Zfp644 (zinc finger protein 644) - Rat Genome Database
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Gene: Zfp644 (zinc finger protein 644) Rattus norvegicus
Analyze
Symbol: Zfp644
Name: zinc finger protein 644
RGD ID: 1306805
Description: Predicted to have DNA-binding transcription factor activity and RNA polymerase II transcription corepressor binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in myopia. Orthologous to human ZNF644 (zinc finger protein 644); INTERACTS WITH bisphenol A; chlorpyrifos; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC690213; LOC305127; LOC690213; RGD1306805; similar to mKIAA1221 protein; Znf644
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
Rnor_6.0 Ensembl144,125,380 - 4,200,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0144,125,368 - 4,200,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0144,120,819 - 4,195,999 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4143,645,610 - 3,720,694 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1143,697,701 - 3,719,173 (+)NCBI
Celera143,110,703 - 3,185,226 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References


Genomics

Comparative Map Data
Zfp644
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
Rnor_6.0 Ensembl144,125,380 - 4,200,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0144,125,368 - 4,200,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0144,120,819 - 4,195,999 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4143,645,610 - 3,720,694 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1143,697,701 - 3,719,173 (+)NCBI
Celera143,110,703 - 3,185,226 (+)NCBICelera
Cytogenetic Map14p22NCBI
ZNF644
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl190,915,298 - 91,022,272 (-)EnsemblGRCh38hg38GRCh38
GRCh38190,915,304 - 91,022,267 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37191,380,861 - 91,487,592 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37191,380,855 - 91,487,812 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,153,443 - 91,260,259 (-)NCBINCBI36hg18NCBI36
Celera189,629,009 - 89,735,831 (-)NCBI
Cytogenetic Map1p22.2NCBI
HuRef189,499,857 - 89,606,862 (-)NCBIHuRef
CHM1_1191,496,050 - 91,602,984 (-)NCBICHM1_1
Zfp644
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395106,764,605 - 106,844,696 (-)NCBIGRCm39mm39
GRCm385106,616,739 - 106,696,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5106,616,739 - 106,697,287 (-)EnsemblGRCm38mm10GRCm38
MGSCv375107,045,760 - 107,125,849 (-)NCBIGRCm37mm9NCBIm37
MGSCv365106,857,043 - 106,937,132 (-)NCBImm8
Celera5103,729,303 - 103,809,274 (-)NCBICelera
Cytogenetic Map5E5NCBI
cM Map551.43NCBI
Znf644
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554233,251,119 - 3,348,039 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554233,251,726 - 3,346,023 (+)NCBIChiLan1.0ChiLan1.0
ZNF644
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1192,321,046 - 92,433,632 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl192,322,540 - 92,348,120 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0193,573,781 - 93,686,786 (-)NCBIMhudiblu_PPA_v0panPan3
ZNF644
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl657,686,396 - 57,791,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1657,685,465 - 57,792,968 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Znf644
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365377,850,409 - 7,954,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF644
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4125,740,372 - 125,863,620 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14125,740,325 - 125,856,188 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24137,329,996 - 137,432,351 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF644
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12042,449,639 - 42,550,975 (+)NCBI
ChlSab1.1 Ensembl2042,449,837 - 42,553,039 (+)Ensembl
Znf644
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247426,694,505 - 6,804,608 (+)NCBI

Position Markers
RH129046  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0144,199,989 - 4,200,190NCBIRnor6.0
Rnor_5.0144,195,656 - 4,195,857UniSTSRnor5.0
RGSC_v3.4143,720,355 - 3,720,556UniSTSRGSC3.4
Celera143,184,887 - 3,185,088UniSTS
RH 3.4 Map1458.2UniSTS
Cytogenetic Map14p22UniSTS
RH129714  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0144,199,987 - 4,200,191NCBIRnor6.0
Rnor_5.0144,195,654 - 4,195,858UniSTSRnor5.0
RGSC_v3.4143,720,353 - 3,720,557UniSTSRGSC3.4
Celera143,184,885 - 3,185,089UniSTS
RH 3.4 Map1456.8UniSTS
Cytogenetic Map14p22UniSTS
BF413075  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0144,178,989 - 4,179,091NCBIRnor6.0
Rnor_5.0144,174,656 - 4,174,758UniSTSRnor5.0
RGSC_v3.4143,699,354 - 3,699,456UniSTSRGSC3.4
Celera143,163,877 - 3,163,979UniSTS
RH 3.4 Map1458.5UniSTS
Cytogenetic Map14p22UniSTS
RH140596  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0144,167,523 - 4,167,728NCBIRnor6.0
Rnor_5.0144,163,190 - 4,163,395UniSTSRnor5.0
RGSC_v3.4143,687,888 - 3,688,093UniSTSRGSC3.4
Celera143,152,411 - 3,152,616UniSTS
RH 3.4 Map1446.1UniSTS
Cytogenetic Map14p22UniSTS
AI229582  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0144,194,549 - 4,194,698NCBIRnor5.0
RGSC_v3.4143,719,248 - 3,719,397UniSTSRGSC3.4
Celera143,183,780 - 3,183,929UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14222782512680613Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14222782519230541Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:128
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000002882
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 32 34 18 19 18 8 8 74 28 39 11 8
Low 1 11 23 23 23 3 7 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002882   ⟹   ENSRNOP00000002882
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl144,125,380 - 4,200,328 (+)Ensembl
RefSeq Acc Id: NM_001139484   ⟹   NP_001132956
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,016 - 3,179,940 (+)NCBI
Rnor_6.0144,125,380 - 4,200,328 (+)NCBI
Rnor_5.0144,120,819 - 4,195,999 (+)NCBI
RGSC_v3.4143,645,610 - 3,720,694 (+)RGD
Celera143,110,703 - 3,185,226 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250550   ⟹   XP_006250612
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
Rnor_6.0144,125,688 - 4,200,332 (+)NCBI
Rnor_5.0144,120,819 - 4,195,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250554   ⟹   XP_006250616
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
Rnor_6.0144,125,370 - 4,200,332 (+)NCBI
Rnor_5.0144,120,819 - 4,195,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769931   ⟹   XP_008768153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,154,303 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769932   ⟹   XP_008768154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,688 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769933   ⟹   XP_008768155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,688 - 4,197,762 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769935   ⟹   XP_008768157
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,688 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599151   ⟹   XP_017454640
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,155,082 - 3,179,955 (+)NCBI
Rnor_6.0144,175,337 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599152   ⟹   XP_017454641
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
Rnor_6.0144,125,369 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599153   ⟹   XP_017454642
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,503 - 3,179,955 (+)NCBI
Rnor_6.0144,125,938 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599154   ⟹   XP_017454643
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,368 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599155   ⟹   XP_017454644
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,936 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091805   ⟹   XP_038947733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
RefSeq Acc Id: XM_039091806   ⟹   XP_038947734
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,155,082 - 3,179,955 (+)NCBI
RefSeq Acc Id: XM_039091807   ⟹   XP_038947735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,106,044 - 3,179,955 (+)NCBI
RefSeq Acc Id: XM_039091808   ⟹   XP_038947736
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,134,214 - 3,179,955 (+)NCBI
RefSeq Acc Id: XM_039091809   ⟹   XP_038947737
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,134,264 - 3,179,955 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001132956   ⟸   NM_001139484
- UniProtKB: D4A778 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250616   ⟸   XM_006250554
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006250612   ⟸   XM_006250550
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008768157   ⟸   XM_008769935
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008768154   ⟸   XM_008769932
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008768155   ⟸   XM_008769933
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008768153   ⟸   XM_008769931
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017454643   ⟸   XM_017599154
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017454641   ⟸   XM_017599152
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017454644   ⟸   XM_017599155
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017454642   ⟸   XM_017599153
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017454640   ⟸   XM_017599151
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000002882   ⟸   ENSRNOT00000002882
RefSeq Acc Id: XP_038947733   ⟸   XM_039091805
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947735   ⟸   XM_039091807
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038947736   ⟸   XM_039091808
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038947737   ⟸   XM_039091809
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038947734   ⟸   XM_039091806
- Peptide Label: isoform X4
Protein Domains
C2H2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699164
Promoter ID:EPDNEW_R9689
Type:initiation region
Name:Zfp644_2
Description:zinc finger protein 644
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9690  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,415 - 4,125,475EPDNEW
RGD ID:13699165
Promoter ID:EPDNEW_R9690
Type:multiple initiation site
Name:Zfp644_1
Description:zinc finger protein 644
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9689  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,636 - 4,125,696EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306805 AgrOrtholog
Ensembl Genes ENSRNOG00000002112 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002882 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002882 ENTREZGENE, UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:305127 UniProtKB/TrEMBL
NCBI Gene 305127 ENTREZGENE
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp644 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt D4A778 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Zfp644  zinc finger protein 644  LOC690213  hypothetical protein LOC690213  Data Merged 737654 PROVISIONAL
2011-07-19 Zfp644  zinc finger protein 644  Znf644  zinc finger protein 644  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Znf644  zinc finger protein 644  Zfp644  zinc finger protein 644   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfp644  zinc finger protein 644   Zfp644_predicted  zinc finger protein 644 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC690213  hypothetical protein LOC690213      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Zfp644_predicted  zinc finger protein 644 (predicted)  RGD1306805_predicted  similar to mKIAA1221 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1306805_predicted  similar to mKIAA1221 protein (predicted)  LOC305127_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305127_predicted  similar to mKIAA1221 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL