Chd6 (chromodomain helicase DNA binding protein 6) - Rat Genome Database

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Gene: Chd6 (chromodomain helicase DNA binding protein 6) Rattus norvegicus
Analyze
Symbol: Chd6
Name: chromodomain helicase DNA binding protein 6
RGD ID: 1310465
Description: Predicted to have DNA-dependent ATPase activity and transcription coregulator binding activity. Predicted to be involved in positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress. Predicted to localize to nucleoplasm. Orthologous to human CHD6 (chromodomain helicase DNA binding protein 6); PARTICIPATES IN nuclear factor, erythroid 2 like 2 signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ATP-dependent helicase CHD6; CHD-6; chromodomain-helicase-DNA-binding protein 6; LOC311607
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23149,596,509 - 149,757,765 (-)NCBI
Rnor_6.0 Ensembl3156,937,733 - 157,099,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03156,937,746 - 157,099,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03163,164,938 - 163,324,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43151,741,389 - 151,924,668 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13151,647,823 - 151,830,771 (-)NCBI
Celera3148,269,027 - 148,429,163 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:16314513   PMID:17027977  


Genomics

Comparative Map Data
Chd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23149,596,509 - 149,757,765 (-)NCBI
Rnor_6.0 Ensembl3156,937,733 - 157,099,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03156,937,746 - 157,099,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03163,164,938 - 163,324,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43151,741,389 - 151,924,668 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13151,647,823 - 151,830,771 (-)NCBI
Celera3148,269,027 - 148,429,163 (-)NCBICelera
Cytogenetic Map3q42NCBI
CHD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2041,402,083 - 41,618,384 (-)EnsemblGRCh38hg38GRCh38
GRCh382041,402,083 - 41,618,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372040,030,723 - 40,247,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362039,464,584 - 39,680,547 (-)NCBINCBI36hg18NCBI36
Build 342039,464,583 - 39,680,547NCBI
Celera2036,741,838 - 36,957,790 (-)NCBI
Cytogenetic Map20q12NCBI
HuRef2036,768,458 - 36,984,731 (-)NCBIHuRef
CHM1_12039,935,021 - 40,151,300 (-)NCBICHM1_1
Chd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392160,788,898 - 160,951,006 (-)NCBIGRCm39mm39
GRCm39 Ensembl2160,788,898 - 160,950,995 (-)Ensembl
GRCm382160,946,978 - 161,109,086 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2160,946,978 - 161,109,075 (-)EnsemblGRCm38mm10GRCm38
MGSCv372160,772,714 - 160,934,792 (-)NCBIGRCm37mm9NCBIm37
MGSCv362160,638,419 - 160,800,497 (-)NCBImm8
Celera2166,877,653 - 167,040,009 (-)NCBICelera
Cytogenetic Map2H2NCBI
Chd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544515,360,025 - 15,560,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544515,360,074 - 15,576,410 (+)NCBIChiLan1.0ChiLan1.0
CHD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12038,839,685 - 38,988,719 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2038,839,685 - 38,999,501 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02037,744,012 - 37,953,593 (-)NCBIMhudiblu_PPA_v0panPan3
CHD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12429,397,320 - 29,601,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2429,397,306 - 29,601,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2429,042,568 - 29,246,480 (-)NCBI
ROS_Cfam_1.02430,102,193 - 30,305,887 (-)NCBI
UMICH_Zoey_3.12429,370,977 - 29,574,934 (-)NCBI
UNSW_CanFamBas_1.02429,474,474 - 29,678,500 (-)NCBI
UU_Cfam_GSD_1.02429,971,008 - 30,174,849 (-)NCBI
Chd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640178,354,920 - 178,570,711 (-)NCBI
SpeTri2.0NW_004936561238,307 - 394,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1744,047,803 - 44,265,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11744,048,056 - 44,265,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21749,502,246 - 49,555,890 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHD6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,163,836 - 22,373,098 (+)NCBI
ChlSab1.1 Ensembl222,223,919 - 22,373,275 (+)Ensembl
Vero_WHO_p1.0NW_02366605070,981,245 - 71,189,656 (+)NCBI
Chd6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479012,610,418 - 12,858,062 (+)NCBI

Position Markers
D3Mco22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23149,662,152 - 149,662,411 (+)MAPPER
Rnor_6.03157,002,896 - 157,003,152NCBIRnor6.0
Rnor_5.03163,230,270 - 163,230,526UniSTSRnor5.0
RGSC_v3.43151,807,483 - 151,807,737RGDRGSC3.4
RGSC_v3.43151,807,481 - 151,807,737UniSTSRGSC3.4
RGSC_v3.13151,713,519 - 151,713,773RGD
Celera3148,334,584 - 148,334,840UniSTS
Cytogenetic Map3q42UniSTS
RH143820  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23149,598,826 - 149,598,947 (+)MAPPER
Rnor_6.03156,940,064 - 156,940,184NCBIRnor6.0
Rnor_5.03163,167,256 - 163,167,376UniSTSRnor5.0
RGSC_v3.43151,743,707 - 151,743,827UniSTSRGSC3.4
Celera3148,271,345 - 148,271,465UniSTS
RH 3.4 Map31366.6UniSTS
Cytogenetic Map3q42UniSTS
RH144348  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23149,674,946 - 149,675,180 (+)MAPPER
Rnor_6.03157,015,687 - 157,015,920NCBIRnor6.0
Rnor_5.03163,243,061 - 163,243,294UniSTSRnor5.0
RGSC_v3.43151,820,272 - 151,820,505UniSTSRGSC3.4
Celera3148,347,375 - 148,347,608UniSTS
RH 3.4 Map31364.7UniSTS
Cytogenetic Map3q42UniSTS
AW522475  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23149,614,786 - 149,614,929 (+)MAPPER
Rnor_6.03156,955,991 - 156,956,133NCBIRnor6.0
Rnor_5.03163,183,211 - 163,183,353UniSTSRnor5.0
RGSC_v3.43151,759,971 - 151,760,113UniSTSRGSC3.4
Celera3148,287,265 - 148,287,407UniSTS
RH 3.4 Map31369.5UniSTS
Cytogenetic Map3q42UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)330846101172879276Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)343295930163640485Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)343295930163640485Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)345406058177699992Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)358204463170534769Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)361241033165369047Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)399465522168732722Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)3103141814176418101Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)3103141814176418101Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3103141814176418101Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3103141944170934860Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3114376250159376250Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3119471263164471263Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3125848628170848628Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3126575595165355668Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3128986468173986468Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3129787213177699992Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3130006659175006659Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3132875075176418101Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3136876155170935007Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3138374177177699992Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3138374177177699992Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3139578365177699992Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3146232777177699992Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3148034701177699992Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3148348517171467264Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3148348739163640325Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3150368003177699992Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3153381237174632112Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3153381237174632112Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3153381237174632112Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3153381237174632112Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3153381237174632112Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3153381237174632112Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3153381237174632112Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3153412455165355668Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)3153412455170534769Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3153412455177699992Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3153918022177699992Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3156381661176418101Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:777
Count of miRNA genes:295
Interacting mature miRNAs:389
Transcripts:ENSRNOT00000022861
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 29 21 5 19 5 1 1 74 35 37 11 1
Low 1 14 36 36 36 7 10 4 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000022861   ⟹   ENSRNOP00000022861
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3156,937,746 - 157,099,306 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089958   ⟹   ENSRNOP00000071893
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3156,937,733 - 157,049,666 (-)Ensembl
RefSeq Acc Id: NM_001107797   ⟹   NP_001101267
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,509 - 149,757,755 (-)NCBI
Rnor_6.03156,937,746 - 157,099,306 (-)NCBI
Rnor_5.03163,164,938 - 163,324,764 (-)NCBI
RGSC_v3.43151,741,389 - 151,924,668 (-)RGD
Celera3148,269,027 - 148,429,163 (-)RGD
Sequence:
RefSeq Acc Id: XM_006235482   ⟹   XP_006235544
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03156,937,746 - 157,050,230 (-)NCBI
Rnor_5.03163,164,938 - 163,324,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235483   ⟹   XP_006235545
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03156,937,746 - 157,049,607 (-)NCBI
Rnor_5.03163,164,938 - 163,324,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235484   ⟹   XP_006235546
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,757,765 (-)NCBI
Rnor_6.03156,937,746 - 157,050,230 (-)NCBI
Rnor_5.03163,164,938 - 163,324,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762345   ⟹   XP_008760567
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,757,765 (-)NCBI
Rnor_6.03156,937,746 - 157,099,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762346   ⟹   XP_008760568
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,757,758 (-)NCBI
Rnor_6.03156,937,746 - 157,099,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591789   ⟹   XP_017447278
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,709,234 (-)NCBI
Rnor_6.03156,937,746 - 157,049,630 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591790   ⟹   XP_017447279
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,757,765 (-)NCBI
Rnor_6.03156,937,746 - 157,050,230 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591791   ⟹   XP_017447280
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03156,937,746 - 157,050,230 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105103   ⟹   XP_038961031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,736,528 (-)NCBI
RefSeq Acc Id: XM_039105104   ⟹   XP_038961032
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,728,465 (-)NCBI
RefSeq Acc Id: XM_039105105   ⟹   XP_038961033
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,757,765 (-)NCBI
RefSeq Acc Id: XM_039105106   ⟹   XP_038961034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,757,765 (-)NCBI
RefSeq Acc Id: XM_039105107   ⟹   XP_038961035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,757,765 (-)NCBI
RefSeq Acc Id: XM_039105108   ⟹   XP_038961036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,682,473 (-)NCBI
RefSeq Acc Id: XM_039105109   ⟹   XP_038961037
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,610,586 - 149,757,765 (-)NCBI
RefSeq Acc Id: XM_039105110   ⟹   XP_038961038
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,663,541 (-)NCBI
RefSeq Acc Id: XM_039105111   ⟹   XP_038961039
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,660,495 (-)NCBI
RefSeq Acc Id: XM_039105112   ⟹   XP_038961040
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,639,856 (-)NCBI
RefSeq Acc Id: XM_039105113   ⟹   XP_038961041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,632,382 (-)NCBI
RefSeq Acc Id: XM_039105114   ⟹   XP_038961042
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,618,377 - 149,757,765 (-)NCBI
RefSeq Acc Id: XM_039105115   ⟹   XP_038961043
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,618,377 - 149,757,765 (-)NCBI
RefSeq Acc Id: XM_039105116   ⟹   XP_038961044
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,596,511 - 149,629,356 (-)NCBI
RefSeq Acc Id: XR_005501894
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,610,600 - 149,757,765 (-)NCBI
RefSeq Acc Id: XR_005501895
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,610,600 - 149,757,765 (-)NCBI
RefSeq Acc Id: XR_005501896
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,616,722 - 149,757,765 (-)NCBI
RefSeq Acc Id: XR_005501897
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,616,722 - 149,757,765 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101267   ⟸   NM_001107797
- UniProtKB: D3ZA12 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006235546   ⟸   XM_006235484
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006235544   ⟸   XM_006235482
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006235545   ⟸   XM_006235483
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008760568   ⟸   XM_008762346
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008760567   ⟸   XM_008762345
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447279   ⟸   XM_017591790
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017447280   ⟸   XM_017591791
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017447278   ⟸   XM_017591789
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K1L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071893   ⟸   ENSRNOT00000089958
RefSeq Acc Id: ENSRNOP00000022861   ⟸   ENSRNOT00000022861
RefSeq Acc Id: XP_038961033   ⟸   XM_039105105
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038961035   ⟸   XM_039105107
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038961034   ⟸   XM_039105106
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038961031   ⟸   XM_039105103
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961032   ⟸   XM_039105104
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961036   ⟸   XM_039105108
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038961038   ⟸   XM_039105110
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038961039   ⟸   XM_039105111
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038961040   ⟸   XM_039105112
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038961041   ⟸   XM_039105113
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038961044   ⟸   XM_039105116
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038961037   ⟸   XM_039105109
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038961043   ⟸   XM_039105115
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038961042   ⟸   XM_039105114
- Peptide Label: isoform X15
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692629
Promoter ID:EPDNEW_R3152
Type:multiple initiation site
Name:Chd6_1
Description:chromodomain helicase DNA binding protein 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03157,099,252 - 157,099,312EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310465 AgrOrtholog
Ensembl Genes ENSRNOG00000016744 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022861 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000071893 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022861 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000089958 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10810 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BRK_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAH_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:311607 UniProtKB/Swiss-Prot
NCBI Gene 311607 ENTREZGENE
Pfam Chromo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chd6 PhenoGen
PROSITE CHROMO_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEAH_ATP_HELICASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BRK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K1L7 ENTREZGENE, UniProtKB/TrEMBL
  CHD6_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Chd6  chromodomain helicase DNA binding protein 6   Chd6_predicted  chromodomain helicase DNA binding protein 6 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chd6_predicted  chromodomain helicase DNA binding protein 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED