Trerf1 (transcriptional regulating factor 1) - Rat Genome Database

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Gene: Trerf1 (transcriptional regulating factor 1) Rattus norvegicus
Analyze
Symbol: Trerf1
Name: transcriptional regulating factor 1
RGD ID: 1307167
Description: Predicted to enable nuclear progesterone receptor binding activity; transcription coactivator binding activity; and transcription coregulator activity. Predicted to be involved in cellular response to steroid hormone stimulus and regulation of DNA-templated transcription. Predicted to be located in cytosol; fibrillar center; and nucleoplasm. Predicted to be part of histone deacetylase complex and transcription regulator complex. Predicted to be active in nucleus. Orthologous to human TRERF1 (transcriptional regulating factor 1); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC316219; transcriptional-regulating factor 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,131,772 - 21,355,830 (-)NCBIGRCr8
mRatBN7.2913,631,619 - 13,858,326 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,634,126 - 13,857,029 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx922,214,390 - 22,258,656 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,278,246 - 27,322,500 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,577,796 - 25,622,040 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,653,230 - 15,881,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,655,735 - 15,700,312 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,574,701 - 14,796,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,092,501 - 9,136,587 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.199,087,025 - 9,122,687 (-)NCBI
Celera911,384,447 - 11,428,680 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amphetamine  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyproterone acetate  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
ketoconazole  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
melphalan  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
paracetamol  (EXP)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
thimerosal  (ISO)
thiram  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11349124   PMID:16371131  


Genomics

Comparative Map Data
Trerf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,131,772 - 21,355,830 (-)NCBIGRCr8
mRatBN7.2913,631,619 - 13,858,326 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,634,126 - 13,857,029 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx922,214,390 - 22,258,656 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,278,246 - 27,322,500 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,577,796 - 25,622,040 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,653,230 - 15,881,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,655,735 - 15,700,312 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,574,701 - 14,796,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,092,501 - 9,136,587 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.199,087,025 - 9,122,687 (-)NCBI
Celera911,384,447 - 11,428,680 (-)NCBICelera
Cytogenetic Map9q12NCBI
TRERF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38642,224,931 - 42,452,224 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl642,224,931 - 42,452,051 (-)EnsemblGRCh38hg38GRCh38
GRCh37642,192,669 - 42,419,962 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36642,303,842 - 42,527,761 (-)NCBINCBI36Build 36hg18NCBI36
Build 34642,303,842 - 42,527,761NCBI
Celera643,745,111 - 43,972,220 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,910,461 - 42,137,937 (-)NCBIHuRef
CHM1_1642,195,138 - 42,422,851 (-)NCBICHM1_1
T2T-CHM13v2.0642,053,174 - 42,280,526 (-)NCBIT2T-CHM13v2.0
Trerf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391747,451,868 - 47,673,250 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1747,451,801 - 47,672,883 (+)EnsemblGRCm39 Ensembl
GRCm381747,140,942 - 47,362,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,140,875 - 47,361,958 (+)EnsemblGRCm38mm10GRCm38
MGSCv371747,277,891 - 47,496,407 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361746,777,140 - 46,822,640 (+)NCBIMGSCv36mm8
Celera1750,576,035 - 50,794,248 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.91NCBI
Trerf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,413,408 - 8,451,256 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,411,951 - 8,600,283 (-)NCBIChiLan1.0ChiLan1.0
TRERF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,724,129 - 56,948,294 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1652,594,147 - 52,818,245 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,813,074 - 42,040,373 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1643,112,581 - 43,339,228 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl643,112,170 - 43,156,872 (-)Ensemblpanpan1.1panPan2
TRERF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,838,887 - 11,047,017 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1210,842,059 - 10,962,677 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,871,264 - 11,074,860 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01211,323,287 - 11,528,100 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1211,320,515 - 11,527,717 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,852,754 - 11,056,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,936,664 - 11,141,706 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01211,030,924 - 11,235,545 (-)NCBIUU_Cfam_GSD_1.0
Trerf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,304,751 - 46,521,069 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,527,394 - 17,655,453 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,439,172 - 17,654,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRERF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl737,333,947 - 37,554,570 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1737,333,379 - 37,555,299 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,789,819 - 43,111,443 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRERF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11729,700,505 - 29,927,247 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1729,883,231 - 29,927,388 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604442,249,760 - 42,476,927 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trerf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,023,086 - 17,061,255 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,865,636 - 17,062,477 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trerf1
1608 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:38
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000035907
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat

Markers in Region
D9Got140  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2913,647,660 - 13,647,903 (+)MAPPERmRatBN7.2
mRatBN7.2913,647,660 - 13,648,039 (+)MAPPERmRatBN7.2
Rnor_6.0915,669,271 - 15,669,691NCBIRnor6.0
Rnor_6.0915,669,271 - 15,669,513NCBIRnor6.0
Rnor_5.0914,590,261 - 14,590,503UniSTSRnor5.0
Rnor_5.0914,590,261 - 14,590,681UniSTSRnor5.0
RGSC_v3.499,106,034 - 9,106,276UniSTSRGSC3.4
RGSC_v3.499,106,033 - 9,106,276RGDRGSC3.4
RGSC_v3.199,103,356 - 9,103,598RGD
Celera911,397,980 - 11,398,220UniSTS
RH 3.4 Map961.1UniSTS
RH 3.4 Map961.1RGD
RH 2.0 Map963.5RGD
Cytogenetic Map9q12UniSTS
BF388487  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2913,650,306 - 13,650,473 (+)MAPPERmRatBN7.2
Rnor_6.0915,672,095 - 15,672,261NCBIRnor6.0
Rnor_5.0914,593,085 - 14,593,251UniSTSRnor5.0
RGSC_v3.499,108,680 - 9,108,846UniSTSRGSC3.4
Celera911,400,624 - 11,400,790UniSTS
RH 3.4 Map945.7UniSTS
Cytogenetic Map9q12UniSTS
RH137864  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2913,634,261 - 13,634,456 (+)MAPPERmRatBN7.2
Rnor_6.0915,655,874 - 15,656,068NCBIRnor6.0
Rnor_5.0914,576,864 - 14,577,058UniSTSRnor5.0
RGSC_v3.499,092,637 - 9,092,831UniSTSRGSC3.4
Celera911,384,583 - 11,384,777UniSTS
RH 3.4 Map945.4UniSTS
Cytogenetic Map9q12UniSTS
BI276779  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2913,673,912 - 13,674,075 (+)MAPPERmRatBN7.2
Rnor_6.0915,695,887 - 15,696,049NCBIRnor6.0
Rnor_5.0914,616,877 - 14,617,039UniSTSRnor5.0
RGSC_v3.499,132,162 - 9,132,324UniSTSRGSC3.4
Celera911,424,249 - 11,424,411UniSTS
RH 3.4 Map960.2UniSTS
Cytogenetic Map9q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 2 2 1 2 62 20 36 4
Low 3 35 52 36 18 36 7 10 12 15 5 7 7
Below cutoff 3 3 3 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000035907   ⟹   ENSRNOP00000032697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl913,634,126 - 13,678,338 (-)Ensembl
Rnor_6.0 Ensembl915,655,738 - 15,700,312 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088713   ⟹   ENSRNOP00000072249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl913,634,126 - 13,678,338 (-)Ensembl
Rnor_6.0 Ensembl915,655,735 - 15,700,235 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100821   ⟹   ENSRNOP00000097075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl913,634,402 - 13,857,029 (-)Ensembl
RefSeq Acc Id: NM_001108199   ⟹   NP_001101669
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,777 - 21,176,016 (-)NCBI
mRatBN7.2913,634,126 - 13,678,338 (-)NCBI
Rnor_6.0915,655,738 - 15,700,312 (-)NCBI
Rnor_5.0914,574,701 - 14,796,459 (-)NCBI
RGSC_v3.499,092,501 - 9,136,587 (-)RGD
Celera911,384,447 - 11,428,680 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244452   ⟹   XP_006244514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,289 (-)NCBI
mRatBN7.2913,631,619 - 13,857,610 (-)NCBI
Rnor_6.0915,653,230 - 15,878,717 (-)NCBI
Rnor_5.0914,574,701 - 14,796,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244453   ⟹   XP_006244515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,289 (-)NCBI
mRatBN7.2913,631,619 - 13,857,610 (-)NCBI
Rnor_6.0915,653,230 - 15,878,717 (-)NCBI
Rnor_5.0914,574,701 - 14,796,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596415   ⟹   XP_017451904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,289 (-)NCBI
mRatBN7.2913,631,619 - 13,857,610 (-)NCBI
Rnor_6.0915,653,230 - 15,878,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596416   ⟹   XP_017451905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,289 (-)NCBI
mRatBN7.2913,631,619 - 13,857,609 (-)NCBI
Rnor_6.0915,653,230 - 15,878,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083491   ⟹   XP_038939419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,315 (-)NCBI
mRatBN7.2913,631,619 - 13,857,612 (-)NCBI
RefSeq Acc Id: XM_039083492   ⟹   XP_038939420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,830 (-)NCBI
mRatBN7.2913,631,619 - 13,858,066 (-)NCBI
RefSeq Acc Id: XM_039083493   ⟹   XP_038939421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,393 (-)NCBI
mRatBN7.2913,631,619 - 13,857,785 (-)NCBI
RefSeq Acc Id: XM_039083494   ⟹   XP_038939422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,526 (-)NCBI
mRatBN7.2913,631,619 - 13,857,838 (-)NCBI
RefSeq Acc Id: XM_039083495   ⟹   XP_038939423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,005 (-)NCBI
mRatBN7.2913,631,619 - 13,857,314 (-)NCBI
RefSeq Acc Id: XM_039083496   ⟹   XP_038939424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,265 (-)NCBI
mRatBN7.2913,631,619 - 13,857,612 (-)NCBI
RefSeq Acc Id: XM_039083497   ⟹   XP_038939425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,285,523 (-)NCBI
mRatBN7.2913,631,619 - 13,789,283 (-)NCBI
RefSeq Acc Id: XM_039083498   ⟹   XP_038939426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,273 (-)NCBI
mRatBN7.2913,631,619 - 13,857,612 (-)NCBI
RefSeq Acc Id: XM_039083499   ⟹   XP_038939427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,830 (-)NCBI
mRatBN7.2913,631,619 - 13,858,066 (-)NCBI
RefSeq Acc Id: XM_039083500   ⟹   XP_038939428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,393 (-)NCBI
mRatBN7.2913,631,619 - 13,857,785 (-)NCBI
RefSeq Acc Id: XM_039083501   ⟹   XP_038939429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,526 (-)NCBI
mRatBN7.2913,631,619 - 13,857,826 (-)NCBI
RefSeq Acc Id: XM_039083503   ⟹   XP_038939431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,289 (-)NCBI
mRatBN7.2913,631,619 - 13,857,612 (-)NCBI
RefSeq Acc Id: XM_039083505   ⟹   XP_038939433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,174,428 (-)NCBI
mRatBN7.2913,631,619 - 13,676,749 (-)NCBI
RefSeq Acc Id: XM_063267088   ⟹   XP_063123158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,830 (-)NCBI
RefSeq Acc Id: XM_063267089   ⟹   XP_063123159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,265 (-)NCBI
RefSeq Acc Id: XM_063267090   ⟹   XP_063123160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,830 (-)NCBI
RefSeq Acc Id: XM_063267091   ⟹   XP_063123161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,285,523 (-)NCBI
RefSeq Acc Id: XM_063267092   ⟹   XP_063123162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,131,772 - 21,355,830 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101669 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244514 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244515 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451904 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451905 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939419 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939420 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939421 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939422 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939423 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939424 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939425 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939426 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939427 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939428 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939429 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939431 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939433 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123158 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123159 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123160 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123161 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123162 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM18871 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000032697
  ENSRNOP00000032697.4
  ENSRNOP00000072249
  ENSRNOP00000072249.2
  ENSRNOP00000097075
  ENSRNOP00000097075.1
RefSeq Acc Id: NP_001101669   ⟸   NM_001108199
- UniProtKB: A6JIL1 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244515   ⟸   XM_006244453
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AN45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244514   ⟸   XM_006244452
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AN45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451905   ⟸   XM_017596416
- Peptide Label: isoform X6
- UniProtKB: A6JIL1 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451904   ⟸   XM_017596415
- Peptide Label: isoform X5
- UniProtKB: D3ZYN9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000032697   ⟸   ENSRNOT00000035907
RefSeq Acc Id: ENSRNOP00000072249   ⟸   ENSRNOT00000088713
RefSeq Acc Id: XP_038939427   ⟸   XM_039083499
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939420   ⟸   XM_039083492
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939422   ⟸   XM_039083494
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939429   ⟸   XM_039083501
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939428   ⟸   XM_039083500
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939421   ⟸   XM_039083493
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939426   ⟸   XM_039083498
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939431   ⟸   XM_039083503
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939419   ⟸   XM_039083491
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939424   ⟸   XM_039083496
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939423   ⟸   XM_039083495
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939425   ⟸   XM_039083497
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K2H9 (UniProtKB/TrEMBL),   A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939433   ⟸   XM_039083505
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000097075   ⟸   ENSRNOT00000100821
RefSeq Acc Id: XP_063123162   ⟸   XM_063267092
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123160   ⟸   XM_063267090
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AN45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123158   ⟸   XM_063267088
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AN45 (UniProtKB/TrEMBL),   A0A0G2K2H9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123159   ⟸   XM_063267089
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AN45 (UniProtKB/TrEMBL),   A0A0G2K2H9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123161   ⟸   XM_063267091
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AN45 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   ELM2   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K2H9-F1-model_v2 AlphaFold A0A0G2K2H9 1-1229 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307167 AgrOrtholog
BioCyc Gene G2FUF-28258 BioCyc
Ensembl Genes ENSRNOG00000022598 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035907.4 UniProtKB/TrEMBL
  ENSRNOT00000088713.2 UniProtKB/TrEMBL
  ENSRNOT00000100821 ENTREZGENE
  ENSRNOT00000100821.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro ELM2_dom UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:316219 UniProtKB/TrEMBL
NCBI Gene 316219 ENTREZGENE
PANTHER REST COREPRESSOR COREST PROTEIN-RELATED UniProtKB/TrEMBL
  TRANSCRIPTIONAL-REGULATING FACTOR 1 UniProtKB/TrEMBL
Pfam ELM2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PhenoGen Trerf1 PhenoGen
PROSITE ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022598 RatGTEx
SMART ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K2H9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AN45 ENTREZGENE, UniProtKB/TrEMBL
  A6JIL1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYN9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Trerf1  transcriptional regulating factor 1   Trerf1_predicted  transcriptional regulating factor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Trerf1_predicted  transcriptional regulating factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED