Ciz1 (CDKN1A interacting zinc finger protein 1) - Rat Genome Database

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Gene: Ciz1 (CDKN1A interacting zinc finger protein 1) Rattus norvegicus
Analyze
Symbol: Ciz1
Name: CDKN1A interacting zinc finger protein 1
RGD ID: 1305336
Description: Predicted to enable cyclin binding activity. Predicted to act upstream of or within maintenance of protein location in nucleus and positive regulation of DNA-templated DNA replication initiation. Predicted to be located in nucleoplasm and plasma membrane. Predicted to be active in nucleus. Orthologous to human CIZ1 (CDKN1A interacting zinc finger protein 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cip1-interacting zinc finger protein; LOC296639
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,055,753 - 36,071,510 (+)NCBIGRCr8
mRatBN7.2315,658,479 - 15,673,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,658,539 - 15,673,762 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,727,257 - 18,742,576 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,312,251 - 27,327,570 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,563,356 - 25,578,430 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,392,046 - 11,409,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,392,791 - 11,410,180 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,740,917 - 16,758,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,489,384 - 11,506,431 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1311,385,795 - 11,400,843 (+)NCBI
Celera310,401,503 - 10,418,605 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15585571   PMID:17182902   PMID:20215406  


Genomics

Comparative Map Data
Ciz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,055,753 - 36,071,510 (+)NCBIGRCr8
mRatBN7.2315,658,479 - 15,673,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,658,539 - 15,673,762 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,727,257 - 18,742,576 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,312,251 - 27,327,570 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,563,356 - 25,578,430 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,392,046 - 11,409,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,392,791 - 11,410,180 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,740,917 - 16,758,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,489,384 - 11,506,431 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1311,385,795 - 11,400,843 (+)NCBI
Celera310,401,503 - 10,418,605 (+)NCBICelera
Cytogenetic Map3p12NCBI
CIZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,166,065 - 128,204,222 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,161,251 - 128,204,383 (-)EnsemblGRCh38hg38GRCh38
GRCh379130,928,344 - 130,966,501 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,968,165 - 130,006,483 (-)NCBINCBI36Build 36hg18NCBI36
Build 349128,007,897 - 128,046,216NCBI
Celera9101,579,231 - 101,617,558 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,541,979 - 100,580,094 (-)NCBIHuRef
CHM1_19131,079,359 - 131,117,686 (-)NCBICHM1_1
T2T-CHM13v2.09140,373,145 - 140,411,302 (-)NCBIT2T-CHM13v2.0
Ciz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,252,724 - 32,268,311 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,242,339 - 32,270,982 (+)EnsemblGRCm39 Ensembl
GRCm38232,363,007 - 32,378,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,352,327 - 32,380,970 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,218,754 - 32,233,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,185,243 - 32,200,306 (+)NCBIMGSCv36mm8
Celera232,068,474 - 32,083,707 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Ciz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955570707,637 - 732,980 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955570716,124 - 732,551 (-)NCBIChiLan1.0ChiLan1.0
CIZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,148,221 - 11,190,943 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,150,567 - 11,194,438 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,282,821 - 99,325,404 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,956,915 - 127,982,389 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,956,915 - 127,982,449 (-)Ensemblpanpan1.1panPan2
CIZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,303,189 - 55,322,429 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,303,129 - 55,318,945 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,497,971 - 54,517,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,225,176 - 56,244,625 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,225,568 - 56,244,618 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,985,249 - 55,004,481 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,299,972 - 55,319,200 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,391,452 - 55,410,901 (+)NCBIUU_Cfam_GSD_1.0
Ciz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,961,930 - 195,980,047 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648715,728,982 - 15,748,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,617,087 - 268,641,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,618,972 - 268,642,064 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,607,647 - 302,631,544 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,939,984 - 9,961,913 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,940,696 - 9,962,235 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,269,700 - 6,294,051 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ciz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,654,659 - 6,672,237 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,653,710 - 6,672,357 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ciz1
111 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:69
Interacting mature miRNAs:75
Transcripts:ENSRNOT00000037399, ENSRNOT00000064792
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat

Markers in Region
RH139380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,673,549 - 15,673,699 (+)MAPPERmRatBN7.2
Rnor_6.0311,407,052 - 11,407,201NCBIRnor6.0
Rnor_5.0316,755,922 - 16,756,071UniSTSRnor5.0
RGSC_v3.4311,504,265 - 11,504,414UniSTSRGSC3.4
Celera310,416,439 - 10,416,588UniSTS
Cytogenetic Map3p11UniSTS
AI008323  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,674,645 - 15,674,777 (+)MAPPERmRatBN7.2
Rnor_6.0311,408,148 - 11,408,279NCBIRnor6.0
Rnor_5.0316,757,018 - 16,757,149UniSTSRnor5.0
RGSC_v3.4311,505,361 - 11,505,492UniSTSRGSC3.4
Celera310,417,535 - 10,417,666UniSTS
RH 3.4 Map360.7UniSTS
Cytogenetic Map3p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 19 7 12 7 3 72 26 40 10
Low 10 38 34 7 34 8 8 2 9 1 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000037399   ⟹   ENSRNOP00000035313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,658,706 - 15,673,762 (+)Ensembl
Rnor_6.0 Ensembl311,396,070 - 11,410,180 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000064792   ⟹   ENSRNOP00000062979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,658,539 - 15,673,758 (+)Ensembl
Rnor_6.0 Ensembl311,392,791 - 11,408,917 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107806   ⟹   ENSRNOP00000083181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,658,539 - 15,673,758 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109071   ⟹   ENSRNOP00000086913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,658,539 - 15,673,758 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118068   ⟹   ENSRNOP00000095526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl315,658,539 - 15,673,758 (+)Ensembl
RefSeq Acc Id: NM_001399357   ⟹   NP_001386286
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,056,417 - 36,071,510 (+)NCBI
mRatBN7.2315,658,669 - 15,673,762 (+)NCBI
RefSeq Acc Id: NM_001399358   ⟹   NP_001386287
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,056,417 - 36,071,510 (+)NCBI
mRatBN7.2315,658,669 - 15,673,762 (+)NCBI
RefSeq Acc Id: NM_001399359   ⟹   NP_001386288
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,056,417 - 36,071,510 (+)NCBI
mRatBN7.2315,658,669 - 15,673,762 (+)NCBI
RefSeq Acc Id: XM_006233940   ⟹   XP_006234002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,056,355 - 36,071,510 (+)NCBI
mRatBN7.2315,658,636 - 15,673,762 (+)NCBI
Rnor_6.0311,392,138 - 11,407,264 (+)NCBI
Rnor_5.0316,740,917 - 16,758,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233941   ⟹   XP_006234003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
mRatBN7.2315,658,479 - 15,673,762 (+)NCBI
Rnor_6.0311,392,048 - 11,407,264 (+)NCBI
Rnor_5.0316,740,917 - 16,758,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233943   ⟹   XP_006234005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
mRatBN7.2315,658,479 - 15,673,762 (+)NCBI
Rnor_6.0311,392,046 - 11,407,264 (+)NCBI
Rnor_5.0316,740,917 - 16,758,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761715   ⟹   XP_008759937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,056,384 - 36,071,510 (+)NCBI
mRatBN7.2315,658,636 - 15,673,762 (+)NCBI
Rnor_6.0311,392,286 - 11,407,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761719   ⟹   XP_008759941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
mRatBN7.2315,658,636 - 15,673,762 (+)NCBI
Rnor_6.0311,392,287 - 11,407,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063283494   ⟹   XP_063139564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283496   ⟹   XP_063139566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283497   ⟹   XP_063139567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283498   ⟹   XP_063139568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,056,384 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283499   ⟹   XP_063139569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283500   ⟹   XP_063139570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283501   ⟹   XP_063139571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283502   ⟹   XP_063139572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283503   ⟹   XP_063139573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,071,510 (+)NCBI
RefSeq Acc Id: XM_063283504   ⟹   XP_063139574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,055,753 - 36,066,310 (+)NCBI
RefSeq Acc Id: XP_006234005   ⟸   XM_006233943
- Peptide Label: isoform X2
- UniProtKB: A6JU56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234003   ⟸   XM_006233941
- Peptide Label: isoform X1
- UniProtKB: F1LV60 (UniProtKB/TrEMBL),   A6JU56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234002   ⟸   XM_006233940
- Peptide Label: isoform X1
- UniProtKB: F1LV60 (UniProtKB/TrEMBL),   A6JU56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759937   ⟸   XM_008761715
- Peptide Label: isoform X2
- UniProtKB: A6JU56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759941   ⟸   XM_008761719
- Peptide Label: isoform X6
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000035313   ⟸   ENSRNOT00000037399
RefSeq Acc Id: ENSRNOP00000062979   ⟸   ENSRNOT00000064792
RefSeq Acc Id: ENSRNOP00000083181   ⟸   ENSRNOT00000107806
RefSeq Acc Id: ENSRNOP00000095526   ⟸   ENSRNOT00000118068
RefSeq Acc Id: ENSRNOP00000086913   ⟸   ENSRNOT00000109071
RefSeq Acc Id: NP_001386286   ⟸   NM_001399357
- Peptide Label: isoform 1
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL),   F1LS75 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386287   ⟸   NM_001399358
- Peptide Label: isoform 2
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL),   A0A8I6AJV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386288   ⟸   NM_001399359
- Peptide Label: isoform 3
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139564   ⟸   XM_063283494
- Peptide Label: isoform X3
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL),   F1LS75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139566   ⟸   XM_063283496
- Peptide Label: isoform X4
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL),   A0A8I6AJV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139567   ⟸   XM_063283497
- Peptide Label: isoform X5
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139569   ⟸   XM_063283499
- Peptide Label: isoform X6
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139570   ⟸   XM_063283500
- Peptide Label: isoform X7
- UniProtKB: A6JU56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139571   ⟸   XM_063283501
- Peptide Label: isoform X8
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139572   ⟸   XM_063283502
- Peptide Label: isoform X9
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139573   ⟸   XM_063283503
- Peptide Label: isoform X10
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139574   ⟸   XM_063283504
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063139568   ⟸   XM_063283498
- Peptide Label: isoform X5
- UniProtKB: B2RYH1 (UniProtKB/TrEMBL)
Protein Domains
Matrin-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LV60-F1-model_v2 AlphaFold F1LV60 1-825 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691983
Promoter ID:EPDNEW_R2508
Type:single initiation site
Name:Ciz1_1
Description:CDKN1A interacting zinc finger protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0311,396,205 - 11,396,265EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305336 AgrOrtholog
BioCyc Gene G2FUF-50143 BioCyc
Ensembl Genes ENSRNOG00000013442 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037399 ENTREZGENE
  ENSRNOT00000037399.7 UniProtKB/TrEMBL
  ENSRNOT00000064792.5 UniProtKB/TrEMBL
  ENSRNOT00000107806.1 UniProtKB/TrEMBL
  ENSRNOT00000109071.1 UniProtKB/TrEMBL
  ENSRNOT00000118068 ENTREZGENE
  ENSRNOT00000118068.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7934431 IMAGE-MGC_LOAD
InterPro CIZ1 UniProtKB/TrEMBL
  Znf_C2H2_jaz UniProtKB/TrEMBL
  Znf_C2H2_matrin UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  Znf_U1 UniProtKB/TrEMBL
KEGG Report rno:296639 UniProtKB/TrEMBL
MGC_CLONE MGC:188554 IMAGE-MGC_LOAD
NCBI Gene 296639 ENTREZGENE
PANTHER CIP1-INTERACTING ZINC FINGER PROTEIN UniProtKB/TrEMBL
  PTHR15491 UniProtKB/TrEMBL
Pfam zf-C2H2_jaz UniProtKB/TrEMBL
PhenoGen Ciz1 PhenoGen
PROSITE ZF_MATRIN UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013442 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZW18_RAT UniProtKB/TrEMBL
  A0A8I6A6S9_RAT UniProtKB/TrEMBL
  A0A8I6AJV2 ENTREZGENE, UniProtKB/TrEMBL
  A6JU56 ENTREZGENE, UniProtKB/TrEMBL
  B2RYH1 ENTREZGENE, UniProtKB/TrEMBL
  F1LS75 ENTREZGENE, UniProtKB/TrEMBL
  F1LV60 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ciz1  CDKN1A interacting zinc finger protein 1   Ciz1_predicted  CDKN1A interacting zinc finger protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ciz1_predicted  CDKN1A interacting zinc finger protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED