Snord24 (small nucleolar RNA, C/D box 24) - Rat Genome Database

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Gene: Snord24 (small nucleolar RNA, C/D box 24) Rattus norvegicus
Analyze
Symbol: Snord24
Name: small nucleolar RNA, C/D box 24
RGD ID: 41058081
Description: INTERACTS WITH versicolorin A (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120101998; small nucleolar RNA SNORD24
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,637,631 - 30,637,705 (+)NCBIGRCr8
mRatBN7.2310,239,556 - 10,239,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,239,556 - 10,239,630 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,637,631 - 30,637,705 (+)NCBIGRCr8
mRatBN7.2310,239,556 - 10,239,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,239,556 - 10,239,630 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map3p13NCBI
SNORD24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,349,396 - 133,349,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,349,396 - 133,349,470 (+)EnsemblGRCh38hg38GRCh38
GRCh379136,216,251 - 136,216,325 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,206,072 - 135,206,146 (+)NCBINCBI36Build 36hg18NCBI36
Celera9106,766,737 - 106,766,811 (+)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,716,172 - 105,716,246 (+)NCBIHuRef
CHM1_19136,366,415 - 136,366,489 (+)NCBICHM1_1
T2T-CHM13v2.09145,563,336 - 145,563,410 (+)NCBIT2T-CHM13v2.0
Gm23969
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,801,273 - 26,801,346 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,801,273 - 26,801,346 (+)EnsemblGRCm39 Ensembl
GRCm38226,911,261 - 26,911,334 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,911,261 - 26,911,334 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
LOC119867266
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3228,607,302 - 28,607,376 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03213,511,940 - 13,512,014 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3213,511,940 - 13,512,014 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13213,488,467 - 13,488,541 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03213,309,664 - 13,309,738 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03226,602,996 - 26,603,070 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005503043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000098518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,239,556 - 10,239,630 (+)Ensembl
RefSeq Acc Id: XR_005503043
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,637,631 - 30,637,705 (+)NCBI
mRatBN7.2310,239,556 - 10,239,630 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50327 BioCyc
Ensembl Genes ENSRNOG00000070841 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000098518 ENTREZGENE
NCBI Gene LOC120101998 ENTREZGENE
PhenoGen Snord24 PhenoGen
RatGTEx ENSRNOG00000070841 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snord24  small nucleolar RNA, C/D box 24  LOC120101998  small nucleolar RNA SNORD24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-01-27 LOC120101998  small nucleolar RNA SNORD24      Symbol and Name status set to provisional 70820 PROVISIONAL