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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription coregulator binding
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Accession:GO:0001221 term browser browse the term
Definition:Binding to a transcription coregulator, a protein involved in regulation of transcription via protein-protein interactions with transcription factors and other transcription regulatory proteins. Cofactors do not bind DNA directly, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery.
Synonyms:related_synonym: RNA polymerase II transcription cofactor binding;   RNA polymerase II transcription coregulator binding;   transcription cofactor binding
 alt_id: GO:0001224


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transcription coregulator binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap2 BAR/IMD domain containing adaptor protein 2 IPI RGD PMID:10332026 RGD:9684992 NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134 		JBrowse link
G Cbx3 chromobox 3 enables ISO UniProtKB:Q9H2P0 (PMID:29795351) RGD PMID:29795351 NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 enables ISO UniProtKB:Q9H2P0 (PMID:29795351) RGD PMID:29795351 NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541 		JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 enables ISO
IEA		 UniProtKB:O54968 (PMID:16314513)
GO_REF:0000107		 RGD
Ensembl		 PMID:16314513 GO_REF:0000107 NCBI chr 3:149,596,509...149,757,765
Ensembl chr 3:149,596,509...149,757,755 		JBrowse link
G Creb3 cAMP responsive element binding protein 3 enables ISO UniProtKB:G5EC23 (PMID:11711630) RGD PMID:11711630 NCBI chr 5:57,817,865...57,823,233
Ensembl chr 5:57,817,832...57,824,390 		JBrowse link
G Ctbp1 C-terminal binding protein 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:77,455,580...77,482,821
Ensembl chr14:77,455,696...77,482,821 		JBrowse link
G Ctbp2 C-terminal binding protein 2 enables ISO
IBA		 UniProtKB:Q8WW38 (MGI:1342875|PMID:10438528)
GO_REF:0000033		 RGD
GO_Central		 PMID:10438528 GO_REF:0000033 MGI:1342875 NCBI chr 1:187,782,064...187,918,115
Ensembl chr 1:187,782,682...187,920,222 		JBrowse link
G Ctcf CCCTC-binding factor enables ISO
IEA		 UniProtKB:Q9UFW8 (PMID:31547883)
GO_REF:0000107		 RGD
Ensembl		 PMID:31547883 GO_REF:0000107 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123 		JBrowse link
G Ctnnb1 catenin beta 1 enables ISO UniProtKB:Q9UBL3 (MGI:5428344|PMID:22723415) RGD PMID:22723415 MGI:5428344 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ep300 E1A binding protein p300 enables IPI
ISO		 UniProtKB:Q92831 (PMID:8684459) RGD PMID:8684459 PMID:15598887 RGD:1581923 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Esr1 estrogen receptor 1 enables ISO UniProtKB:Q6STE5 (PMID:14701856) RGD PMID:14701856 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit enables ISO UniProtKB:P35639 (PMID:10523647) RGD PMID:10523647 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Foxo3 forkhead box O3 IPI Ep300 RGD PMID:22292478 RGD:7349318 NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561 		JBrowse link
G Foxp1 forkhead box P1 enables ISO UniProtKB:O88712 (MGI:3606794|PMID:14701752) RGD PMID:14701752 MGI:3606794 NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258 		JBrowse link
G Foxp2 forkhead box P2 enables ISO UniProtKB:O88712 (MGI:3606794|PMID:14701752) RGD PMID:14701752 MGI:3606794 NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683 		JBrowse link
G Gata1 GATA binding protein 1 enables ISO UniProtKB:Q8IX07 (PMID:12483298)
UniProtKB:Q8WW38 (MGI:1342875|PMID:10438528)		 RGD PMID:10438528 PMID:12483298 MGI:1342875 NCBI chr  X:14,529,706...14,537,530
Ensembl chr  X:14,529,702...14,537,530 		JBrowse link
G Gata2 GATA binding protein 2 enables ISO UniProtKB:Q8IX07 (PMID:12483298) RGD PMID:12483298 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 enables ISO UniProtKB:O70433 (MGI:3511603|PMID:15509787) RGD PMID:15509787 MGI:3511603 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hmga1 high mobility group AT-hook 1 enables ISO
ISS		 (PMID:10428834)
GO_REF:0000024		 RGD
UniProt		 PMID:10428834 GO_REF:0000024 NCBI chr20:5,611,088...5,618,755
Ensembl chr20:5,611,694...5,618,752 		JBrowse link
G Hnf1a HNF1 homeobox A IPI RGD PMID:15598887 RGD:1581923 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Hnf1b HNF1 homeobox B enables ISO UniProtKB:Q13547|UniProtKB:Q92793|UniProtKB:Q92831 (PMID:15509593) RGD PMID:15509593 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha enables IPI PMID:19651776 BHF-UCL PMID:19651776 RGD:8553501 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit enables ISO
IEA		 UniProtKB:P35639 (MGI:5616331|PMID:10523647)
GO_REF:0000107		 RGD
Ensembl		 PMID:10523647 GO_REF:0000107 MGI:5616331 NCBI chr16:18,734,121...18,735,799
Ensembl chr16:18,734,122...18,735,799 		JBrowse link
G Klf4 KLF transcription factor 4 IPI RGD PMID:21252119 RGD:7364714 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Lhx3 LIM homeobox 3 enables ISO UniProtKB:P61969 (MGI:7339313|PMID:18539116) RGD PMID:18539116 MGI:7339313 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Lmo2 LIM domain only 2 enables ISO UniProtKB:Q86U70 (PMID:16314316) RGD PMID:16314316 NCBI chr 3:90,355,234...90,377,970
Ensembl chr 3:90,365,883...90,377,953 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor enables ISO UniProtKB:P19338|UniProtKB:Q09472|UniProtKB:Q53GL7|UniProtKB:Q92793 (PMID:15674325) RGD PMID:15674325 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 enables IPI PMID:16314513 UniProt PMID:16314513 RGD:8655528 NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737 		JBrowse link
G Nfya nuclear transcription factor Y subunit alpha IPI RGD PMID:21164521 RGD:7364726 NCBI chr 9:12,587,437...12,613,911
Ensembl chr 9:12,586,259...12,613,898 		JBrowse link
G Nkx2-1 NK2 homeobox 1 IPI RGD PMID:11438542 RGD:634482 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 enables ISO
IEA		 UniProtKB:Q6STE5 (PMID:14701856)
GO_REF:0000107		 RGD
Ensembl		 PMID:14701856 GO_REF:0000107 NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047 		JBrowse link
G Nr5a1 nuclear receptor subfamily 5, group A, member 1 enables ISO UniProtKB:Q6STE5 (PMID:14701856) RGD PMID:14701856 NCBI chr 3:22,464,786...22,486,328
Ensembl chr 3:22,465,502...22,486,328 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 enables ISO UniProtKB:Q6STE5 (PMID:14701856) RGD PMID:14701856 NCBI chr13:48,313,634...48,433,494
Ensembl chr13:48,316,301...48,433,326 		JBrowse link
G Pax3 paired box 3 enables ISO UniProtKB:P54198 (MGI:6436964|PMID:9731536) RGD PMID:9731536 MGI:6436964 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
G Pax6 paired box 6 enables ISO
IEA		 UniProtKB:Q9QZR5 (MGI:5306308|PMID:16407227)
GO_REF:0000107		 RGD
Ensembl		 PMID:16407227 GO_REF:0000107 MGI:5306308 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pbx1 PBX homeobox 1 enables ISO UniProtKB:Q6STE5 (PMID:14701856) RGD PMID:14701856 NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma enables ISO UniProtKB:Q6STE5 (PMID:14701856) RGD PMID:14701856 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Rora RAR-related orphan receptor A enables ISO UniProtKB:Q6STE5 (PMID:14701856) RGD PMID:14701856 NCBI chr 8:69,301,635...70,034,741
Ensembl chr 8:69,301,733...70,025,931 		JBrowse link
G Rxra retinoid X receptor alpha enables ISO
IEA		 UniProtKB:Q6STE5 (PMID:14701856)
GO_REF:0000107		 RGD
Ensembl		 PMID:14701856 GO_REF:0000107 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 enables IEA
ISO		 GO_REF:0000107
UniProtKB:Q12824|UniProtKB:Q6STE5 (PMID:14701856), (PMID:22368283)		 Ensembl
RGD		 PMID:14701856 PMID:22368283 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 enables ISO UniProtKB:P51532 (PMID:14701856) RGD PMID:14701856 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Sp1 Sp1 transcription factor enables IPI
ISO		 PMID:10362258
UniProtKB:Q92908 (PMID:14988427)		 RGD PMID:14988427 PMID:10362258 RGD:13506263 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 enables ISO UniProtKB:Q6STE5 (PMID:14701856) RGD PMID:14701856 NCBI chr10:45,007,637...45,029,650
Ensembl chr10:45,007,637...45,029,650 		JBrowse link
G Tp53 tumor protein p53 IPI RGD PMID:21792911 RGD:7349387 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 enables ISO UniProtKB:O70343 (MGI:3843109|PMID:19345188) RGD PMID:19345188 MGI:3843109 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Ube2i ubiquitin-conjugating enzyme E2I enables ISO UniProtKB:O14776 (PMID:20215116) RGD PMID:20215116 NCBI chr10:14,277,749...14,294,681
Ensembl chr10:69,701,618...69,702,443
Ensembl chr10:69,701,618...69,702,443 		JBrowse link
G Zfp618 zinc finger protein 618 enables ISO UniProtKB:Q96PU4 (PMID:27129234) RGD PMID:27129234 NCBI chr 5:76,398,514...76,564,837
Ensembl chr 5:76,398,366...76,564,834 		JBrowse link
transcription coactivator binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor enables ISO
IEA		 UniProtKB:Q15596|UniProtKB:Q15788 (PMID:15641800)
GO_REF:0000107		 RGD
Ensembl		 PMID:15641800 GO_REF:0000107 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Ar androgen receptor enables IEA
ISO		 GO_REF:0000107
UniProtKB:P82094 (PMID:10428808)		 Ensembl
RGD		 PMID:10428808 GO_REF:0000107 NCBI chr  X:63,104,771...63,273,934
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
G Atf7 activating transcription factor 7 enables ISO (PMID:17264123) RGD PMID:17264123 NCBI chr 7:133,660,491...133,750,902
Ensembl chr 7:133,663,294...133,750,848 		JBrowse link
G Ccnt2 cyclin T2 enables ISO UniProtKB:P06400 (PMID:12037672) RGD PMID:12037672 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 enables ISO
IEA		 UniProtKB:P06400 (PMID:12037672)
GO_REF:0000107		 RGD
Ensembl		 PMID:12037672 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Cit citron rho-interacting serine/threonine kinase enables ISO
IEA		 UniProtKB:P46937 (PMID:30865227)
GO_REF:0000107		 RGD
Ensembl		 PMID:30865227 GO_REF:0000107 NCBI chr12:40,603,073...40,764,846
Ensembl chr12:40,605,563...40,763,860 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 enables IPI PMID:9413984 CAFA PMID:9413984 RGD:12793055 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Crebbp CREB binding protein enables IPI
ISO
IEA		 UniProtKB:Q96PN7 (PMID:11349124)
GO_REF:0000107		 RGD
Ensembl		 PMID:11349124 PMID:15598887 GO_REF:0000107, RGD:1581923 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Ep300 E1A binding protein p300 enables ISO UniProtKB:Q96PN7 (PMID:11349124)
UniProtKB:Q71SY5 (MGI:5297783|PMID:17641689)		 RGD PMID:11349124 PMID:17641689 MGI:5297783 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Epas1 endothelial PAS domain protein 1 enables ISO
IEA		 UniProtKB:Q09472 (PMID:15261140)
GO_REF:0000107		 RGD
Ensembl		 PMID:15261140 GO_REF:0000107 NCBI chr 6:7,790,236...7,871,717
Ensembl chr 6:7,790,647...7,871,228 		JBrowse link
G Esr1 estrogen receptor 1 enables IPI
ISO
IEA		 UniProtKB:Q969T9 (PMID:21642474)
GO_REF:0000107		 RGD
Ensembl		 PMID:21642474 PMID:18511507 GO_REF:0000107, RGD:4781450 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Flywch1 FLYWCH-type zinc finger 1 enables ISO UniProtKB:P35222 (PMID:30097457) RGD PMID:30097457 NCBI chr10:12,774,644...12,794,373
Ensembl chr10:12,774,653...12,794,267 		JBrowse link
G Foxo1 forkhead box O1 IPI RGD PMID:19273580 RGD:10059650 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
G Gata1 GATA binding protein 1 enables ISO UniProtKB:Q925J9 (MGI:2158098|PMID:11724781) RGD PMID:11724781 MGI:2158098 NCBI chr  X:14,529,706...14,537,530
Ensembl chr  X:14,529,702...14,537,530 		JBrowse link
G Gata2 GATA binding protein 2 enables ISO UniProtKB:Q925J9 (MGI:2158098|PMID:11724781) RGD PMID:11724781 MGI:2158098 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gata3 GATA binding protein 3 enables ISO UniProtKB:Q925J9 (MGI:2158098|PMID:11724781) RGD PMID:11724781 MGI:2158098 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gata4 GATA binding protein 4 enables ISO UniProtKB:Q925J9 (MGI:2158098|PMID:11724781) RGD PMID:11724781 MGI:2158098 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Gata6 GATA binding protein 6 enables ISO
IEA		 UniProtKB:Q15648 (PMID:19497978)
GO_REF:0000107
UniProtKB:Q925J9 (MGI:2158098|PMID:11724781)		 RGD
Ensembl		 PMID:11724781 PMID:19497978 GO_REF:0000107 MGI:2158098 NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 enables IPI PMID:11994297 BHF-UCL PMID:11994297 RGD:727369 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha enables ISO
ISS
IEA		 UniProtKB:Q09472 (PMID:15261140)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:15261140 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hnf1a HNF1 homeobox A IPI RGD PMID:15598887 RGD:1581923 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Lhx3 LIM homeobox 3 enables ISO UniProtKB:P70662 (MGI:7339313|PMID:18539116) RGD PMID:18539116 MGI:7339313 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 IPI RGD PMID:27956576 RGD:155791649 NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597 		JBrowse link
G Med1 mediator complex subunit 1 enables ISO UniProtKB:Q71SY5 (PMID:17641689) RGD PMID:17641689 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Med25 mediator complex subunit 25 enables ISO UniProtKB:B2RWS6|UniProtKB:Q15648 (PMID:17641689) RGD PMID:17641689 NCBI chr 1:95,359,961...95,375,827
Ensembl chr 1:95,360,284...95,375,877 		JBrowse link
G Med6 mediator complex subunit 6 enables ISO UniProtKB:Q71SY5 (PMID:17641689) RGD PMID:17641689 NCBI chr 6:101,270,410...101,283,929
Ensembl chr 6:101,270,410...101,283,876 		JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 IPI RGD PMID:22566696 RGD:7327214 NCBI chr18:74,046,422...74,156,041
Ensembl chr18:74,046,904...74,156,028 		JBrowse link
G Nr3c2 nuclear receptor subfamily 3, group C, member 2 IPI RGD PMID:10847590 RGD:152975666 NCBI chr19:30,715,634...31,059,885
Ensembl chr19:30,715,648...31,059,885 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 enables ISO UniProtKB:O09000|UniProtKB:P70365|UniProtKB:Q61026|UniProtKB:Q925J9 (MGI:5645210|PMID:12709428) RGD PMID:12709428 MGI:5645210 NCBI chr 5:62,361,588...62,401,489
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Pgr progesterone receptor enables IEA
ISO		 GO_REF:0000107
UniProtKB:Q96PN7 (PMID:17015480)		 Ensembl
RGD		 PMID:17015480 GO_REF:0000107 NCBI chr 8:6,072,673...6,131,552
Ensembl chr 8:6,072,673...6,131,344 		JBrowse link
G Ppara peroxisome proliferator activated receptor alpha IPI RGD PMID:22464285 RGD:10059644 NCBI chr 7:116,832,405...116,900,878
Ensembl chr 7:116,832,756...116,895,346 		JBrowse link
G Ppard peroxisome proliferator-activated receptor delta enables ISO UniProtKB:Q61026 (PMID:15001550) RGD PMID:15001550 NCBI chr20:6,298,785...6,363,970
Ensembl chr20:6,298,785...6,363,968 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IPI RGD PMID:10037764 RGD:5134969 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Rara retinoic acid receptor, alpha enables ISO UniProtKB:Q71SY5 (PMID:17641689)
UniProtKB:Q71SY5 (MGI:5297783|PMID:17641689)		 RGD PMID:17641689 MGI:5297783 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit enables ISO UniProtKB:Q09472 (PMID:23811396) RGD PMID:23811396 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484 		JBrowse link
G Rora RAR-related orphan receptor A enables ISO UniProtKB:Q09472|UniProtKB:Q15596|UniProtKB:Q15648 (PMID:10478845), (PMID:9862959)
UniProtKB:O70343|UniProtKB:Q61026 (MGI:3715412|PMID:17476214), (MGI:3820385|PMID:19039140)		 RGD PMID:9862959 PMID:10478845 PMID:17476214 PMID:19039140 MGI:3715412 MGI:3820385 NCBI chr 8:69,301,635...70,034,741
Ensembl chr 8:69,301,733...70,025,931 		JBrowse link
G Rorc RAR-related orphan receptor C enables ISO UniProtKB:O70343|UniProtKB:P70365|UniProtKB:Q61026 (MGI:3694879|PMID:16148126), (MGI:3715412|PMID:17476214) RGD PMID:16148126 PMID:17476214 MGI:3694879 MGI:3715412 NCBI chr 2:182,009,707...182,034,910
Ensembl chr 2:182,009,286...182,034,907 		JBrowse link
G Rpl23 ribosomal protein L23 enables ISO
IEA		 UniProtKB:P06748 (PMID:19160485)
GO_REF:0000107		 RGD
Ensembl		 PMID:19160485 GO_REF:0000107 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870 		JBrowse link
G Runx1 RUNX family transcription factor 1 enables ISO UniProtKB:Q92794|UniProtKB:Q9H7Z6 (PMID:11742995) RGD PMID:11742995 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Rxra retinoid X receptor alpha enables ISO UniProtKB:Q71SY5 (MGI:5297783|PMID:17641689) RGD PMID:17641689 MGI:5297783 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712 		JBrowse link
G Six1 SIX homeobox 1 IPI RGD PMID:26499333 PMID:22197309 RGD:11536910, RGD:11561984 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Smad3 SMAD family member 3 enables ISO UniProtKB:Q9ULJ6 (PMID:16777850) RGD PMID:16777850 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smad4 SMAD family member 4 enables ISO
IEA		 UniProtKB:Q9ULJ6 (PMID:16777850)
GO_REF:0000107		 RGD
Ensembl		 PMID:16777850 GO_REF:0000107 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 enables ISO UniProtKB:Q8TEK3-2 (PMID:22002246) RGD PMID:22002246 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Stat6 signal transducer and activator of transcription 6 enables ISO (PMID:29203888) RGD PMID:29203888 NCBI chr 7:63,480,229...63,497,551
Ensembl chr 7:63,479,642...63,498,495 		JBrowse link
G Tead2 TEA domain transcription factor 2 enables ISO UniProtKB:P46937 (PMID:20368466) RGD PMID:20368466 NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186 		JBrowse link
G Tert telomerase reverse transcriptase enables ISO UniProtKB:P51532 (PMID:19571879)
UniProtKB:Q3TKT4 (MGI:3850567|PMID:19571879)		 RGD PMID:19571879 MGI:3850567 NCBI chr 1:29,637,213...29,659,561
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
G Tfam transcription factor A, mitochondrial IPI RGD PMID:23297307 RGD:10059660 NCBI chr20:17,356,243...17,368,293
Ensembl chr20:17,356,197...17,368,292 		JBrowse link
G Thrb thyroid hormone receptor beta enables ISO
IEA		 UniProtKB:Q9H0E9 (PMID:9368056)
GO_REF:0000107		 RGD
Ensembl		 PMID:9368056 GO_REF:0000107 NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Trerf1 transcriptional regulating factor 1 enables ISO UniProtKB:Q09472|UniProtKB:Q92793 (PMID:11349124) RGD PMID:11349124 NCBI chr 9:13,631,619...13,858,326
Ensembl chr 9:13,634,126...13,857,029 		JBrowse link
G Vgll4 vestigial-like family member 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:147,925,630...148,038,519
Ensembl chr 4:147,927,034...148,038,471 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 enables ISO UniProtKB:P06748 (PMID:19160485) RGD PMID:19160485 NCBI chr 5:153,753,508...153,774,613
Ensembl chr 5:153,753,569...153,774,609 		JBrowse link
G Zbtb49 zinc finger and BTB domain containing 49 enables ISO UniProtKB:Q09472|UniProtKB:Q92993 (PMID:25245946) RGD PMID:25245946 NCBI chr14:72,590,692...72,612,404
Ensembl chr14:72,590,708...72,612,404 		JBrowse link
G Zbtb8a zinc finger and BTB domain containing 8a enables ISO
IEA		 UniProtKB:Q09472 (PMID:23329847)
GO_REF:0000107		 RGD
Ensembl		 PMID:23329847 GO_REF:0000107 NCBI chr 5:141,693,189...141,721,464
Ensembl chr 5:141,693,189...141,721,344 		JBrowse link
transcription corepressor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 IPI RGD PMID:17079677 RGD:5688291 NCBI chr 6:121,072,228...121,107,902
Ensembl chr 6:121,074,448...121,107,902 		JBrowse link
G Bcl6 BCL6, transcription repressor enables ISO UniProtKB:Q6W2J9 (PMID:10898795) RGD PMID:10898795 NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389 		JBrowse link
G Bsn bassoon (presynaptic cytomatrix protein) enables IPI PMID:25652077 ParkinsonsUK-UCL PMID:25652077 RGD:11079187 NCBI chr 8:108,784,849...108,875,819
Ensembl chr 8:108,788,542...108,875,819 		JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone IPI protein C-terminus binding RGD PMID:8945638 RGD:9698454 NCBI chr 8:19,677,400...19,690,761
Ensembl chr 8:19,671,938...19,690,809 		JBrowse link
G Cdc5l cell division cycle 5-like IPI RGD PMID:20629186 RGD:10045890 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450 		JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 enables ISO (PMID:16712523) RGD PMID:16712523 NCBI chr 7:52,130,445...52,222,338
Ensembl chr 7:52,130,441...52,223,575 		JBrowse link
G Ctbp1 C-terminal binding protein 1 enables ISO
IEA		 UniProtKB:Q96JN0 (PMID:29628311)
GO_REF:0000107		 RGD
Ensembl		 PMID:29628311 GO_REF:0000107 NCBI chr14:77,455,580...77,482,821
Ensembl chr14:77,455,696...77,482,821 		JBrowse link
G Ctbp2 C-terminal binding protein 2 enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr 1:187,782,064...187,918,115
Ensembl chr 1:187,782,682...187,920,222 		JBrowse link
G Ctnnb1 catenin beta 1 enables IEA
ISO		 GO_REF:0000107
UniProtKB:Q4VC44 (PMID:30097457)		 Ensembl
RGD		 PMID:30097457 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Eed embryonic ectoderm development enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974 		JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Elob elongin B enables ISO UniProtKB:P40337 (PMID:7660122) RGD PMID:7660122 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Eloc elongin C enables ISO UniProtKB:P40337 (PMID:7660122) RGD PMID:7660122 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890 		JBrowse link
G Eno1 enolase 1 enables ISO UniProtKB:P0DI82 (PMID:11134351) RGD PMID:11134351 NCBI chr 5:160,719,951...160,731,337
Ensembl chr 5:160,719,951...160,731,336 		JBrowse link
G Esr1 estrogen receptor 1 enables ISO
IEA		 UniProtKB:Q96JN0 (PMID:12535528)
GO_REF:0000107		 RGD
Ensembl		 PMID:12535528 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor enables ISO
IEA		 (PMID:10698492)
GO_REF:0000107		 RGD
Ensembl		 PMID:10698492 GO_REF:0000107 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO UniProtKB:Q8N3X6|UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Fam89b family with sequence similarity 89, member B enables ISO
IBA		 (MGI:5486566|PMID:12646588)
GO_REF:0000033		 RGD
GO_Central		 PMID:12646588 GO_REF:0000033 MGI:5486566 NCBI chr 1:203,015,772...203,017,890
Ensembl chr 1:203,015,773...203,017,367 		JBrowse link
G Hdac1 histone deacetylase 1 enables ISO UniProtKB:Q6W2J9 (PMID:10898795) RGD PMID:10898795 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 enables ISO UniProtKB:Q9JJY4 (MGI:2178490|PMID:12007404) RGD PMID:12007404 MGI:2178490 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hdac3 histone deacetylase 3 enables ISO
IPI		 UniProtKB:Q6W2J9|UniProtKB:Q96JN0 (PMID:10898795), (PMID:12535528) RGD PMID:10898795 PMID:12535528 PMID:17079677 RGD:5688291 NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856 		JBrowse link
G Hdac5 histone deacetylase 5 enables ISO UniProtKB:Q9JJY4 (MGI:2178490|PMID:12007404)
UniProtKB:Q6W2J9 (PMID:10898795)		 RGD PMID:10898795 PMID:12007404 MGI:2178490 NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235 		JBrowse link
G Hdac6 histone deacetylase 6 enables ISO UniProtKB:Q96JN0 (PMID:12535528) RGD PMID:12535528 NCBI chr  X:14,550,645...14,572,445
Ensembl chr  X:14,551,044...14,572,441 		JBrowse link
G Hdgf heparin binding growth factor enables ISO UniProtKB:Q13363 (PMID:19162039) RGD PMID:19162039 NCBI chr 2:173,370,147...173,379,756
Ensembl chr 2:173,370,465...173,379,747 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 enables IPI PMID:8687460 UniProt PMID:8687460 RGD:8553567 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha IPI RGD PMID:12205093 RGD:152995266 NCBI chr 3:152,186,787...152,248,320
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
G Lcor ligand dependent nuclear receptor corepressor enables ISO UniProtKB:P56545|UniProtKB:Q13363 (PMID:29628311) RGD PMID:29628311 NCBI chr 1:240,298,565...240,405,627
Ensembl chr 1:240,298,563...240,402,448 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 enables ISO
IEA		 UniProtKB:Q04724 (PMID:9751710)
GO_REF:0000107		 RGD
Ensembl		 PMID:9751710 GO_REF:0000107 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524 		JBrowse link
G Nek6 NIMA-related kinase 6 enables ISO
IEA		 UniProtKB:Q86X95 (PMID:20873783)
GO_REF:0000107		 RGD
Ensembl		 PMID:20873783 GO_REF:0000107 NCBI chr 3:22,284,269...22,356,302
Ensembl chr 3:22,284,279...22,395,990 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 enables IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:15761026), (PMID:18006707)		 Ensembl
UniProt
RGD		 PMID:15761026 PMID:18006707 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,728,348...83,735,562
Ensembl chr10:83,728,318...83,735,705 		JBrowse link
G Pbx1 PBX homeobox 1 enables ISO UniProtKB:Q96AQ6 (PMID:10825160) RGD PMID:10825160 NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) enables IPI PMID:25652077 ParkinsonsUK-UCL PMID:25652077 RGD:11079187 NCBI chr 4:19,691,439...20,050,015
Ensembl chr 4:19,695,315...20,049,885 		JBrowse link
G Per1 period circadian regulator 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:53,800,126...53,814,963
Ensembl chr10:53,805,535...53,814,431 		JBrowse link
G Per2 period circadian regulator 2 enables ISO
IBA		 UniProtKB:Q62318 (MGI:5569417|PMID:24413057)
GO_REF:0000033		 RGD
GO_Central		 PMID:24413057 GO_REF:0000033 MGI:5569417 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Per3 period circadian regulator 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:161,460,228...161,495,404
Ensembl chr 5:161,459,533...161,495,607 		JBrowse link
G Phf1 PHD finger protein 1 enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr20:5,017,765...5,022,872
Ensembl chr20:5,017,893...5,022,871 		JBrowse link
G Phf12 PHD finger protein 12 enables ISO PR:Q60520 (PMID:11390640) RGD PMID:11390640 NCBI chr10:62,871,309...62,919,026
Ensembl chr10:62,872,195...62,919,000 		JBrowse link
G Rora RAR-related orphan receptor A enables ISO UniProtKB:O75376 (PMID:9328355) RGD PMID:9328355 NCBI chr 8:69,301,635...70,034,741
Ensembl chr 8:69,301,733...70,025,931 		JBrowse link
G Runx1 RUNX family transcription factor 1 enables ISO UniProtKB:P16371|UniProtKB:Q04724 (PMID:9751710) RGD PMID:9751710 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Runx3 RUNX family transcription factor 3 enables ISO UniProtKB:Q04724 (PMID:9751710) RGD PMID:9751710 NCBI chr 5:147,360,587...147,419,161
Ensembl chr 5:147,360,994...147,419,156 		JBrowse link
G Six3 SIX homeobox 3 enables ISO UniProtKB:Q04724|UniProtKB:Q08117|UniProtKB:Q709D5 (PMID:12441302), (PMID:14973488)
UniProtKB:Q8K4B0 (MGI:3718714|PMID:17666527)		 RGD PMID:12441302 PMID:14973488 PMID:17666527 MGI:3718714 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Smad3 SMAD family member 3 enables ISO UniProtKB:Q8N6I1 (PMID:14612439) RGD PMID:14612439 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smad4 SMAD family member 4 enables ISO
IEA		 UniProtKB:Q8N6I1 (PMID:14612439)
GO_REF:0000107		 RGD
Ensembl		 PMID:14612439 GO_REF:0000107 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 enables ISO UniProtKB:Q9UIV1 (PMID:23386060) RGD PMID:23386060 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Stk36 serine/threonine kinase 36 enables ISO (PMID:10806483) RGD PMID:10806483 NCBI chr 9:76,176,922...76,204,423
Ensembl chr 9:76,176,920...76,204,422 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738 		JBrowse link
G Thap7 THAP domain containing 7 enables ISO (PMID:15561719) RGD PMID:15561719 NCBI chr11:83,482,958...83,486,136
Ensembl chr11:83,483,037...83,486,436 		JBrowse link
G Tp73 tumor protein p73 enables ISO UniProtKB:P09429 (PMID:11748232) RGD PMID:11748232 NCBI chr 5:164,621,377...164,703,958
Ensembl chr 5:164,621,377...164,681,128 		JBrowse link
G Trappc2 trafficking protein particle complex subunit 2 enables ISO UniProtKB:P06733 (PMID:11134351) RGD PMID:11134351 NCBI chr  X:28,004,051...28,015,336
Ensembl chr  X:27,994,054...28,015,346 		JBrowse link
G Usp11 ubiquitin specific peptidase 11 enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr  X:1,473,349...1,489,520
Ensembl chr  X:1,473,350...1,489,520 		JBrowse link
G Wiz WIZ zinc finger enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr 7:11,366,837...11,395,279
Ensembl chr 7:11,367,035...11,395,490 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 enables ISO UniProtKB:Q06455 (PMID:10688654) RGD PMID:10688654 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a enables ISO
ISS
IEA		 UniProtKB:O75376|UniProtKB:Q9Y618 (PMID:20812024)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:20812024 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:8,561,015...8,578,243
Ensembl chr 7:8,563,779...8,576,539 		JBrowse link
G Zfp568 zinc finger protein 568 enables ISO UniProtKB:Q62318 (MGI:5908508|PMID:27658112) RGD PMID:27658112 MGI:5908508 NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505 		JBrowse link
G Zfp644 zinc finger protein 644 enables ISO UniProtKB:Q96JN0 (PMID:29628311) RGD PMID:29628311 NCBI chr14:3,105,002...3,179,961
Ensembl chr14:3,105,178...3,179,940 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20486
    binding 17536
      protein binding 14558
        transcription factor binding 655
          transcription coregulator binding 138
            transcription coactivator binding 54
            transcription corepressor binding 57
paths to the root