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Gene: Fnbp1 (formin binding protein 1) Ictidomys tridecemlineatus

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Symbol:

Fnbp1

Name:

formin binding protein 1

RGD ID:

12582178

Description:

ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN nervous system development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Cancer, Familial (ortholog); colon adenocarcinoma (ortholog); FOUND IN cell cortex (inferred); cytoskeleton (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

formin binding protein 1, transcript variant X1; formin binding protein 1, transcript variant X10; formin binding protein 1, transcript variant X11; formin binding protein 1, transcript variant X12; formin binding protein 1, transcript variant X13; formin binding protein 1, transcript variant X14; formin binding protein 1, transcript variant X15; formin binding protein 1, transcript variant X2; formin binding protein 1, transcript variant X3; formin binding protein 1, transcript variant X4; formin binding protein 1, transcript variant X5; formin binding protein 1, transcript variant X6; formin binding protein 1, transcript variant X7; formin binding protein 1, transcript variant X8; formin binding protein 1, transcript variant X9; formin-binding protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mIctTri1.hap1 - mIctTri1.hap1 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	4	204,494,689 - 204,597,576 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404947	197,310,126 - 197,423,315 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	17,085,443 - 17,142,296 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	17,078,653 - 17,142,293 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

Breast Cancer, Familial (ISO)

colon adenocarcinoma (ISO)

esophageal cancer (ISO)

hepatocellular carcinoma (ISO)

lung cancer (ISO)

ovarian serous cystadenocarcinoma (ISO)

stomach cancer (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

uterine carcinosarcoma (ISO)

uterine corpus endometrial carcinoma (ISO)

uveal melanoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (IEA)

nervous system development (ISO)

signal transduction (IEA)

Cellular Component

cell cortex (IEA)

cytoskeleton (IEA)

plasma membrane (IEA)

Molecular Function

identical protein binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Fnbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	4	204,494,689 - 204,597,576 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404947	197,310,126 - 197,423,315 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	17,085,443 - 17,142,296 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	17,078,653 - 17,142,293 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FNBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	129,887,187 - 130,053,879 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	129,887,179 - 130,043,243 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	9	132,649,466 - 132,805,468 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	131,689,287 - 131,845,294 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	129,729,019 - 129,884,981	NCBI
Celera	9	103,300,574 - 103,456,565 (-)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	102,248,422 - 102,404,813 (-)	NCBI		HuRef
CHM1_1	9	132,798,466 - 132,954,640 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	142,091,913 - 142,258,605 (-)	NCBI		T2T-CHM13v2.0

Fnbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	30,916,218 - 31,032,046 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	30,916,211 - 31,032,229 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	31,026,206 - 31,145,454 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	31,026,206 - 31,142,008 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	2	30,881,726 - 30,997,528 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	30,848,215 - 30,964,015 (-)	NCBI		MGSCv36	mm8
Celera	2	30,732,020 - 30,848,624 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	21.78	NCBI

Fnbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,706,814 - 34,826,770 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	34,706,814 - 34,822,117 (-)	Ensembl				GRCr8
mRatBN7.2	3	14,309,067 - 14,424,378 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	14,309,640 - 14,424,881 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	17,381,603 - 17,497,198 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,966,604 - 26,082,205 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	24,213,880 - 24,329,465 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	3	32,255,651 - 32,371,022 (-)	NCBI
Lyon_Normotensive	3	39,217,418 - 39,332,828 (-)	NCBI
Lyon_Hypertensive	3	31,116,444 - 31,231,857 (-)	NCBI
F344_StmMcwi	3	12,316,729 - 12,432,126 (-)	NCBI
Rnor_6.0	3	9,865,657 - 9,936,333 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,861,237 - 9,936,405 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	3	15,224,331 - 15,295,695 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	10,091,465 - 10,162,829 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	9,073,525 - 9,143,521 (-)	NCBI		Celera
RGSC_v3.1	3	10,014,013 - 10,097,567 (-)	NCBI
Cytogenetic Map	3	p12	NCBI

Fnbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	85,038 - 137,705 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955513	86,004 - 137,631 (-)	NCBI	ChiLan1.0	ChiLan1.0

FNBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	9,305,200 - 9,462,241 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	9,307,600 - 9,464,585 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	101,014,402 - 101,171,302 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	129,671,784 - 129,777,418 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	129,675,132 - 129,780,989 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

FNBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	53,809,865 - 53,962,685 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	53,812,632 - 53,959,481 (+)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	53,007,089 - 53,159,541 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	54,709,036 - 54,860,240 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	54,719,822 - 54,860,240 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	53,485,081 - 53,637,532 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	53,807,098 - 53,959,600 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	53,899,997 - 54,052,638 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

FNBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	270,042,369 - 270,180,188 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	1	270,042,367 - 270,180,212 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	303,952,054 - 304,034,814 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FNBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	12	105,365,811 - 105,525,522 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666079	7,190,770 - 7,350,108 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	12	8,098,109 - 8,251,543 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	8,098,092 - 8,249,182 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Fnbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	5,479,154 - 5,563,903 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624760	5,513,533 - 5,558,071 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	12	4,738,137 - 4,812,713 (+)	Ensembl

Fnbp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	4,484,881 - 4,599,148 (+)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005321079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078048480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000013584 ⟹ ENSSTOP00000012172

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	17,085,443 - 17,142,296 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000034105 ⟹ ENSSTOP00000024970

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	17,085,443 - 17,142,296 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000034463 ⟹ ENSSTOP00000025790

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	17,085,443 - 17,142,296 (-)	Ensembl

RefSeq Acc Id:

XM_013356675 ⟹ XP_013212129

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,597,576 (-)	NCBI
HiC_Itri_2	NW_024404947	197,316,426 - 197,414,553 (-)	NCBI
SpeTri2.0	NW_004936487	17,084,953 - 17,142,287 (-)	NCBI

Sequence:

show sequence

GACAACTTAGAAAAACACACACAGTGGGGAATCGACGTTCTTGAGAAATACATCAAGTTTGTAA
AGGAAAGAACTGAGATCGAGCTCAGCTATGCAAAGCAACTCAGGAATCTTTCGAAGAAATACCA
ACCCAAGAAGAACTCGAAGGAGGAGGAGGAATACAAGTACACGTCGTGCAAGGCCTTTCTTTCC
ACCCTGAACGAGATGAACGACTACGCGGGGCAGCACGAGGTCATCTCGGAGAACATGACGTCGC
AGATCACCGTGGACCTGGCGCGCTTCGTGCAGGAGCTGAAGCAGGAGAGGAAATCGAACTTTCA
CGATGGCCGGAAAGCGCAGCAGCACATGGAGACCTGCTGGAAGCAGCTTGAGTCCAGCAAGCGG
CGGTTCGAGCGGGACTGCAAGGAGGCTGACCGGGCGCAGCAGTACTTCGAGAAGATGGACGCGG
ACATCAACGTGACCAAGGCCGACGTGGAGAAGGCTCGGCAGCAAGCTCAGATACGTCACCAGAT
GGCAGAGGACAGCAAGGCAGACTACTCGTCGAGCCTTCAGAAGTTCAACCAGGAGCAGCACGAG
TACTACCACACCCACATCCCCAGCATCTTCCAGAAAATCCAAGAGATGGAGGAAAGGCGGATCG
TGAGGATCGGGGAGTCCATGAAGACGTATGCCGAGGTGGACCGGCAGGTGATCCCCATCATCGG
CAAGTGCTTGGACGGGATAGTGAAGGCGGCCGAGGCCATCAACCAGAAGAGCGACTCACAGCTG
GTAATAGAAGCTTATAAGTCGGGCTTTGAGCCCCCCGGAGACATTGAATTTGAGGACTACACGC
AGCCCATGAAACGCACCGTGTCCGACAACAGCCTCTCAAATTCCAGAGGAGACGGCAAGCCCGA
GCTCAAATTCGGTGGCAAATCCAAAGGAAAGCTATGGCCGTTCATCAAGAAAAATAAGCTTGTG
TCCCTCTTAACATCCCCCCATCAGCCTCCCCCTCCTCCCCCCGCCTCTGCCTCACCCTCTGCTG
TTCCCAACGGCCCCCAGTCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTT
CATGATCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGTGGGCTTTCTCTCAAGCTG
GGCGCCACCCCCGAGGACTTCAGCAACCTCCCCCCTGAACAAAGGAGGAAAAAGCTCCAACAGA
AAGTCGATGAACTAAATAAAGAAATTCAAAAGGAGATGGATCAAAGAGACGCTATAACCAAAAT
GAAAGACGTCTACCTGAAGAACCCGCAGATGGGAGACCCGGCCAGTCTGGATCACAAACTGACA
GAAGTCAGCCAAAACATAGAGAAGCTGAGGCTAGAGGCCCAGAAATTTGAGGCCTGGCTGGCAG
AGGTGGAAGGCCGGCTCCCCGCGCGAGGCGAGCAGGCGCGGCGGCAGAGCGGGATGTACGACGG
CCAGGGCGCCCCGACGACGGCCAACAGCTGCGCGCAGGACCGCGAGAGCAGCCCCGATGGCAGT
TACACGGAGGAGCGGAGCCAGGAGAACGAGGTGAAGGTGCTGGCCACCGACTTCGACGACGAGT
TCGATGACGAGGAGCCCCTTCCCGCCATAGGGACCTGCAAGGCCCTCTACACCTTTGAAGGTCA
GAATGAAGGAACCATTTCCGTGATTGAAGGAGAAATCCTGTACGTCATAGAGGAAGACAAGGGC
GACGGGTGGACCCGCATCCGGAGGAACGAGGACGAAGAGGGCTATGTCCCCACCTCGTACGTCG
AAGTCTATTTGGACAAAAATGCCAAAGGTGCTAAGACTTATATTTAATACCACTTAAAACCTTT
TTAAAACTTGGAGTTGTCCCTCCCCACAACCGTGACTGTTACAGGCAGACCCGCGGAGGACCGG
ATGCGCGGCGGGGTGGCGCGGTGACCGTGGGCCCCGCACGCCGAGTCTCCTTGTCTGTCTAAGC
TTTGGCTAAAATCAAGTTTCACTTGCTGATGAGATTGTGTGTGAAGCTGCCAACTGCCAACTTA
TATCTGTGTCACTTGAAACCTGATAAAACATTCCTCCTTTCGGCAGCATCTGTAGATAACGAGA
AAAAAAAAAAAGTCGCCTTCTAGCTTTTAATTAATATTTCTCAATTAAAAAGTCCACACACATC
ACGAGGCACCAGAGGGCCTCGGCTGGTGTCTGCCACGGATGGCCTTGCAGGAGGATGTGACCCT
CGCTGTAACTTAATAAATGCAACTATGCTAGTTTGTTGAGTCACAGTCTGTCCAGGGGGACAGT
CATAAATAAAATCTTCCCTCTCTAA

hide sequence

RefSeq Acc Id:

XM_078048461 ⟹ XP_077904587

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048462 ⟹ XP_077904588

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048463 ⟹ XP_077904589

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,494,689 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048464 ⟹ XP_077904590

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048465 ⟹ XP_077904591

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048467 ⟹ XP_077904593

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048468 ⟹ XP_077904594

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048469 ⟹ XP_077904595

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048470 ⟹ XP_077904596

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048471 ⟹ XP_077904597

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048472 ⟹ XP_077904598

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048473 ⟹ XP_077904599

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048474 ⟹ XP_077904600

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048475 ⟹ XP_077904601

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048476 ⟹ XP_077904602

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048477 ⟹ XP_077904603

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048478 ⟹ XP_077904604

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048479 ⟹ XP_077904605

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,498,475 - 204,596,859 (-)	NCBI

RefSeq Acc Id:

XM_078048480 ⟹ XP_077904606

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
mIctTri1.hap1	4	204,515,929 - 204,596,859 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013212129	(Get FASTA)	NCBI Sequence Viewer
	XP_077904587	(Get FASTA)	NCBI Sequence Viewer
	XP_077904588	(Get FASTA)	NCBI Sequence Viewer
	XP_077904589	(Get FASTA)	NCBI Sequence Viewer
	XP_077904590	(Get FASTA)	NCBI Sequence Viewer
	XP_077904591	(Get FASTA)	NCBI Sequence Viewer
	XP_077904593	(Get FASTA)	NCBI Sequence Viewer
	XP_077904594	(Get FASTA)	NCBI Sequence Viewer
	XP_077904595	(Get FASTA)	NCBI Sequence Viewer
	XP_077904596	(Get FASTA)	NCBI Sequence Viewer
	XP_077904597	(Get FASTA)	NCBI Sequence Viewer
	XP_077904598	(Get FASTA)	NCBI Sequence Viewer
	XP_077904599	(Get FASTA)	NCBI Sequence Viewer
	XP_077904600	(Get FASTA)	NCBI Sequence Viewer
	XP_077904601	(Get FASTA)	NCBI Sequence Viewer
	XP_077904602	(Get FASTA)	NCBI Sequence Viewer
	XP_077904603	(Get FASTA)	NCBI Sequence Viewer
	XP_077904604	(Get FASTA)	NCBI Sequence Viewer
	XP_077904605	(Get FASTA)	NCBI Sequence Viewer
	XP_077904606	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000012172.3
	ENSSTOP00000024970.1
	ENSSTOP00000025790.1
GenBank Protein	KAG3288168	(Get FASTA)	NCBI Sequence Viewer
	KAG3288169	(Get FASTA)	NCBI Sequence Viewer
	KAG3288170	(Get FASTA)	NCBI Sequence Viewer
	KAG3288171	(Get FASTA)	NCBI Sequence Viewer
	KAG3288172	(Get FASTA)	NCBI Sequence Viewer
	KAG3288173	(Get FASTA)	NCBI Sequence Viewer
	KAG3288174	(Get FASTA)	NCBI Sequence Viewer
	KAG3288175	(Get FASTA)	NCBI Sequence Viewer
	KAG3288176	(Get FASTA)	NCBI Sequence Viewer
	KAG3288177	(Get FASTA)	NCBI Sequence Viewer
	KAG3288178	(Get FASTA)	NCBI Sequence Viewer
	KAG3288179	(Get FASTA)	NCBI Sequence Viewer
	KAG3288180	(Get FASTA)	NCBI Sequence Viewer
	KAG3288181	(Get FASTA)	NCBI Sequence Viewer
	KAG3288182	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013212129 ⟸ XM_013356675
- Peptide Label:	isoform X18
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDYAGQHEVISENMTSQITVDLARFVQELKQERKSNFHDGRKAQQHMETCWKQLESSKRRFER DCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSSLQKFNQEQHEYYHT HIPSIFQKIQEMEERRIVRIGESMKTYAEVDRQVIPIIGKCLDGIVKAAEAINQKSDSQLVIEA YKSGFEPPGDIEFEDYTQPMKRTVSDNSLSNSRGDGKPELKFGGKSKGKLWPFIKKNKLVSLLT SPHQPPPPPPASASPSAVPNGPQSPKQQKEPLSHRFNEFMISKPKIHCFRSLKRGLSLKLGATP EDFSNLPPEQRRKKLQQKVDELNKEIQKEMDQRDAITKMKDVYLKNPQMGDPASLDHKLTEVSQ NIEKLRLEAQKFEAWLAEVEGRLPARGEQARRQSGMYDGQGAPTTANSCAQDRESSPDGSYTEE RSQENEVKVLATDFDDEFDDEEPLPAIGTCKALYTFEGQNEGTISVIEGEILYVIEEDKGDGWT RIRRNEDEEGYVPTSYVEVYLDKNAKGAKTYI hide sequence

Ensembl Acc Id:

ENSSTOP00000012172 ⟸ ENSSTOT00000013584

Ensembl Acc Id:

ENSSTOP00000025790 ⟸ ENSSTOT00000034463

Ensembl Acc Id:

ENSSTOP00000024970 ⟸ ENSSTOT00000034105

RefSeq Acc Id:	XP_077904589 ⟸ XM_078048463
- Peptide Label:	isoform X3
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904605 ⟸ XM_078048479
- Peptide Label:	isoform X18
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904604 ⟸ XM_078048478
- Peptide Label:	isoform X17
- UniProtKB:	A0A287CWT5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904603 ⟸ XM_078048477
- Peptide Label:	isoform X16
- UniProtKB:	A0A287CWT5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904602 ⟸ XM_078048476
- Peptide Label:	isoform X15
- UniProtKB:	A0A287CWT5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904601 ⟸ XM_078048475
- Peptide Label:	isoform X14
- UniProtKB:	A0A287CWT5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904600 ⟸ XM_078048474
- Peptide Label:	isoform X13
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904599 ⟸ XM_078048473
- Peptide Label:	isoform X12
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904598 ⟸ XM_078048472
- Peptide Label:	isoform X11
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904597 ⟸ XM_078048471
- Peptide Label:	isoform X10
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904596 ⟸ XM_078048470
- Peptide Label:	isoform X9
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904595 ⟸ XM_078048469
- Peptide Label:	isoform X8
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904594 ⟸ XM_078048468
- Peptide Label:	isoform X7
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904593 ⟸ XM_078048467
- Peptide Label:	isoform X6
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904591 ⟸ XM_078048465
- Peptide Label:	isoform X5
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904590 ⟸ XM_078048464
- Peptide Label:	isoform X4
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904588 ⟸ XM_078048462
- Peptide Label:	isoform X2
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904587 ⟸ XM_078048461
- Peptide Label:	isoform X1
- UniProtKB:	I3MLA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_077904606 ⟸ XM_078048480
- Peptide Label:	isoform X19

Protein Domains

F-BAR REM-1 SH3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013583	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015020671	ENTREZGENE
Ensembl Transcript	ENSSTOT00000013584.3	UniProtKB/TrEMBL
	ENSSTOT00000034105.1	UniProtKB/TrEMBL
	ENSSTOT00000034463.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/TrEMBL
	6.10.140.470	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/TrEMBL
	F_BAR	UniProtKB/TrEMBL
	FCH_dom	UniProtKB/TrEMBL
	FNBP1_F-BAR	UniProtKB/TrEMBL
	FNBP1_SH3	UniProtKB/TrEMBL
	HR1_rho-bd	UniProtKB/TrEMBL
	HR1_TOCA	UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
NCBI Gene	Fnbp1	ENTREZGENE
PANTHER	FCH AND DOUBLE SH3 DOMAINS PROTEIN	UniProtKB/TrEMBL
	PTHR15735:SF13	UniProtKB/TrEMBL
Pfam	FCH	UniProtKB/TrEMBL
	HR1_TOCA	UniProtKB/TrEMBL
	SH3_1	UniProtKB/TrEMBL
PROSITE	F_BAR	UniProtKB/TrEMBL
	REM_1	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
SMART	FCH	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/TrEMBL
	SSF50044	UniProtKB/TrEMBL
UniProt	A0A287CUG3_ICTTR	UniProtKB/TrEMBL
	A0A287CWT5	ENTREZGENE, UniProtKB/TrEMBL
	I3MLA3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar