Ttll11 (tubulin tyrosine ligase like11) - Rat Genome Database

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Gene: Ttll11 (tubulin tyrosine ligase like11) Rattus norvegicus
Analyze
Symbol: Ttll11
Name: tubulin tyrosine ligase like11
RGD ID: 1588742
Description: Predicted to enable tubulin-glutamic acid ligase activity. Predicted to act upstream of or within microtubule severing and protein polyglutamylation. Predicted to be located in ciliary basal body. Orthologous to human TTLL11 (tubulin tyrosine ligase like 11); INTERACTS WITH atrazine; bisphenol A; 17beta-estradiol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC689746; MGC189441; similar to Tubulin--tyrosine ligase-like protein 11; tubulin polyglutamylase TTLL11; tubulin tyrosine ligase-like family, member 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2319,109,891 - 19,335,077 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl319,110,284 - 19,335,969 (-)Ensembl
Rnor_6.0315,084,244 - 15,312,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl315,084,634 - 15,278,645 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0320,395,226 - 20,621,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4314,864,228 - 15,095,120 (-)NCBIRGSC3.4rn4RGSC3.4
Celera313,823,001 - 14,048,346 (-)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:17499049   PMID:20530212  


Genomics

Comparative Map Data
Ttll11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2319,109,891 - 19,335,077 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl319,110,284 - 19,335,969 (-)Ensembl
Rnor_6.0315,084,244 - 15,312,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl315,084,634 - 15,278,645 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0320,395,226 - 20,621,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4314,864,228 - 15,095,120 (-)NCBIRGSC3.4rn4RGSC3.4
Celera313,823,001 - 14,048,346 (-)NCBICelera
Cytogenetic Map3p11NCBI
TTLL11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389121,815,674 - 122,093,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9121,815,674 - 122,093,606 (-)EnsemblGRCh38hg38GRCh38
GRCh379124,577,953 - 124,855,587 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369123,791,010 - 123,895,706 (-)NCBINCBI36hg18NCBI36
Celera995,232,653 - 95,504,178 (-)NCBI
Cytogenetic Map9q33.2NCBI
HuRef994,322,666 - 94,470,678 (-)NCBIHuRef
HuRef994,199,277 - 94,248,044 (-)NCBIHuRef
CHM1_19124,731,365 - 125,003,969 (-)NCBICHM1_1
T2T-CHM13v2.09134,011,659 - 134,290,781 (-)NCBI
Ttll11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39235,641,250 - 35,870,250 (-)NCBIGRCm39mm39
GRCm39 Ensembl235,641,253 - 35,869,925 (-)Ensembl
GRCm38235,751,240 - 35,979,820 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl235,751,241 - 35,979,913 (-)EnsemblGRCm38mm10GRCm38
MGSCv37235,606,760 - 35,835,144 (-)NCBIGRCm37mm9NCBIm37
MGSCv36235,573,235 - 35,801,305 (-)NCBImm8
Celera235,455,573 - 35,685,245 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map223.9NCBI
Ttll11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554195,968,400 - 6,205,342 (+)NCBIChiLan1.0ChiLan1.0
TTLL11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19121,281,982 - 121,559,721 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9121,326,656 - 121,559,726 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0992,940,145 - 93,218,866 (-)NCBIMhudiblu_PPA_v0panPan3
TTLL11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1960,462,698 - 60,707,423 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl960,462,275 - 60,702,330 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha959,657,612 - 59,902,418 (+)NCBI
ROS_Cfam_1.0961,378,211 - 61,630,110 (+)NCBI
ROS_Cfam_1.0 Ensembl961,377,788 - 61,624,724 (+)Ensembl
UMICH_Zoey_3.1960,152,432 - 60,397,018 (+)NCBI
UNSW_CanFamBas_1.0960,468,846 - 60,713,587 (+)NCBI
UU_Cfam_GSD_1.0960,557,916 - 60,802,487 (+)NCBI
Ttll11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947190,493,307 - 190,727,399 (-)NCBI
SpeTri2.0NW_00493648710,263,865 - 10,495,897 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTLL11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,896,304 - 262,204,251 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,896,303 - 262,204,751 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21294,245,754 - 294,383,706 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTLL11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11217,497,600 - 17,774,907 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1217,498,048 - 17,772,485 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603525,266,431 - 25,551,396 (-)NCBIVero_WHO_p1.0
Ttll11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476013,195,725 - 13,445,666 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462476013,195,523 - 13,451,127 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D3Mgh19  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,227,147 - 19,227,279 (+)MAPPERmRatBN7.2
Rnor_6.0315,203,122 - 15,203,253NCBIRnor6.0
Rnor_5.0320,513,051 - 20,513,182UniSTSRnor5.0
RGSC_v3.4314,985,492 - 14,985,624RGDRGSC3.4
RGSC_v3.4314,985,493 - 14,985,624UniSTSRGSC3.4
RGSC_v3.1314,881,865 - 14,881,996RGD
Celera313,940,141 - 13,940,272UniSTS
RH 3.4 Map3183.1UniSTS
RH 3.4 Map3183.1RGD
RH 2.0 Map3118.6RGD
Cytogenetic Map3p11UniSTS
D3Mit22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,162,371 - 19,162,581 (+)MAPPERmRatBN7.2
Rnor_6.0315,138,012 - 15,138,221NCBIRnor6.0
Rnor_5.0320,448,165 - 20,448,374UniSTSRnor5.0
RGSC_v3.4314,918,347 - 14,918,557RGDRGSC3.4
RGSC_v3.4314,918,348 - 14,918,557UniSTSRGSC3.4
RGSC_v3.1314,814,720 - 14,814,929RGD
Celera313,875,391 - 13,875,600UniSTS
RH 3.4 Map3169.01RGD
RH 3.4 Map3169.01UniSTS
Cytogenetic Map3p11UniSTS
D3Got14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,259,811 - 19,260,057 (+)MAPPERmRatBN7.2
Rnor_6.0315,235,919 - 15,236,164NCBIRnor6.0
Rnor_5.0320,545,532 - 20,545,777UniSTSRnor5.0
RGSC_v3.4315,018,534 - 15,018,780RGDRGSC3.4
RGSC_v3.4315,018,535 - 15,018,780UniSTSRGSC3.4
RGSC_v3.1314,914,907 - 14,915,152RGD
Celera313,972,422 - 13,972,667UniSTS
RH 3.4 Map3178.6UniSTS
RH 3.4 Map3178.6RGD
RH 2.0 Map3133.6RGD
Cytogenetic Map3p11UniSTS
D3Got15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,345,665 - 19,345,784 (+)MAPPERmRatBN7.2
Rnor_6.0315,322,501 - 15,322,619NCBIRnor6.0
Rnor_5.0320,632,072 - 20,632,190UniSTSRnor5.0
RGSC_v3.4315,105,697 - 15,105,816RGDRGSC3.4
RGSC_v3.4315,105,698 - 15,105,816UniSTSRGSC3.4
RGSC_v3.1315,002,070 - 15,002,188RGD
Celera314,058,535 - 14,058,653UniSTS
RH 3.4 Map3176.7UniSTS
RH 3.4 Map3176.7RGD
RH 2.0 Map3135.4RGD
Cytogenetic Map3p11UniSTS
D3Got8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,162,379 - 19,162,556 (+)MAPPERmRatBN7.2
Rnor_6.0315,138,020 - 15,138,196NCBIRnor6.0
Rnor_5.0320,448,173 - 20,448,349UniSTSRnor5.0
RGSC_v3.4314,918,355 - 14,918,532RGDRGSC3.4
RGSC_v3.4314,918,356 - 14,918,532UniSTSRGSC3.4
RGSC_v3.1314,814,728 - 14,814,904RGD
Celera313,875,399 - 13,875,575UniSTS
RH 3.4 Map3167.71UniSTS
RH 3.4 Map3167.71RGD
RH 2.0 Map3157.6RGD
Cytogenetic Map3p11UniSTS
BE108128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,127,378 - 19,127,528 (+)MAPPERmRatBN7.2
Rnor_6.0315,101,728 - 15,101,877NCBIRnor6.0
Rnor_5.0320,412,710 - 20,412,859UniSTSRnor5.0
RGSC_v3.4314,881,711 - 14,881,860UniSTSRGSC3.4
Celera313,840,481 - 13,840,630UniSTS
RH 3.4 Map3168.6UniSTS
Cytogenetic Map3p11UniSTS
RH135432  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,248,191 - 19,248,392 (+)MAPPERmRatBN7.2
Rnor_6.0315,224,182 - 15,224,382NCBIRnor6.0
Rnor_5.0320,533,795 - 20,533,995UniSTSRnor5.0
RGSC_v3.4315,006,390 - 15,006,590UniSTSRGSC3.4
Celera313,960,718 - 13,960,918UniSTS
RH 3.4 Map3178.2UniSTS
Cytogenetic Map3p11UniSTS
RH140322  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,110,307 - 19,110,452 (+)MAPPERmRatBN7.2
Rnor_6.0315,084,658 - 15,084,802NCBIRnor6.0
Rnor_5.0320,395,640 - 20,395,784UniSTSRnor5.0
RGSC_v3.4314,864,642 - 14,864,786UniSTSRGSC3.4
Celera313,823,415 - 13,823,559UniSTS
RH 3.4 Map3169.1UniSTS
Cytogenetic Map3p11UniSTS
RH140350  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,333,006 - 19,333,162 (+)MAPPERmRatBN7.2
Rnor_6.0315,309,843 - 15,309,998NCBIRnor6.0
Rnor_5.0320,619,414 - 20,619,569UniSTSRnor5.0
RGSC_v3.4315,093,038 - 15,093,193UniSTSRGSC3.4
Celera314,045,880 - 14,046,035UniSTS
RH 3.4 Map3178.4UniSTS
Cytogenetic Map3p11UniSTS
BF390128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,336,215 - 19,336,374 (+)MAPPERmRatBN7.2
Rnor_6.0315,313,053 - 15,313,211NCBIRnor6.0
Rnor_5.0320,622,624 - 20,622,782UniSTSRnor5.0
RGSC_v3.4315,096,250 - 15,096,408UniSTSRGSC3.4
Celera314,049,087 - 14,049,245UniSTS
RH 3.4 Map3186.71UniSTS
Cytogenetic Map3p11UniSTS
BF390698  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,335,238 - 19,335,389 (+)MAPPERmRatBN7.2
Rnor_6.0315,312,076 - 15,312,226NCBIRnor6.0
Rnor_5.0320,621,647 - 20,621,797UniSTSRnor5.0
RGSC_v3.4315,095,273 - 15,095,423UniSTSRGSC3.4
Celera314,048,110 - 14,048,260UniSTS
RH 3.4 Map3183.3UniSTS
Cytogenetic Map3p11UniSTS
AU049664  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2319,227,157 - 19,227,293 (+)MAPPERmRatBN7.2
Rnor_6.0315,203,132 - 15,203,267NCBIRnor6.0
Rnor_5.0320,513,061 - 20,513,196UniSTSRnor5.0
RGSC_v3.4314,985,503 - 14,985,638UniSTSRGSC3.4
Celera313,940,151 - 13,940,286UniSTS
Cytogenetic Map3p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:75
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000032204
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 21 7
Low 1 17 10 3 8 11 51 22 21 11 8
Below cutoff 1 24 24 18 15 18 2 13 13

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000032204   ⟹   ENSRNOP00000037724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl319,110,284 - 19,335,969 (-)Ensembl
Rnor_6.0 Ensembl315,084,634 - 15,278,645 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118896   ⟹   ENSRNOP00000090192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl319,110,284 - 19,335,969 (-)Ensembl
RefSeq Acc Id: XM_001071863   ⟹   XP_001071863
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2319,109,891 - 19,335,077 (-)NCBI
Rnor_6.0315,084,244 - 15,312,312 (-)NCBI
Rnor_5.0320,395,226 - 20,621,875 (-)NCBI
RGSC_v3.4314,864,228 - 15,095,120 (-)RGD
Sequence:
RefSeq Acc Id: XM_017592136   ⟹   XP_017447625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2319,109,891 - 19,335,077 (-)NCBI
Rnor_6.0315,084,244 - 15,312,312 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592137   ⟹   XP_017447626
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2319,109,891 - 19,335,077 (-)NCBI
Rnor_6.0315,084,244 - 15,312,312 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039106238   ⟹   XP_038962166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2319,159,218 - 19,335,077 (-)NCBI
RefSeq Acc Id: XM_039106239   ⟹   XP_038962167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2319,109,891 - 19,334,506 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_001071863   ⟸   XM_001071863
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017447626   ⟸   XM_017592137
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017447625   ⟸   XM_017592136
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000037724   ⟸   ENSRNOT00000032204
RefSeq Acc Id: XP_038962167   ⟸   XM_039106239
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038962166   ⟸   XM_039106238
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000090192   ⟸   ENSRNOT00000118896

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DFG3-F1-model_v2 AlphaFold B5DFG3 1-509 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588742 AgrOrtholog
BioCyc Gene G2FUF-50027 BioCyc
Ensembl Genes ENSRNOG00000019339 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000037724 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000090192 ENTREZGENE
Ensembl Transcript ENSRNOT00000032204 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000118896 ENTREZGENE
InterPro TTL/TTLL_fam UniProtKB/TrEMBL
NCBI Gene 689746 ENTREZGENE
Pfam TTL UniProtKB/TrEMBL
PhenoGen Ttll11 PhenoGen
PROSITE TTL UniProtKB/TrEMBL
UniProt B5DFG3_RAT UniProtKB/TrEMBL
UniProt Secondary F1LPS9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Ttll11  tubulin tyrosine ligase like11  Ttll11  tubulin tyrosine ligase-like family, member 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Ttll11  tubulin tyrosine ligase-like family, member 11  LOC689746  similar to Tubulin--tyrosine ligase-like protein 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC689746  similar to Tubulin--tyrosine ligase-like protein 11  LOC687848  similar to H23L24.3a  Data Merged 1643240 APPROVED
2006-11-20 LOC687848  similar to H23L24.3a      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC689746  similar to Tubulin--tyrosine ligase-like protein 11      Symbol and Name status set to provisional 70820 PROVISIONAL