI Sequence Viewer
	XP_063139136	(Get FASTA)	NCBI Sequence Viewer
	XP_063139137	(Get FASTA)	NCBI Sequence Viewer
	XP_063139138	(Get FASTA)	NCBI Sequence Viewer
	XP_063139139	(Get FASTA)	NCBI Sequence Viewer
	XP_063139140	(Get FASTA)	NCBI Sequence Viewer
	XP_063139141	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB90845	(Get FASTA)	NCBI Sequence Viewer
	BAD13422	(Get FASTA)	NCBI Sequence Viewer
	BAD13423	(Get FASTA)	NCBI Sequence Viewer
	BAD13424	(Get FASTA)	NCBI Sequence Viewer
	BAD13425	(Get FASTA)	NCBI Sequence Viewer
	BAD13426	(Get FASTA)	NCBI Sequence Viewer
	EDL93282	(Get FASTA)	NCBI Sequence Viewer
	EDL93283	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011224.8
	ENSRNOP00000049838
	ENSRNOP00000049838.6
	ENSRNOP00000077955.1
	ENSRNOP00000082158
	ENSRNOP00000082158.1
	ENSRNOP00000088096
	ENSRNOP00000088096.1
	ENSRNOP00000089940.1
	ENSRNOP00000091155
	ENSRNOP00000091155.1
	ENSRNOP00000092158
	ENSRNOP00000092158.1
GenBank Protein	Q8R511	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_620269 ⟸ NM_138914
- Peptide Label:	isoform 1
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSWGTELWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEE YKYTACKAFLSTLNELNDYAGQHEVISENMTSQITVDLVRYVQELKQERKSNFHDGRKAQQHIE TCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQMRQQMAEDSKADYSL ILQRFNQEQWEYYHTHIPNIFQKIQEMEERRIVRIGESMKTYAEVDRQVIPIIGKCLDGIVKAA ESIDQKNDSQLVVEAYKSGFEPPGDIEFEDYTQPMKRTVSDNSLSSSKEGKPELKFGGKSRGKL WPFIKKNKLMTLLTSPHQPPPPPPASASPSAVPNGPQSPKQQKEPLSHRFNEFMTSKPKIHCFR SLKRGLSLKLGVTPEDFSNFPPEQRRKKLQQKVDDLNKEIQKETDQRDAITKMKDVYLKNPQMG DPASLDHKLAEVTQNIEKLRLEAHKFEAWLAEVEGRLPARSEQARRQSGLYDGQTHQTVTNCAQ DRESPDGSYTEEQSQESEHKVLATDFDDEFDDEEPLPAIGTCKALYTFEGQNEGTISVVEGETL SVIEEDKGDGWTRIRRNEDEEGYVPTSYVEVYLDKNAKGAKTYI hide sequence

Ensembl Acc Id:

ENSRNOP00000011224 ⟸ ENSRNOT00000011224

Ensembl Acc Id:

ENSRNOP00000049838 ⟸ ENSRNOT00000042798

Ensembl Acc Id:

ENSRNOP00000077955 ⟸ ENSRNOT00000119171

Ensembl Acc Id:

ENSRNOP00000088096 ⟸ ENSRNOT00000106082

Ensembl Acc Id:

ENSRNOP00000092158 ⟸ ENSRNOT00000110957

Ensembl Acc Id:

ENSRNOP00000082158 ⟸ ENSRNOT00000119242

Ensembl Acc Id:

ENSRNOP00000091155 ⟸ ENSRNOT00000096687

Ensembl Acc Id:

ENSRNOP00000089940 ⟸ ENSRNOT00000113314

RefSeq Acc Id:	NP_001380606 ⟸ NM_001393677
- Peptide Label:	isoform 2
- UniProtKB:	Q8R511 (UniProtKB/Swiss-Prot), Q75UE5 (UniProtKB/Swiss-Prot), Q75UE4 (UniProtKB/Swiss-Prot), Q75UE3 (UniProtKB/Swiss-Prot), Q75UE2 (UniProtKB/Swiss-Prot), Q75UE6 (UniProtKB/Swiss-Prot), Z4YNH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380611 ⟸ NM_001393682
- Peptide Label:	isoform 7
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380610 ⟸ NM_001393681
- Peptide Label:	isoform 6
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380609 ⟸ NM_001393680
- Peptide Label:	isoform 5
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380608 ⟸ NM_001393679
- Peptide Label:	isoform 4
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380607 ⟸ NM_001393678
- Peptide Label:	isoform 3
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139135 ⟸ XM_063283065
- Peptide Label:	isoform X8
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL), A0A8I6AH08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139130 ⟸ XM_063283060
- Peptide Label:	isoform X3
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139134 ⟸ XM_063283064
- Peptide Label:	isoform X7
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139131 ⟸ XM_063283061
- Peptide Label:	isoform X4
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL), A0A8I6GFT9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139140 ⟸ XM_063283070
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL), A0A8I6AD72 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139141 ⟸ XM_063283071
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139138 ⟸ XM_063283068
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL), A0A8I5ZUF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139137 ⟸ XM_063283067
- Peptide Label:	isoform X10
- UniProtKB:	F1LZF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139128 ⟸ XM_063283058
- Peptide Label:	isoform X1
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139139 ⟸ XM_063283069
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139136 ⟸ XM_063283066
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6A8B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139133 ⟸ XM_063283063
- Peptide Label:	isoform X6
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139132 ⟸ XM_063283062
- Peptide Label:	isoform X5
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139129 ⟸ XM_063283059
- Peptide Label:	isoform X2
- UniProtKB:	Z4YNH5 (UniProtKB/TrEMBL)

Protein Domains

F-BAR REM-1 SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8R511-F1-model_v2	AlphaFold	Q8R511	1-616	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621350	AgrOrtholog
BioCyc Gene	G2FUF-50184	BioCyc
Ensembl Genes	ENSRNOG00000008258	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011224.9	UniProtKB/TrEMBL
	ENSRNOT00000042798	ENTREZGENE
	ENSRNOT00000042798.7	UniProtKB/TrEMBL
	ENSRNOT00000096687	ENTREZGENE
	ENSRNOT00000096687.1	UniProtKB/TrEMBL
	ENSRNOT00000106082	ENTREZGENE
	ENSRNOT00000106082.1	UniProtKB/TrEMBL
	ENSRNOT00000110957	ENTREZGENE
	ENSRNOT00000110957.1	UniProtKB/TrEMBL
	ENSRNOT00000113314.1	UniProtKB/TrEMBL
	ENSRNOT00000119171.1	UniProtKB/Swiss-Prot
	ENSRNOT00000119242	ENTREZGENE
	ENSRNOT00000119242.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	6.10.140.470	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	F_BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FCH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FNBP1_F-BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FNBP1_SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HR1_rho-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:192348	UniProtKB/Swiss-Prot
NCBI Gene	192348	ENTREZGENE
PANTHER	FCH AND DOUBLE SH3 DOMAINS PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR15735:SF13	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	FCH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Fnbp1	PhenoGen
PROSITE	F_BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	REM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008258	RatGTEx
SMART	FCH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50044	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZUF2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8B9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AD72	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AH08	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GFT9	ENTREZGENE, UniProtKB/TrEMBL
	A6JU14_RAT	UniProtKB/TrEMBL
	A6JU15_RAT	UniProtKB/TrEMBL
	F1LZF2	ENTREZGENE, UniProtKB/TrEMBL
	FNBP1_RAT	UniProtKB/Swiss-Prot
	Q75UE2	ENTREZGENE
	Q75UE3	ENTREZGENE
	Q75UE4	ENTREZGENE
	Q75UE5	ENTREZGENE
	Q75UE6	ENTREZGENE
	Q8R511	ENTREZGENE
	Z4YNH5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	Q75UE2	UniProtKB/Swiss-Prot
	Q75UE3	UniProtKB/Swiss-Prot
	Q75UE4	UniProtKB/Swiss-Prot
	Q75UE5	UniProtKB/Swiss-Prot
	Q75UE6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Fnbp1	formin binding protein 1	LOC108348147	formin-binding protein 1-like	Data merged from RGD:11394962	737654	PROVISIONAL
2016-08-02	LOC108348147	formin-binding protein 1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2015-07-29	Fnbp1	formin binding protein 1	LOC102555088	formin-binding protein 1-like	Data merged from RGD:7591549	737654	PROVISIONAL
2013-12-18	LOC102555088	formin-binding protein 1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-30	Fnbp1	formin binding protein 1		rapostlin	Name updated	1299863	APPROVED
2004-09-10	Fnbp1	rapostlin	Rnd2		Symbol and Name updated	1299863	APPROVED
2002-08-07	Rnd2	rapostlin			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in neurons in the brain	633870

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar