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ONTOLOGY REPORT - ANNOTATIONS

Term:protein-RNA complex assembly
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Accession:GO:0022618 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex.
Synonyms:exact_synonym: RNP complex assembly;   ribonucleoprotein complex assembly


show annotations for term's descendants           Sort by:
protein-RNA complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO MGI:2177650|MGI:5570192 (PMID:23936366) RGD PMID:23936366 NCBI chr 3:77,491,195...77,593,300
Ensembl chr 3:77,491,276...77,593,264 		JBrowse link
G Rpl38 ribosomal protein L38 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
Ensembl chr14:99,701,362...99,705,004
Ensembl chr 3:99,701,362...99,705,004
Ensembl chr 2:99,701,362...99,705,004
Ensembl chr16:99,701,362...99,705,004 		JBrowse link
G Rpl38-ps8 ribosomal protein L38, pseudogene 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,905,148...184,905,477
Ensembl chr 2:184,905,204...184,905,416
Ensembl chr16:184,905,204...184,905,416
Ensembl chr 3:184,905,204...184,905,416
Ensembl chr14:184,905,204...184,905,416 		JBrowse link
G Rpl38l1 ribosomal protein L38 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:60,296,358...60,296,687
Ensembl chr 4:60,296,410...60,296,622 		JBrowse link
G Rpl38l3 ribosomal protein L38 like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,969,607...68,969,819
Ensembl chr  X:68,969,607...68,969,819 		JBrowse link
G Rpl38l4 ribosomal protein L38 like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:67,435,131...67,435,363
Ensembl chr18:67,435,134...67,435,346 		JBrowse link
G Rpl38l6 ribosomal protein L38 like 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:143,285,738...143,286,894
Ensembl chr 3:143,286,247...143,286,435 		JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO
IEA 		(PMID:19383767)
GO_REF:0000107 		RGD
Ensembl		 PMID:19383767 GO_REF:0000107 NCBI chr 4:133,213,357...133,305,586
Ensembl chr 4:133,213,361...133,305,586 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO
IEA 		(PMID:33230114)
GO_REF:0000107 		RGD
Ensembl		 PMID:33230114 GO_REF:0000107 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828 		JBrowse link
90S preribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl38 ribosomal protein L38 acts_upstream_of_or_within ISO (PMID:21529712) RGD PMID:21529712 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
Ensembl chr14:99,701,362...99,705,004
Ensembl chr 3:99,701,362...99,705,004
Ensembl chr 2:99,701,362...99,705,004
Ensembl chr16:99,701,362...99,705,004 		JBrowse link
assembly of large subunit precursor of preribosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif6 eukaryotic translation initiation factor 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401 		JBrowse link
G Eif6-ps1 eukaryotic translation initiation factor 6, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:81,584,117...81,585,052
Ensembl chr14:81,584,160...81,584,897 		JBrowse link
box C/D snoRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nopchap1 NOP protein chaperone 1 involved_in ISO
IEA
IBA 		(PMID:33367824)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
InterPro
GO_Central		 PMID:33367824 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:20,353,626...20,359,685
Ensembl chr 7:20,353,634...20,359,690 		JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 involved_in ISO
IEA
IBA 		(PMID:17636026)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:17636026 GO_REF:0000033 GO_REF:0000107 NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO
IEA
IBA 		(PMID:17636026)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:17636026 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290 		JBrowse link
G Pih1d2 PIH1 domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:50,966,885...50,976,901
Ensembl chr 8:50,966,885...50,975,656 		JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384 		JBrowse link
G Ruvbl1-ps1 RuvB-like AAA ATPase 1, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in ISO (PMID:11842104) RGD PMID:11842104 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:17636026) RGD PMID:17636026 NCBI chr 2:33,528,388...33,532,395
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in ISO
IEA
IBA 		(PMID:17636026)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:17636026 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960 		JBrowse link
box H/ACA snoRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr16:22,837,583...22,868,320
Ensembl chr16:22,837,588...22,868,293 		JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:133,213,357...133,305,586
Ensembl chr 4:133,213,361...133,305,586 		JBrowse link
formation of cytoplasmic translation initiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07041140.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:113,216,366...113,217,655 JBrowse link
G Dcdc2b doublecortin domain containing 2B involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:141,950,574...141,957,476
Ensembl chr 5:141,951,031...141,967,365 		JBrowse link
G Eif3a eukaryotic translation initiation factor 3, subunit A involved_in ISO
IEA
IBA
ISS 		(PMID:17581632)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000104
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:17581632 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 1:259,902,767...259,932,976
Ensembl chr 1:259,902,680...259,932,976 		JBrowse link
G Eif3b eukaryotic translation initiation factor 3, subunit B involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:14,196,403...14,220,865
Ensembl chr12:14,196,403...14,220,886 		JBrowse link
G Eif3c eukaryotic translation initiation factor 3, subunit C involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:181,134,604...181,152,489
Ensembl chr 1:181,134,604...181,152,493 		JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D involved_in IEA
ISO 		GO_REF:0000104
(PMID:24092755)
GO_REF:0000107
(PMID:17581632) 		UniProt
RGD
Ensembl		 PMID:17581632 PMID:24092755 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:109,539,795...109,552,184
Ensembl chr 7:109,539,356...109,552,206 		JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:74,339,848...74,372,483
Ensembl chr 7:74,339,828...74,373,096 		JBrowse link
G Eif3el1 eukaryotic translation initiation factor 3, subunit E like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:73,774,491...73,775,984
Ensembl chr 1:73,774,487...73,776,003 		JBrowse link
G Eif3f eukaryotic translation initiation factor 3, subunit F involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:162,934,220...162,943,204
Ensembl chr 1:162,934,212...162,943,204 		JBrowse link
G Eif3g eukaryotic translation initiation factor 3, subunit G involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:19,429,728...19,433,760
Ensembl chr 8:19,429,643...19,433,808 		JBrowse link
G Eif3h eukaryotic translation initiation factor 3, subunit H involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:83,091,037...83,174,451
Ensembl chr 7:83,091,039...83,174,451 		JBrowse link
G Eif3i eukaryotic translation initiation factor 3, subunit I involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:141,935,135...141,942,589
Ensembl chr 5:141,935,044...141,942,676 		JBrowse link
G Eif3j eukaryotic translation initiation factor 3, subunit J involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:108,985,103...109,007,341
Ensembl chr 3:108,985,118...109,007,953 		JBrowse link
G Eif3k eukaryotic translation initiation factor 3, subunit K involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:84,260,127...84,270,051
Ensembl chr 1:84,259,673...84,270,302 		JBrowse link
G Eif3l eukaryotic translation initiation factor 3, subunit L involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:110,652,565...110,663,614
Ensembl chr 7:110,627,107...110,663,614 		JBrowse link
G Eif3m eukaryotic translation initiation factor 3, subunit M involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:91,424,754...91,442,358
Ensembl chr 3:91,416,325...91,442,392 		JBrowse link
G Eif5 eukaryotic translation initiation factor 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,589,162...130,597,656
Ensembl chr 6:130,589,143...130,597,656 		JBrowse link
G Eif5-ps1 eukaryotic translation initiation factor 5, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:53,566,365...53,569,726
Ensembl chr 3:53,566,757...53,568,645 		JBrowse link
G ENSRNOG00000062798 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:46,723,073...46,724,355 JBrowse link
formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Denr density regulated reinitiation and release factor involved_in ISO
IEA
IBA 		(PMID:20713520)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20713520 GO_REF:0000033 GO_REF:0000107 NCBI chr12:32,662,512...32,685,283
Ensembl chr12:32,662,516...32,683,843 		JBrowse link
G Dhx29 DExH-box helicase 29 involved_in ISO
IEA 		(PMID:23047696)
GO_REF:0000107 		RGD
Ensembl		 PMID:23047696 GO_REF:0000107 NCBI chr 2:44,560,653...44,611,450
Ensembl chr 2:44,560,714...44,611,445 		JBrowse link
G Eif2d eukaryotic translation initiation factor 2D involved_in ISO
IEA
IBA 		(PMID:20713520)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000002 		RGD
Ensembl
GO_Central
InterPro		 PMID:20713520 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr13:42,615,901...42,637,107
Ensembl chr13:42,615,911...42,639,719 		JBrowse link
G Eif2s3 eukaryotic translation initiation factor 2 subunit gamma involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:58,916,513...58,939,923
Ensembl chr  X:58,917,490...58,940,686 		JBrowse link
G Eif2s3y eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  Y:869,654...889,341
Ensembl chr  Y:869,689...889,340 		JBrowse link
G Eif4h eukaryotic translation initiation factor 4H involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:22,083,155...22,099,876
Ensembl chr12:22,082,835...22,099,876 		JBrowse link
G Eif5 eukaryotic translation initiation factor 5 IDA
IMP 		RGD PMID:8464924 PMID:10805737 RGD:728212, RGD:10755758 NCBI chr 6:130,589,162...130,597,656
Ensembl chr 6:130,589,143...130,597,656 		JBrowse link
G Mcts1 MCTS1, re-initiation and release factor involved_in ISO
IBA 		(PMID:20713520)
GO_REF:0000033 		RGD
GO_Central		 PMID:20713520 GO_REF:0000033 NCBI chr  X:117,350,723...117,362,504
Ensembl chr  X:117,350,889...117,362,504 		JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:344063 RGD:2299070 NCBI chr10:13,747,316...13,749,165
Ensembl chr10:13,747,301...13,749,163 		JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC134482366 splicing factor YJU2-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr16:21,108,942...21,109,883 JBrowse link
G Xab2 XPA binding protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692 		JBrowse link
G Yju2 YJU2 splicing factor involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:789,603...799,505
Ensembl chr 9:789,606...799,496 		JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979 		JBrowse link
mitochondrial large ribosomal subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx28 DEAD-box helicase 28 involved_in ISO
IEA
IBA 		(PMID:25683715)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:25683715 GO_REF:0000033 GO_REF:0000107 NCBI chr19:33,909,799...33,911,729
Ensembl chr19:33,909,801...33,911,742 		JBrowse link
G Dhx30 DExH-box helicase 30 involved_in ISO
IEA
ISS 		(PMID:25683715)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:25683715 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:110,064,751...110,096,954
Ensembl chr 8:110,064,752...110,097,381 		JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in ISO
ISS 		(PMID:25683715)
GO_REF:0000024 		RGD
UniProt		 PMID:25683715 GO_REF:0000024 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174 		JBrowse link
G LOC134479940 mitochondrial ribosome and complex I assembly factor AltMIEF1 involved_in ISO (PMID:31666358) RGD PMID:31666358 Ensembl chr 7:111,786,726...111,792,148 JBrowse link
G Mief1 mitochondrial elongation factor 1 involved_in ISO (PMID:31666358) RGD PMID:31666358 NCBI chr 7:111,786,630...111,802,220
Ensembl chr 7:111,786,709...111,802,220 		JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in ISO
IEA 		(PMID:35177605)
GO_REF:0000107 		RGD
Ensembl		 PMID:35177605 GO_REF:0000107 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118 		JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 involved_in ISO
IEA 		(PMID:30085276)
GO_REF:0000107 		RGD
Ensembl		 PMID:30085276 GO_REF:0000107 NCBI chr 1:194,931,543...194,944,278
Ensembl chr 1:194,931,531...194,944,277 		JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 involved_in ISO
IEA 		(PMID:32652011)
GO_REF:0000107 		RGD
Ensembl		 PMID:32652011 GO_REF:0000107 NCBI chr 3:167,165,542...167,181,358
Ensembl chr 3:167,165,982...167,181,358 		JBrowse link
G Rcc1l RCC1 like involved_in ISO (PMID:32735630)
(PMID:27667664) 		RGD PMID:27667664 PMID:32735630 NCBI chr12:22,543,125...22,574,042
Ensembl chr12:22,543,734...22,574,036 		JBrowse link
mitochondrial small ribosomal subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcat malonyl-CoA-acyl carrier protein transacylase involved_in ISO
IEA 		(PMID:36482135)
GO_REF:0000107 		RGD
Ensembl		 PMID:36482135 GO_REF:0000107 NCBI chr 7:116,573,632...116,585,767
Ensembl chr 7:114,693,612...114,704,542 		JBrowse link
G Mettl17 methyltransferase like 17 involved_in ISO (PMID:36482135), (PMID:38199006) RGD PMID:36482135 PMID:38199006 NCBI chr15:24,582,296...24,589,029
Ensembl chr15:24,582,406...24,589,026 		JBrowse link
G Rcc1l RCC1 like involved_in ISO (PMID:32735630) RGD PMID:32735630 NCBI chr12:22,543,125...22,574,042
Ensembl chr12:22,543,734...22,574,036 		JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188 		JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
IEA
ISS 		(PMID:15728250)
GO_REF:0000107
PMID:15181151 		RGD
Ensembl		 PMID:15728250 PMID:15181151 GO_REF:0000107, RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349 		JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000066758 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002
GO_REF:0000104 		GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 Ensembl chr  X:14,995,412...14,996,454 JBrowse link
G LOC120099250 U1 small nuclear ribonucleoprotein C-like involved_in IEA GO_REF:0000104
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr  X:135,673,708...135,678,865
Ensembl chr  X:135,677,760...135,678,704 		JBrowse link
G Prpf39 pre-mRNA processing factor 39 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825 		JBrowse link
G Psip1 PC4 and SRSF1 interacting protein 1 involved_in ISO
IEA
ISS 		(PMID:9885563)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:9885563 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:97,847,010...97,879,280
Ensembl chr 5:97,847,015...97,879,257 		JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:8940107) 		GO_Central
Ensembl
RGD		 PMID:8940107 GO_REF:0000033 GO_REF:0000107 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IEA
IBA 		GO_REF:0000104
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
Ensembl chr10:5,888,453...5,906,638 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO
IEA 		(PMID:8940107), (PMID:9885563)
GO_REF:0000107 		RGD
Ensembl		 PMID:8940107 PMID:9885563 GO_REF:0000107 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO
IEA 		(PMID:11684676)
GO_REF:0000107 		RGD
Ensembl		 PMID:11684676 GO_REF:0000107 NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778 		JBrowse link
mRNA splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:11158314)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:11158314 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426 		JBrowse link
G Celf2 CUGBP, Elav-like family member 2 involved_in
acts_upstream_of_or_within 		ISO
IBA 		(PMID:11158314)
GO_REF:0000033 		RGD
GO_Central		 PMID:11158314 GO_REF:0000033 NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333 		JBrowse link
G Celf3 CUGBP, Elav-like family member 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163 		JBrowse link
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO
IEA 		(PMID:11158314)
GO_REF:0000107 		RGD
Ensembl		 PMID:11158314 GO_REF:0000107 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
G Celf5 CUGBP, Elav-like family member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,225,787...8,250,322
Ensembl chr 7:8,225,825...8,250,322 		JBrowse link
G Celf6 CUGBP, Elav-like family member 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:59,975,095...60,006,060
Ensembl chr 8:59,975,088...60,005,041 		JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO
IEA 		(PMID:19641227)
GO_REF:0000107 		RGD
Ensembl		 PMID:19641227 GO_REF:0000107 NCBI chr 2:174,149,059...174,177,816
Ensembl chr 2:174,149,141...174,177,504 		JBrowse link
G Luc7l LUC7-like involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:15,273,340...15,307,131
Ensembl chr10:15,273,348...15,303,112 		JBrowse link
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000104
GO_REF:0000002 		GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 4:67,287,593...67,347,986
Ensembl chr 4:67,287,640...67,347,964 		JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:79,240,050...79,276,555
Ensembl chr10:79,240,563...79,276,538 		JBrowse link
G Luc7l3-ps2 LUC7-like 3 pre-mRNA splicing factor, pseudogene 2 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 5:49,653,487...49,655,419 JBrowse link
G Matcap1 microtubule associated tyrosine carboxypeptidase 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr19:33,158,053...33,166,784
Ensembl chr19:33,158,056...33,166,445 		JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (PMID:14671308), (PMID:16717059) RGD PMID:14671308 PMID:16717059 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368 		JBrowse link
G Nol3 nucleolar protein 3 involved_in ISS
ISO 		GO_REF:0000024
(PMID:10196175) 		UniProt
RGD		 PMID:10196175 GO_REF:0000024 NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250 		JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4124189 (PMID:10829067), (PMID:22802532)
GO_REF:0000107 		RGD
Ensembl		 PMID:10829067 PMID:22802532 GO_REF:0000107 NCBI chr 2:207,812,659...207,874,019
Ensembl chr 2:207,812,920...207,873,506 		JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531 		JBrowse link
G Rbmx RNA binding motif protein, X-linked IMP RGD PMID:19282290 RGD:2316827 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743 		JBrowse link
G Rbmxl1 Rbmx like 1 involved_in IDA PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859 		JBrowse link
G Setx senataxin involved_in ISO
IEA 		(PMID:19515850)
GO_REF:0000107 		RGD
Ensembl		 PMID:19515850 GO_REF:0000107 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO
IEA 		(PMID:9774382)
GO_REF:0000107 		RGD
Ensembl		 PMID:9774382 GO_REF:0000107 NCBI chr 5:148,088,759...148,102,964
Ensembl chr 5:148,088,823...148,101,768 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:12549914) 		UniProt
Ensembl
RGD		 PMID:12549914 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860 		JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20167602) 		UniProt
Ensembl
RGD		 PMID:20167602 GO_REF:0000024 GO_REF:0000107 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028 		JBrowse link
negative regulation of formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl13a ribosomal protein L13A involved_in ISO
IEA
ISS 		(PMID:17218275)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:17218275 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:95,609,374...95,612,557
Ensembl chr 1:95,609,370...95,620,463 		JBrowse link
positive regulation of telomerase catalytic core complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO
IEA 		(PMID:26586433)
GO_REF:0000107 		RGD
Ensembl		 PMID:26586433 GO_REF:0000107 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136 		JBrowse link
ribosomal large subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO
IEA 		(PMID:24120868)
GO_REF:0000107 		RGD
Ensembl		 PMID:24120868 GO_REF:0000107 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G Brix1 biogenesis of ribosomes BRX1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:59,450,608...59,461,486
Ensembl chr 2:59,450,614...59,461,495 		JBrowse link
G ENSRNOG00000068299 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr11:43,521,883...43,522,773 JBrowse link
G ENSRNOG00000070004 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:47,263,245...47,264,783 JBrowse link
G Mdn1 midasin AAA ATPase 1 involved_in ISO
IEA
IBA 		(PMID:27814492)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
InterPro
GO_Central		 PMID:27814492 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:47,055,435...47,190,426
Ensembl chr 5:47,055,447...47,186,332 		JBrowse link
G Mrto4 MRT4 homolog, ribosome maturation factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:151,601,780...151,608,533
Ensembl chr 5:151,601,780...151,608,287 		JBrowse link
G Nop2 NOP2 nucleolar protein involved_in ISO
IEA 		(PMID:24120868)
GO_REF:0000107 		RGD
Ensembl		 PMID:24120868 GO_REF:0000107 NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO
IEA
IBA 		(PMID:24120868)
GO_REF:0000107
GO_REF:0000104
GO_REF:0000033 		RGD
Ensembl
UniProt
GO_Central		 PMID:24120868 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902 		JBrowse link
G Rpf2 ribosome production factor 2 homolog involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:43,630,003...43,651,477
Ensembl chr20:43,629,951...43,651,509 		JBrowse link
G Rpf2l1 ribosome production factor 2 homolog like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:134,287,529...134,288,901
Ensembl chr 6:134,287,818...134,288,702 		JBrowse link
G Rpl10l ribosomal protein L10 like involved_in ISO
IEA 		(PMID:28502657)
GO_REF:0000107 		RGD
Ensembl		 PMID:28502657 GO_REF:0000107 NCBI chr 6:84,544,771...84,545,791
Ensembl chr 6:84,543,540...84,545,816 		JBrowse link
G Rpl11 ribosomal protein L11 involved_in ISO
IEA 		(PMID:24120868)
GO_REF:0000107 		RGD
Ensembl		 PMID:24120868 GO_REF:0000107 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599 		JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within ISO MGI:1856685 (PMID:15289434) RGD PMID:15289434 NCBI chr11:44,653,937...44,659,346
Ensembl chr11:44,653,937...44,659,370 		JBrowse link
G Rpl5 ribosomal protein L5 involved_in ISO
IBA 		(PMID:24120868)
GO_REF:0000033 		RGD
GO_Central		 PMID:24120868 GO_REF:0000033 NCBI chr14:1,843,856...1,850,301
Ensembl chr14:1,843,770...1,850,290 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in ISS
ISO 		GO_REF:0000024
(PMID:24120868) 		UniProt
RGD		 PMID:24120868 GO_REF:0000024 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
ribosomal small subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07005506.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:168,338,500...168,339,520 JBrowse link
G AABR07005886.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:186,877,655...186,881,977 JBrowse link
G ENSRNOG00000070133 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr14:94,350,859...94,351,251 JBrowse link
G Eral1 Era-like 12S mitochondrial rRNA chaperone 1 involved_in ISO
IBA
IEA
ISS 		(PMID:20604745), (PMID:28449065)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024 		RGD
GO_Central
Ensembl
UniProt		 PMID:20604745 PMID:28449065 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:62,961,725...62,968,747
Ensembl chr10:62,961,730...62,968,994 		JBrowse link
G Fau FAU ubiquitin like and ribosomal protein S30 fusion involved_in ISO (PMID:34318747) RGD PMID:34318747 NCBI chr 1:203,350,226...203,351,741
Ensembl chr 1:203,350,189...203,351,742
Ensembl chr 1:203,350,189...203,351,742
Ensembl chr 6:203,350,189...203,351,742 		JBrowse link
G LOC100911728 40S ribosomal protein S27-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:83,082,817...83,083,112
Ensembl chr13:83,082,817...83,083,056
Ensembl chr12:83,082,817...83,083,056 		JBrowse link
G LOC108348601 40S ribosomal protein S19 pseudogene involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:84,754,704...84,755,185
Ensembl chr17:84,754,643...84,755,185 		JBrowse link
G LOC108353425 40S ribosomal protein S27-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:68,089,694...68,089,966
Ensembl chr12:28,077,660...28,078,131 		JBrowse link
G LOC120095010 40S ribosomal protein S19-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:2,641,423...2,645,350
Ensembl chr10:2,642,638...2,643,075 		JBrowse link
G LOC120101650 40S ribosomal protein S14-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:112,838,842...112,839,309
Ensembl chr 3:112,838,854...112,839,309 		JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:100,843,691...100,846,838
Ensembl chr10:100,843,356...100,847,129 		JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640 		JBrowse link
G Rps10 ribosomal protein S10 IMP RGD PMID:3378620 RGD:2299075 NCBI chr20:5,694,313...5,698,922
Ensembl chr20:5,694,313...5,699,044
Ensembl chr 6:5,694,313...5,699,044
Ensembl chr 6:5,694,313...5,699,044 		JBrowse link
G Rps14 ribosomal protein S14 involved_in IMP
IBA
ISS 		GO_REF:0000033
GO_REF:0000024 		GO_Central
UniProt
RGD		 PMID:3378620 GO_REF:0000024 GO_REF:0000033, RGD:2299075 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166 		JBrowse link
G Rps15 ribosomal protein S15 involved_in IMP
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:3378620 GO_REF:0000033, RGD:2299075 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
Ensembl chr 7:9,416,004...9,417,450 		JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO
IBA 		(PMID:17053056)
GO_REF:0000033 		RGD
GO_Central		 PMID:17053056 GO_REF:0000033 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
Ensembl chr 7:80,480,951...80,486,508 		JBrowse link
G Rps19l3 ribosomal protein S19-like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:76,610,075...76,610,605
Ensembl chr 1:76,610,099...76,610,606
Ensembl chr 7:76,610,099...76,610,606 		JBrowse link
G Rps19l4 ribosomal protein S19 like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:51,365,005...51,365,544
Ensembl chr 7:102,435,666...102,436,278 		JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:3378620 RGD:2299075 NCBI chr10:13,747,316...13,749,165
Ensembl chr10:13,747,301...13,749,163 		JBrowse link
G Rps25 ribosomal protein s25 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 8:44,733,623...44,735,999
Ensembl chr 8:44,733,029...44,737,271
Ensembl chr 8:44,733,029...44,737,271 		JBrowse link
G Rps27 ribosomal protein S27 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:175,665,858...175,666,963
Ensembl chr 2:175,665,853...175,666,964
Ensembl chr12:175,665,853...175,666,964 		JBrowse link
G Rps27-ps7 ribosomal protein S27, pseudogene 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:186,877,655...186,877,923
Ensembl chr 1:186,877,655...186,881,977 		JBrowse link
G Rps27-ps9 ribosomal protein S27, pseudogene 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:128,028,275...128,028,907
Ensembl chr 1:128,028,275...128,028,628 		JBrowse link
G Rps27-ps9 ribosomal protein S27, pseudogene 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:128,028,275...128,028,628 JBrowse link
G Rps27l ribosomal protein S27-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:67,562,483...67,567,418
Ensembl chr 8:67,562,483...67,567,418
Ensembl chr12:67,562,483...67,567,418
Ensembl chr 2:67,562,483...67,567,418 		JBrowse link
G Rps27l3 ribosomal protein S27 like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:1,154,781...1,157,065
Ensembl chr 9:1,154,987...1,155,443
Ensembl chr12:1,154,987...1,155,443 		JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170 		JBrowse link
G Rps28-ps4 ribosomal protein S28, pseudogene 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:12,825,455...12,825,905
Ensembl chr20:12,825,606...12,825,815
Ensembl chr16:12,825,606...12,825,815 		JBrowse link
G Rps28-ps5 ribosomal protein S28, pseudogene 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:94,937,477...94,937,817
Ensembl chr14:94,937,482...94,937,815
Ensembl chr16:94,937,482...94,937,815 		JBrowse link
G Rps5 ribosomal protein S5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:73,538,776...73,543,073
Ensembl chr 1:73,538,776...73,543,073 		JBrowse link
G Rps6 ribosomal protein S6 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602 		JBrowse link
G Rpsa ribosomal protein SA involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr 8:128,728,761...128,732,736
Ensembl chr 8:119,851,225...119,855,247 		JBrowse link
G Rpsa-ps4 ribosomal protein SA, pseudogene 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:149,319,742...149,320,704
Ensembl chr  X:149,319,178...149,320,639 		JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817 		JBrowse link
RISC complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within ISO
IEA 		(PMID:23622242)
GO_REF:0000107 		RGD
Ensembl		 PMID:23622242 GO_REF:0000107 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO
IEA 		(PMID:19966796)
GO_REF:0000107 		RGD
Ensembl		 PMID:19966796 GO_REF:0000107 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19701182), (PMID:19966796), (PMID:23661684) 		Ensembl
RGD		 PMID:19701182 PMID:19966796 PMID:23661684 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO
IEA 		(PMID:19966796)
GO_REF:0000107 		RGD
Ensembl		 PMID:19966796 GO_REF:0000107 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO
IEA 		(PMID:19966796)
GO_REF:0000107 		RGD
Ensembl		 PMID:19966796 GO_REF:0000107 NCBI chr 5:138,780,446...138,825,898
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO
IEA
ISS 		(PMID:17495927)
GO_REF:0000107
GO_REF:0000104
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:17495927 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO
IEA 		(PMID:17531811)
GO_REF:0000107 		RGD
Ensembl		 PMID:17531811 GO_REF:0000107 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:15973356), (PMID:18178619), (PMID:23661684) RGD PMID:15973356 PMID:18178619 PMID:23661684 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO
IEA 		(PMID:23661684)
GO_REF:0000107 		RGD
Ensembl		 PMID:23661684 GO_REF:0000107 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in IEA
ISO 		GO_REF:0000104
GO_REF:0000107
(PMID:15973356), (PMID:18178619), (PMID:23661684) 		UniProt
Ensembl
RGD		 PMID:15973356 PMID:18178619 PMID:23661684 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:135,527,710...135,532,826
Ensembl chr 7:133,649,090...133,654,314 		JBrowse link
small-subunit processome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
spliceosomal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in ISO
IBA
ISS 		(PMID:12084575)
GO_REF:0000033
GO_REF:0000024 		RGD
GO_Central
UniProt		 PMID:12084575 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302
Ensembl chr 6:133,337,039...133,354,302 		JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO
IEA 		(PMID:18593880)
GO_REF:0000107 		RGD
Ensembl		 PMID:18593880 GO_REF:0000107 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996 		JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in ISO
IEA 		(PMID:24304693)
GO_REF:0000107 		RGD
Ensembl		 PMID:24304693 GO_REF:0000107 NCBI chr 4:114,481,613...114,519,268
Ensembl chr 4:114,481,607...114,519,962 		JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153 		JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:14,786,090...14,790,617
Ensembl chr 6:14,786,070...14,790,612 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO
IEA 		(PMID:23793891)
GO_REF:0000107 		RGD
Ensembl		 PMID:23793891 GO_REF:0000107 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO
IEA 		(PMID:16332694)
GO_REF:0000107 		RGD
Ensembl		 PMID:16332694 GO_REF:0000107 NCBI chr 1:216,966,104...216,977,549
Ensembl chr 1:207,541,595...207,552,662 		JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:18951082) 		UniProt
Ensembl
RGD		 PMID:18951082 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,420,220...108,449,481
Ensembl chr 8:108,420,222...108,449,430 		JBrowse link
G Rsrp1 arginine and serine rich protein 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:34042961) 		UniProt
RGD		 PMID:34042961 GO_REF:0000024 NCBI chr 5:147,147,774...147,151,523
Ensembl chr 5:147,147,784...147,151,523 		JBrowse link
G Scaf11 SR-related CTD-associated factor 11 involved_in ISO
IEA
IBA 		(PMID:9447963)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:9447963 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:127,571,678...127,624,089
Ensembl chr 7:127,574,463...127,624,101 		JBrowse link
G Sf3a2 splicing factor 3A subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISO (PMID:9845364) RGD PMID:9845364 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060 		JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:6,645,809...6,682,448
Ensembl chr20:6,645,809...6,682,134 		JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO
IEA
IBA 		(PMID:9472028)
GO_REF:0000107
(PMID:9446799)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:9446799 PMID:9472028 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:11,464,684...11,655,993
Ensembl chr 4:11,464,674...11,655,990 		JBrowse link
G Srpk3 SRSF protein kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:151,510,452...151,515,208
Ensembl chr  X:151,510,539...151,515,198 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:68,760,911...68,779,730
Ensembl chr 1:68,760,924...68,778,492 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in ISO
IEA
IBA 		(PMID:11350945)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
InterPro
GO_Central		 PMID:11350945 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:104,373,948...104,406,359
Ensembl chr 4:104,373,955...104,406,359 		JBrowse link
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 involved_in ISO (PMID:21041408) RGD PMID:21041408 NCBI chr  X:30,547,424...30,571,613
Ensembl chr  X:30,547,536...30,570,125 		JBrowse link
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
GO_REF:0000002
(PMID:18984161) 		UniProt
Ensembl
GO_Central
InterPro
RGD		 PMID:18984161 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661 		JBrowse link
G Coil coilin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:73,789,077...73,810,378
Ensembl chr10:73,789,488...73,810,393 		JBrowse link
G Ddx20 DEAD-box helicase 20 involved_in ISO
IEA
IBA 		(PMID:12067652), (PMID:18984161)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:193,158,761...193,168,484
Ensembl chr 2:193,158,823...193,166,774 		JBrowse link
G ENSRNOG00000063060 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 6:84,273,587...84,274,496 JBrowse link
G ENSRNOG00000063333 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:93,293,758...93,294,114 JBrowse link
G ENSRNOG00000063412 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:133,163,165...133,163,784 JBrowse link
G ENSRNOG00000064062 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 Ensembl chr19:33,454,456...33,455,388 JBrowse link
G ENSRNOG00000066758 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:14,995,412...14,996,454 JBrowse link
G ENSRNOG00000068015 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr  X:133,878,251...133,878,959 JBrowse link
G ENSRNOG00000068876 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 9:112,301,511...112,302,585 JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033
(PMID:12067652), (PMID:18984161), (PMID:31799625) 		UniProt
Ensembl
InterPro
GO_Central
RGD		 PMID:12067652 PMID:18984161 PMID:31799625 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153 		JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 involved_in ISO
IEA 		(PMID:12067652), (PMID:18984161)
GO_REF:0000002
GO_REF:0000107 		RGD
InterPro
Ensembl		 PMID:12067652 PMID:18984161 GO_REF:0000002 GO_REF:0000107 NCBI chr10:61,062,420...61,073,529
Ensembl chr10:61,066,425...61,073,431
Ensembl chr10:61,066,425...61,073,431 		JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 involved_in ISO
IEA
IBA 		(PMID:12067652), (PMID:18984161)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 GO_REF:0000107 NCBI chr10:42,295,729...42,342,902
Ensembl chr10:42,297,515...42,342,892 		JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 involved_in ISO
IEA
IBA 		(PMID:12067652), (PMID:18984161)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:14,786,090...14,790,617
Ensembl chr 6:14,786,070...14,790,612 		JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 involved_in ISO
IBA 		(PMID:12067652), (PMID:18984161)
GO_REF:0000033 		RGD
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr 1:79,215,054...79,228,769
Ensembl chr 1:79,214,919...79,224,994 		JBrowse link
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:78,269,910...78,270,681
Ensembl chr 4:78,269,888...78,270,669 		JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 involved_in ISO
IEA
IBA 		(PMID:12067652), (PMID:16434402), (PMID:18984161)
GO_REF:0000002
GO_REF:0000033 		RGD
InterPro
GO_Central		 PMID:12067652 PMID:16434402 PMID:18984161 GO_REF:0000002 GO_REF:0000033 NCBI chr  X:28,259,806...28,278,641
Ensembl chr  X:28,259,793...28,278,663 		JBrowse link
G LOC120099250 U1 small nuclear ribonucleoprotein C-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:135,673,708...135,678,865
Ensembl chr  X:135,677,760...135,678,704 		JBrowse link
G LOC120100604 small nuclear ribonucleoprotein G-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:186,400,521...186,402,953
Ensembl chr 2:186,400,857...186,401,087 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO
IEA 		(PMID:17709427)
GO_REF:0000107 		RGD
Ensembl		 PMID:17709427 GO_REF:0000107 NCBI chr15:31,938,927...31,948,318
Ensembl chr15:27,968,910...27,978,296 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISO
IEA
ISS 		(PMID:17709427)
GO_REF:0000107
GO_REF:0000104
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:17709427 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577 		JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in ISS
ISO 		GO_REF:0000024
(PMID:12077342) 		UniProt
RGD		 PMID:12077342 GO_REF:0000024 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in
NOT|involved_in 		ISO
IEA 		(PMID:14749385), (PMID:15314151)
GO_REF:0000107
(PMID:15314151) 		RGD
Ensembl		 PMID:14749385 PMID:15314151 GO_REF:0000107 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
(PMID:12067652), (PMID:18984161) 		UniProt
GO_Central
RGD		 PMID:12067652 PMID:18984161 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in ISO
IEA
ISS 		(PMID:18984161)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:18984161 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in ISO
IEA 		(PMID:8972845)
GO_REF:0000104 		RGD
UniProt		 PMID:8972845 GO_REF:0000104 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
Ensembl chr10:5,888,453...5,906,638 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in ISO
IEA 		(PMID:18984161)
GO_REF:0000107
GO_REF:0000104
GO_REF:0000002 		RGD
Ensembl
UniProt
InterPro		 PMID:18984161 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in ISO
IBA 		(PMID:18984161)
GO_REF:0000033 		RGD
GO_Central		 PMID:18984161 GO_REF:0000033 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
Ensembl chr20:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in ISO
IEA
IBA 		(PMID:18984161)
GO_REF:0000002
GO_REF:0000104
GO_REF:0000033 		RGD
InterPro
UniProt
GO_Central		 PMID:18984161 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpd3l1 small nuclear ribonucleoprotein D3 polypeptide like 1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002
GO_REF:0000104 		GO_Central
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr19:12,396,026...12,396,454
Ensembl chr19:12,396,026...12,396,454 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in ISO
IEA
IBA 		(PMID:18984161)
GO_REF:0000104
GO_REF:0000033 		RGD
UniProt
GO_Central		 PMID:18984161 GO_REF:0000033 GO_REF:0000104 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO
IEA 		(PMID:18984161)
GO_REF:0000107 		RGD
Ensembl		 PMID:18984161 GO_REF:0000107 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in ISO
IEA 		(PMID:18984161)
GO_REF:0000104 		RGD
UniProt		 PMID:18984161 GO_REF:0000104 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
Ensembl chr  X:118,812,252...118,819,826 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:12067652), (PMID:18984161) 		UniProt
Ensembl
GO_Central
RGD		 PMID:12067652 PMID:18984161 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in ISO (PMID:28263986) RGD PMID:28263986 NCBI chr 9:24,841,259...24,856,621
Ensembl chr 9:17,344,026...17,359,344 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO
ISS 		(PMID:35188580)
GO_REF:0000024 		RGD
UniProt		 PMID:35188580 GO_REF:0000024 NCBI chr 1:198,251,986...198,254,810
Ensembl chr 1:198,235,487...198,254,980 		JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO
IEA 		(PMID:10523320)
GO_REF:0000107 		RGD
Ensembl		 PMID:10523320 GO_REF:0000107 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20595234) 		UniProt
Ensembl
RGD		 PMID:20595234 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:216,966,104...216,977,549
Ensembl chr 1:207,541,595...207,552,662 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO
IEA 		(PMID:20595234)
GO_REF:0000107 		RGD
Ensembl		 PMID:20595234 GO_REF:0000107 NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:11867543)
GO_REF:0000002
GO_REF:0000107
(PMID:15257298), (PMID:20118938) 		RGD
InterPro
Ensembl		 PMID:11867543 PMID:15257298 PMID:20118938 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873 		JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in ISS
ISO 		GO_REF:0000024
(PMID:20118938) 		UniProt
RGD		 PMID:20118938 GO_REF:0000024 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IEA
ISO
ISS
IBA 		GO_REF:0000107
(PMID:15257298), (PMID:20118938)
GO_REF:0000024
GO_REF:0000033 		Ensembl
RGD
UniProt
GO_Central		 PMID:15257298 PMID:20118938 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO
IEA
IBA 		(PMID:20595234)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20595234 GO_REF:0000033 GO_REF:0000107 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO
IEA 		(PMID:12032085), (PMID:20595234)
GO_REF:0000107 		RGD
Ensembl		 PMID:12032085 PMID:20595234 GO_REF:0000107 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO
ISS 		(PMID:34131137)
GO_REF:0000024 		RGD
UniProt		 PMID:34131137 GO_REF:0000024 NCBI chr 1:198,251,986...198,254,810
Ensembl chr 1:198,235,487...198,254,980 		JBrowse link
G Usp4 ubiquitin specific peptidase 4 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20595234) 		UniProt
Ensembl
RGD		 PMID:20595234 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:109,035,402...109,079,382
Ensembl chr 8:109,036,099...109,080,427 		JBrowse link
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 involved_in ISO
IBA
IEA 		(PMID:35241646)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:35241646 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182 		JBrowse link
telomerase holoenzyme complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 acts_upstream_of_or_within ISO MGI:3849598 (PMID:15240872) RGD PMID:15240872 NCBI chr  X:157,751,651...157,757,796 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO
IEA 		(PMID:10197982)
GO_REF:0000107 		RGD
Ensembl		 PMID:10197982 GO_REF:0000107 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO
IEA 		(PMID:10197982)
GO_REF:0000107 		RGD
Ensembl		 PMID:10197982 GO_REF:0000107 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488 		JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:27510903) RGD PMID:27510903 NCBI chr16:22,837,583...22,868,320
Ensembl chr16:22,837,588...22,868,293 		JBrowse link
G Nvl nuclear VCP-like involved_in ISO (PMID:22226966) RGD PMID:22226966 NCBI chr13:92,851,023...92,906,749
Ensembl chr13:92,853,650...92,906,049 		JBrowse link
G Ptges3 prostaglandin E synthase 3 involved_in ISO
IEA
IBA 		(PMID:10197982)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10197982 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084 		JBrowse link
G Ptges3l1 prostaglandin E synthase 3-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:42,215,200...42,224,472
Ensembl chr  X:42,214,756...42,225,047 		JBrowse link
U2-type prespliceosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx42 DEAD-box helicase 42 involved_in ISO
IEA 		(PMID:36797247)
GO_REF:0000107 		RGD
Ensembl		 PMID:36797247 GO_REF:0000107 NCBI chr10:91,148,926...91,180,940
Ensembl chr10:91,148,254...91,180,939 		JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in ISS
ISO 		GO_REF:0000024
(PMID:36797247) 		UniProt
RGD		 PMID:36797247 GO_REF:0000024 NCBI chr17:8,942,070...8,988,440
Ensembl chr17:8,944,454...8,988,439 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in ISO
IEA 		(PMID:32494006), (PMID:34822310)
GO_REF:0000107 		RGD
Ensembl		 PMID:32494006 PMID:34822310 GO_REF:0000107 NCBI chr  X:134,935,426...134,949,607
Ensembl chr  X:134,935,426...134,949,607 		JBrowse link
G Sf3a1 splicing factor 3A subunit 1 involved_in ISO
IEA 		(PMID:10882114), (PMID:11533230)
GO_REF:0000107 		RGD
Ensembl		 PMID:10882114 PMID:11533230 GO_REF:0000107 NCBI chr14:83,254,971...83,275,720
Ensembl chr14:79,031,394...79,052,144 		JBrowse link
G Sf3a2 splicing factor 3A subunit 2 involved_in ISO
IEA
ISS 		(PMID:11533230)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:11533230 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530 		JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 involved_in ISO
IEA 		(PMID:11533230)
GO_REF:0000107 		RGD
Ensembl		 PMID:11533230 GO_REF:0000107 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular component organization or biogenesis 7114
        cellular component biogenesis 3560
          ribonucleoprotein complex biogenesis 570
            protein-RNA complex assembly 230
              90S preribosome assembly 1
              RISC complex assembly 10
              RITS complex assembly 0
              assembly of large subunit precursor of preribosome + 2
              cis assembly of pre-catalytic spliceosome 0
              cytoplasmic U snRNP body assembly 0
              formation of cytoplasmic translation initiation complex 19
              formation of quadruple SL/U4/U5/U6 snRNP 0
              formation of translation initiation ternary complex + 0
              formation of translation preinitiation complex + 10
              generation of catalytic spliceosome for first transesterification step 3
              generation of catalytic spliceosome for second transesterification step + 2
              mRNA branch site recognition 0
              mRNA splice site recognition + 32
              ribosomal large subunit assembly + 26
              ribosomal small subunit assembly + 40
              small nucleolar ribonucleoprotein complex assembly + 12
              small-subunit processome assembly 3
              spliceosomal complex assembly + 56
              spliceosomal conformational changes to generate catalytic conformation + 6
              spliceosomal snRNP assembly + 47
              spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) 1
              telomerase holoenzyme complex assembly + 9
              trans assembly of SL-containing precatalytic spliceosome 0
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular component organization or biogenesis 7114
        cellular component biogenesis 3560
          cellular component assembly 3215
            protein-containing complex assembly 1616
              protein-RNA complex assembly 230
                90S preribosome assembly 1
                RISC complex assembly 10
                RITS complex assembly 0
                assembly of large subunit precursor of preribosome + 2
                cis assembly of pre-catalytic spliceosome 0
                cytoplasmic U snRNP body assembly 0
                formation of cytoplasmic translation initiation complex 19
                formation of quadruple SL/U4/U5/U6 snRNP 0
                formation of translation initiation ternary complex + 0
                formation of translation preinitiation complex + 10
                generation of catalytic spliceosome for first transesterification step 3
                generation of catalytic spliceosome for second transesterification step + 2
                mRNA branch site recognition 0
                mRNA splice site recognition + 32
                ribosomal large subunit assembly + 26
                ribosomal small subunit assembly + 40
                small nucleolar ribonucleoprotein complex assembly + 12
                small-subunit processome assembly 3
                spliceosomal complex assembly + 56
                spliceosomal conformational changes to generate catalytic conformation + 6
                spliceosomal snRNP assembly + 47
                spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) 1
                telomerase holoenzyme complex assembly + 9
                trans assembly of SL-containing precatalytic spliceosome 0
paths to the root