Zfp644 (zinc finger protein 644) - Rat Genome Database

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Gene: Zfp644 (zinc finger protein 644) Rattus norvegicus
Analyze
Symbol: Zfp644
Name: zinc finger protein 644
RGD ID: 1306805
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and transcription corepressor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in myopia. Orthologous to human ZNF644 (zinc finger protein 644); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; chlorpyrifos.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC690213; LOC305127; LOC690213; RGD1306805; similar to mKIAA1221 protein; Znf644
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2143,105,002 - 3,179,955 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl143,105,178 - 3,179,940 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,976,806 - 3,051,603 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0144,278,303 - 4,353,100 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0142,978,842 - 3,053,634 (+)NCBIRnor_WKY
Rnor_6.0144,125,368 - 4,200,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl144,125,380 - 4,200,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0144,120,819 - 4,195,999 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4143,645,610 - 3,720,694 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1143,697,701 - 3,719,173 (+)NCBI
Celera143,110,703 - 3,185,226 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zfp644
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2143,105,002 - 3,179,955 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl143,105,178 - 3,179,940 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,976,806 - 3,051,603 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0144,278,303 - 4,353,100 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0142,978,842 - 3,053,634 (+)NCBIRnor_WKY
Rnor_6.0144,125,368 - 4,200,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl144,125,380 - 4,200,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0144,120,819 - 4,195,999 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4143,645,610 - 3,720,694 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1143,697,701 - 3,719,173 (+)NCBI
Celera143,110,703 - 3,185,226 (+)NCBICelera
Cytogenetic Map14p22NCBI
ZNF644
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38190,915,304 - 91,022,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl190,915,298 - 91,022,272 (-)EnsemblGRCh38hg38GRCh38
GRCh37191,380,861 - 91,487,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,153,443 - 91,260,259 (-)NCBINCBI36Build 36hg18NCBI36
Celera189,629,009 - 89,735,831 (-)NCBICelera
Cytogenetic Map1p22.2NCBI
HuRef189,499,857 - 89,606,862 (-)NCBIHuRef
CHM1_1191,496,050 - 91,602,984 (-)NCBICHM1_1
T2T-CHM13v2.0190,759,864 - 90,866,654 (-)NCBIT2T-CHM13v2.0
Zfp644
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395106,764,605 - 106,844,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5106,764,605 - 106,845,153 (-)EnsemblGRCm39 Ensembl
GRCm385106,616,739 - 106,696,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5106,616,739 - 106,697,287 (-)EnsemblGRCm38mm10GRCm38
MGSCv375107,045,760 - 107,125,849 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365106,857,043 - 106,937,132 (-)NCBIMGSCv36mm8
Celera5103,729,303 - 103,809,274 (-)NCBICelera
Cytogenetic Map5E5NCBI
cM Map551.43NCBI
Znf644
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554233,251,119 - 3,348,039 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554233,251,726 - 3,346,023 (+)NCBIChiLan1.0ChiLan1.0
ZNF644
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1192,321,046 - 92,433,632 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl192,322,540 - 92,348,120 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0193,573,781 - 93,686,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZNF644
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1657,685,465 - 57,792,968 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl657,686,396 - 57,791,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha660,390,831 - 60,544,151 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0658,069,666 - 58,223,879 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl658,069,805 - 58,178,079 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1657,744,929 - 57,897,925 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0657,720,139 - 57,873,143 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0658,199,890 - 58,353,096 (+)NCBIUU_Cfam_GSD_1.0
Znf644
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058100,993,342 - 101,097,550 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365377,850,409 - 7,954,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF644
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4125,741,711 - 125,856,185 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14125,740,325 - 125,856,188 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24137,329,996 - 137,432,351 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF644
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12042,449,639 - 42,550,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2042,449,837 - 42,553,039 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603375,421,927 - 75,523,700 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf644
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247426,694,452 - 6,804,608 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247426,694,505 - 6,804,608 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH129046  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2143,179,600 - 3,179,802 (+)MAPPERmRatBN7.2
Rnor_6.0144,199,989 - 4,200,190NCBIRnor6.0
Rnor_5.0144,195,656 - 4,195,857UniSTSRnor5.0
RGSC_v3.4143,720,355 - 3,720,556UniSTSRGSC3.4
Celera143,184,887 - 3,185,088UniSTS
RH 3.4 Map1458.2UniSTS
Cytogenetic Map14p22UniSTS
RH129714  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2143,179,598 - 3,179,803 (+)MAPPERmRatBN7.2
Rnor_6.0144,199,987 - 4,200,191NCBIRnor6.0
Rnor_5.0144,195,654 - 4,195,858UniSTSRnor5.0
RGSC_v3.4143,720,353 - 3,720,557UniSTSRGSC3.4
Celera143,184,885 - 3,185,089UniSTS
RH 3.4 Map1456.8UniSTS
Cytogenetic Map14p22UniSTS
BF413075  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2143,158,598 - 3,158,701 (+)MAPPERmRatBN7.2
Rnor_6.0144,178,989 - 4,179,091NCBIRnor6.0
Rnor_5.0144,174,656 - 4,174,758UniSTSRnor5.0
RGSC_v3.4143,699,354 - 3,699,456UniSTSRGSC3.4
Celera143,163,877 - 3,163,979UniSTS
RH 3.4 Map1458.5UniSTS
Cytogenetic Map14p22UniSTS
RH140596  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2143,147,132 - 3,147,338 (+)MAPPERmRatBN7.2
Rnor_6.0144,167,523 - 4,167,728NCBIRnor6.0
Rnor_5.0144,163,190 - 4,163,395UniSTSRnor5.0
RGSC_v3.4143,687,888 - 3,688,093UniSTSRGSC3.4
Celera143,152,411 - 3,152,616UniSTS
RH 3.4 Map1446.1UniSTS
Cytogenetic Map14p22UniSTS
AI229582  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0144,194,549 - 4,194,698NCBIRnor5.0
RGSC_v3.4143,719,248 - 3,719,397UniSTSRGSC3.4
Celera143,183,780 - 3,183,929UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:128
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000002882
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 32 34 18 19 18 8 8 74 28 39 11 8
Low 1 11 23 23 23 3 7 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001139484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000002882   ⟹   ENSRNOP00000002882
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl143,158,036 - 3,179,940 (+)Ensembl
Rnor_6.0 Ensembl144,125,380 - 4,200,328 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097018   ⟹   ENSRNOP00000087711
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl143,105,178 - 3,179,940 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117440   ⟹   ENSRNOP00000085517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl143,105,194 - 3,179,940 (+)Ensembl
RefSeq Acc Id: NM_001139484   ⟹   NP_001132956
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,016 - 3,179,940 (+)NCBI
Rnor_6.0144,125,380 - 4,200,328 (+)NCBI
Rnor_5.0144,120,819 - 4,195,999 (+)NCBI
RGSC_v3.4143,645,610 - 3,720,694 (+)RGD
Celera143,110,703 - 3,185,226 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250550   ⟹   XP_006250612
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
Rnor_6.0144,125,688 - 4,200,332 (+)NCBI
Rnor_5.0144,120,819 - 4,195,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250554   ⟹   XP_006250616
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
Rnor_6.0144,125,370 - 4,200,332 (+)NCBI
Rnor_5.0144,120,819 - 4,195,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599151   ⟹   XP_017454640
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,155,082 - 3,179,955 (+)NCBI
Rnor_6.0144,175,337 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599152   ⟹   XP_017454641
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
Rnor_6.0144,125,369 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599153   ⟹   XP_017454642
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,503 - 3,179,955 (+)NCBI
Rnor_6.0144,125,938 - 4,200,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091805   ⟹   XP_038947733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,105,002 - 3,179,955 (+)NCBI
RefSeq Acc Id: XM_039091806   ⟹   XP_038947734
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,155,082 - 3,179,955 (+)NCBI
RefSeq Acc Id: XM_039091807   ⟹   XP_038947735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,106,044 - 3,179,955 (+)NCBI
RefSeq Acc Id: XM_039091808   ⟹   XP_038947736
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,134,214 - 3,179,955 (+)NCBI
RefSeq Acc Id: XM_039091809   ⟹   XP_038947737
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,134,264 - 3,179,955 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001132956   ⟸   NM_001139484
- UniProtKB: D4A778 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250616   ⟸   XM_006250554
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006250612   ⟸   XM_006250550
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017454641   ⟸   XM_017599152
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017454642   ⟸   XM_017599153
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017454640   ⟸   XM_017599151
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000002882   ⟸   ENSRNOT00000002882
RefSeq Acc Id: XP_038947733   ⟸   XM_039091805
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947735   ⟸   XM_039091807
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038947736   ⟸   XM_039091808
- Peptide Label: isoform X6
- UniProtKB: D4A778 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947737   ⟸   XM_039091809
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038947734   ⟸   XM_039091806
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000087711   ⟸   ENSRNOT00000097018
RefSeq Acc Id: ENSRNOP00000085517   ⟸   ENSRNOT00000117440
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A778-F1-model_v2 AlphaFold D4A778 1-1289 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699164
Promoter ID:EPDNEW_R9689
Type:initiation region
Name:Zfp644_2
Description:zinc finger protein 644
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9690  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,415 - 4,125,475EPDNEW
RGD ID:13699165
Promoter ID:EPDNEW_R9690
Type:multiple initiation site
Name:Zfp644_1
Description:zinc finger protein 644
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9689  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0144,125,636 - 4,125,696EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306805 AgrOrtholog
BioCyc Gene G2FUF-16578 BioCyc
Ensembl Genes ENSRNOG00000002112 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002882 ENTREZGENE
  ENSRNOP00000002882.6 UniProtKB/TrEMBL
  ENSRNOP00000085517 ENTREZGENE
  ENSRNOP00000085517.1 UniProtKB/TrEMBL
  ENSRNOP00000087711 ENTREZGENE
  ENSRNOP00000087711.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002882 ENTREZGENE
  ENSRNOT00000002882.7 UniProtKB/TrEMBL
  ENSRNOT00000097018 ENTREZGENE
  ENSRNOT00000097018.1 UniProtKB/TrEMBL
  ENSRNOT00000117440 ENTREZGENE
  ENSRNOT00000117440.1 UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:305127 UniProtKB/TrEMBL
NCBI Gene 305127 ENTREZGENE
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp644 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6A0C1_RAT UniProtKB/TrEMBL
  A0A8I6A9B0_RAT UniProtKB/TrEMBL
  D4A778 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Zfp644  zinc finger protein 644  LOC690213  hypothetical protein LOC690213  Data Merged 737654 PROVISIONAL
2011-07-19 Zfp644  zinc finger protein 644  Znf644  zinc finger protein 644  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Znf644  zinc finger protein 644  Zfp644  zinc finger protein 644   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfp644  zinc finger protein 644   Zfp644_predicted  zinc finger protein 644 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC690213  hypothetical protein LOC690213      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Zfp644_predicted  zinc finger protein 644 (predicted)  RGD1306805_predicted  similar to mKIAA1221 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1306805_predicted  similar to mKIAA1221 protein (predicted)  LOC305127_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305127_predicted  similar to mKIAA1221 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL