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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-RNA complex assembly
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Accession:GO:0022618 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and RNA molecules to form a ribonucleoprotein complex.
Synonyms:exact_synonym: RNP complex assembly;   ribonucleoprotein complex assembly



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protein-RNA complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO MGI:2177650|MGI:5570192 (MGI:5546446|PMID:23936366) RGD PMID:23936366 MGI:5546446 NCBI chr 3:77,491,195...77,593,300
Ensembl chr 3:77,491,276...77,593,264
JBrowse link
G ENSRNOG00000069897 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 8:58,714,918...58,745,983 JBrowse link
G Rpl38 ribosomal protein L38 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
Ensembl chr14:99,701,362...99,705,004
Ensembl chr 3:99,701,362...99,705,004
Ensembl chr 2:99,701,362...99,705,004
Ensembl chr16:99,701,362...99,705,004
JBrowse link
G Rpl38-ps8 ribosomal protein L38, pseudogene 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,905,148...184,905,477
Ensembl chr 2:184,905,204...184,905,416
Ensembl chr16:184,905,204...184,905,416
Ensembl chr 3:184,905,204...184,905,416
Ensembl chr14:184,905,204...184,905,416
JBrowse link
G Rpl38l1 ribosomal protein L38 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:60,296,358...60,296,687
Ensembl chr 4:60,296,410...60,296,622
JBrowse link
G Rpl38l3 ribosomal protein L38 like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,969,607...68,969,819
Ensembl chr  X:68,969,607...68,969,819
JBrowse link
G Rpl38l4 ribosomal protein L38 like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:67,435,131...67,435,363
Ensembl chr18:67,435,134...67,435,346
JBrowse link
G Rpl38l6 ribosomal protein L38 like 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:143,285,738...143,286,894
Ensembl chr 3:143,286,247...143,286,435
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in ISO (PMID:19383767) RGD PMID:19383767 NCBI chr 4:133,213,357...133,305,586
Ensembl chr 4:133,213,361...133,305,586
JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (MGI:6490747|PMID:33230114) RGD PMID:33230114 MGI:6490747 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
JBrowse link
90S preribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl38 ribosomal protein L38 acts_upstream_of_or_within ISO (MGI:5014009|PMID:21529712) RGD PMID:21529712 MGI:5014009 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
Ensembl chr14:99,701,362...99,705,004
Ensembl chr 3:99,701,362...99,705,004
Ensembl chr 2:99,701,362...99,705,004
Ensembl chr16:99,701,362...99,705,004
JBrowse link
assembly of large subunit precursor of preribosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif6 eukaryotic translation initiation factor 6 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Eif6-ps1 eukaryotic translation initiation factor 6, pseudogene 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr14:81,584,117...81,585,052
Ensembl chr14:81,584,160...81,584,897
JBrowse link
box C/D snoRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000069014 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 1:17,520,592...17,522,080 JBrowse link
G Nopchap1 NOP protein chaperone 1 involved_in ISO
IBA
(PMID:33367824)
GO_REF:0000033
RGD
GO_Central
PMID:33367824 GO_REF:0000033 NCBI chr 7:20,353,626...20,359,685
Ensembl chr 7:20,353,634...20,359,690
JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 involved_in ISO
IBA
(PMID:17636026)
GO_REF:0000033
RGD
GO_Central
PMID:17636026 GO_REF:0000033 NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310
JBrowse link
G Pigw phosphatidylinositol glycan anchor biosynthesis, class W involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:69,746,996...69,782,656
Ensembl chr10:69,748,789...69,790,475
JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO
IEA
IBA
(PMID:17636026)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:17636026 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290
JBrowse link
G Pih1d2 PIH1 domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:50,966,885...50,976,901
Ensembl chr 8:50,966,885...50,975,656
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl1-ps1 RuvB-like AAA ATPase 1, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 involved_in ISO (MGI:5882914|PMID:11842104) RGD PMID:11842104 MGI:5882914 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IEA
(PMID:17636026)
GO_REF:0000107
RGD
Ensembl
PMID:17636026 GO_REF:0000107 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
JBrowse link
G Znhit3 zinc finger, HIT-type containing 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:69,775,885...69,790,471
Ensembl chr10:69,748,789...69,790,475
Ensembl chr10:69,748,789...69,790,475
JBrowse link
G Znhit6 zinc finger, HIT-type containing 6 involved_in ISO
IBA
(PMID:17636026)
GO_REF:0000033
RGD
GO_Central
PMID:17636026 GO_REF:0000033 NCBI chr 2:234,486,686...234,517,952
Ensembl chr 2:234,486,704...234,517,960
JBrowse link
box H/ACA snoRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
GO_REF:0000118
InterPro
GO_Central
TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr16:22,837,583...22,868,320
Ensembl chr16:22,837,588...22,868,293
JBrowse link
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:133,213,357...133,305,586
Ensembl chr 4:133,213,361...133,305,586
JBrowse link
formation of cytoplasmic translation initiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07041140.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:113,216,366...113,217,655 JBrowse link
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:143,374,652...143,395,460
Ensembl chr 3:143,373,686...143,395,432
JBrowse link
G Eif3a eukaryotic translation initiation factor 3, subunit A involved_in ISO
IBA
IEA
ISS
(PMID:17581632)
GO_REF:0000033
GO_REF:0000104
(MGI:3843422|PMID:17581632)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:17581632 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 MGI:3843422 NCBI chr 1:259,902,767...259,932,976
Ensembl chr 1:259,902,680...259,932,976
JBrowse link
G Eif3b eukaryotic translation initiation factor 3, subunit B involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:14,196,403...14,220,865
Ensembl chr12:14,196,403...14,220,886
JBrowse link
G Eif3c eukaryotic translation initiation factor 3, subunit C involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:181,134,604...181,152,489
Ensembl chr 1:181,134,604...181,152,493
JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D involved_in ISO
IEA
(MGI:3843422|PMID:17581632)
GO_REF:0000104
RGD
UniProt
PMID:17581632 GO_REF:0000104 MGI:3843422 NCBI chr 7:109,539,795...109,552,184
Ensembl chr 7:109,539,356...109,552,206
JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:74,339,848...74,372,483
Ensembl chr 7:74,339,828...74,373,096
JBrowse link
G Eif3el1 eukaryotic translation initiation factor 3, subunit E like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:73,774,491...73,775,984
Ensembl chr 1:73,774,487...73,776,003
JBrowse link
G Eif3f eukaryotic translation initiation factor 3, subunit F involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:162,934,220...162,943,204
Ensembl chr 1:162,934,212...162,943,204
JBrowse link
G Eif3g eukaryotic translation initiation factor 3, subunit G involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:19,429,728...19,433,760
Ensembl chr 8:19,429,643...19,433,808
JBrowse link
G Eif3h eukaryotic translation initiation factor 3, subunit H involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:83,091,037...83,174,451
Ensembl chr 7:83,091,039...83,174,451
JBrowse link
G Eif3i eukaryotic translation initiation factor 3, subunit I involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:141,935,135...141,942,589
Ensembl chr 5:141,935,044...141,942,676
JBrowse link
G Eif3j eukaryotic translation initiation factor 3, subunit J involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:108,985,103...109,007,341
Ensembl chr 3:108,985,118...109,007,953
JBrowse link
G Eif3k eukaryotic translation initiation factor 3, subunit K involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:84,260,127...84,270,051
Ensembl chr 1:84,259,673...84,270,302
JBrowse link
G Eif3l eukaryotic translation initiation factor 3, subunit L involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:110,652,565...110,663,614
Ensembl chr 7:110,627,107...110,663,614
JBrowse link
G Eif3m eukaryotic translation initiation factor 3, subunit M involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:91,424,754...91,442,358
Ensembl chr 3:91,416,325...91,442,392
JBrowse link
G Eif5 eukaryotic translation initiation factor 5 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:130,589,162...130,597,656
Ensembl chr 6:130,589,143...130,597,656
JBrowse link
G Eif5-ps1 eukaryotic translation initiation factor 5, pseudogene 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:53,566,365...53,569,726
Ensembl chr 3:53,566,757...53,568,645
JBrowse link
G ENSRNOG00000062798 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 7:46,723,073...46,724,355 JBrowse link
formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07041140.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:113,216,366...113,217,655 JBrowse link
G Denr density regulated reinitiation and release factor involved_in ISO
IBA
(PMID:20713520)
GO_REF:0000033
RGD
GO_Central
PMID:20713520 GO_REF:0000033 NCBI chr12:32,662,512...32,685,283
Ensembl chr12:32,662,516...32,683,843
JBrowse link
G Dhx29 DExH-box helicase 29 involved_in ISO (PMID:23047696) RGD PMID:23047696 NCBI chr 2:44,560,653...44,611,450
Ensembl chr 2:44,560,714...44,611,445
JBrowse link
G Eif2d eukaryotic translation initiation factor 2D involved_in ISO
IBA
IEA
(PMID:20713520)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000002
RGD
GO_Central
TreeGrafter
InterPro
PMID:20713520 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr13:42,615,901...42,637,107
Ensembl chr13:42,615,911...42,639,719
JBrowse link
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:143,374,652...143,395,460
Ensembl chr 3:143,373,686...143,395,432
JBrowse link
G Eif2s3 eukaryotic translation initiation factor 2 subunit gamma involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr  X:58,916,513...58,939,923
Ensembl chr  X:58,917,490...58,940,686
JBrowse link
G Eif2s3y eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr  Y:869,654...889,341
Ensembl chr  Y:869,689...889,340
JBrowse link
G Eif5 eukaryotic translation initiation factor 5 involved_in IDA
IEA
IMP
GO_REF:0000118 TreeGrafter
RGD
PMID:8464924 PMID:10805737 GO_REF:0000118, RGD:728212, RGD:10755758 NCBI chr 6:130,589,162...130,597,656
Ensembl chr 6:130,589,143...130,597,656
JBrowse link
G Eif5-ps1 eukaryotic translation initiation factor 5, pseudogene 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:53,566,365...53,569,726
Ensembl chr 3:53,566,757...53,568,645
JBrowse link
G ENSRNOG00000062798 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 7:46,723,073...46,724,355 JBrowse link
G ENSRNOG00000064316 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 2:99,681,894...99,682,562 JBrowse link
G Mcts1 MCTS1, re-initiation and release factor involved_in ISO
IBA
IEA
(PMID:20713520)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
RGD
GO_Central
TreeGrafter
Ensembl
PMID:20713520 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:117,350,723...117,362,504
Ensembl chr  X:117,350,889...117,362,504
JBrowse link
G Mcts2 MCTS family member 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:141,163,330...141,164,108 JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:344063 RGD:2299070 NCBI chr10:13,747,316...13,749,165
Ensembl chr10:13,747,301...13,749,163
JBrowse link
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xab2 XPA binding protein 2 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
JBrowse link
G Yju2 YJU2 splicing factor involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:789,603...799,505
Ensembl chr 9:789,606...799,496
JBrowse link
G Yju2l1 YJU2 splicing factor like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr16:21,108,807...21,109,887
Ensembl chr16:21,108,942...21,109,883
JBrowse link
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
InterPro
TreeGrafter
GO_Central
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
JBrowse link
G Prpf18 pre-mRNA processing factor 18 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979
JBrowse link
mitochondrial large ribosomal subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx28 DEAD-box helicase 28 involved_in ISO
IBA
(PMID:25683715)
GO_REF:0000033
RGD
GO_Central
PMID:25683715 GO_REF:0000033 NCBI chr19:33,909,799...33,911,729
Ensembl chr19:33,909,801...33,911,742
JBrowse link
G Dhx30 DExH-box helicase 30 involved_in ISO
IEA
ISS
(PMID:25683715)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:25683715 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:110,064,751...110,096,954
Ensembl chr 8:110,064,752...110,097,381
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:25683715)
Ensembl
UniProt
RGD
PMID:25683715 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Gm55359 predicted gene, 55359 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 7:111,786,726...111,792,148 JBrowse link
G LOC134479940 mitochondrial ribosome and complex I assembly factor AltMIEF1 involved_in ISO (PMID:31666358) RGD PMID:31666358
G Mief1 mitochondrial elongation factor 1 involved_in ISO (PMID:31666358) RGD PMID:31666358 NCBI chr 7:111,786,630...111,802,220
Ensembl chr 7:111,786,709...111,802,220
JBrowse link
G Mrm2 mitochondrial rRNA methyltransferase 2 involved_in ISO (PMID:35177605) RGD PMID:35177605 NCBI chr12:14,309,556...14,314,759
Ensembl chr12:14,251,941...14,314,118
JBrowse link
mRNA 3'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isy1 ISY1 splicing factor homolog involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 4:120,276,535...120,297,227
Ensembl chr 4:120,276,292...120,297,188
JBrowse link
G Slu7 SLU7 homolog, splicing factor involved_in ISO
ISS
(PMID:15728250)
PMID:15181151
RGD PMID:15728250 PMID:15181151 RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349
JBrowse link
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000066758 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:14,995,412...14,996,454 JBrowse link
G LOC120099250 U1 small nuclear ribonucleoprotein C-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:135,673,708...135,678,865 JBrowse link
G Prpf39 pre-mRNA processing factor 39 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825
JBrowse link
G Psip1 PC4 and SRSF1 interacting protein 1 involved_in ISO
IEA
ISS
(PMID:9885563)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:9885563 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:97,847,010...97,879,280
Ensembl chr 5:97,847,015...97,879,257
JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
(MGI:84585|PMID:8940107)
Ensembl
TreeGrafter
GO_Central
RGD
PMID:8940107 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:84585 NCBI chr12:27,109,607...27,179,941
Ensembl chr12:27,109,611...27,179,884
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:8940107), (PMID:9885563) RGD PMID:8940107 PMID:9885563 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336
JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in ISO (PMID:11684676) RGD PMID:11684676 NCBI chr 5:47,606,526...47,631,509
Ensembl chr 5:47,606,285...47,629,778
JBrowse link
mRNA splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 involved_in
acts_upstream_of_or_within
ISO
IEA
IBA
(PMID:11158314)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
(MGI:1930458|PMID:11158314)
RGD
TreeGrafter
GO_Central
Ensembl
PMID:11158314 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1930458 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:11158314)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(MGI:1930458|PMID:11158314)
RGD
GO_Central
TreeGrafter
Ensembl
PMID:11158314 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1930458 NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333
JBrowse link
G Celf3 CUGBP, Elav-like family member 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163
JBrowse link
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO (MGI:1930458|PMID:11158314) RGD PMID:11158314 MGI:1930458 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
JBrowse link
G Celf5 CUGBP, Elav-like family member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,225,787...8,250,322
Ensembl chr 7:8,225,825...8,250,322
JBrowse link
G Celf6 CUGBP, Elav-like family member 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:59,975,095...60,006,060
Ensembl chr 8:59,975,088...60,005,041
JBrowse link
G Khdc4 KH domain containing 4, pre-mRNA splicing factor involved_in ISO (PMID:19641227) RGD PMID:19641227 NCBI chr 2:174,149,059...174,177,816
Ensembl chr 2:174,149,141...174,177,504
JBrowse link
G Luc7l LUC7-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,273,340...15,307,131
Ensembl chr10:15,273,348...15,303,112
JBrowse link
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:67,287,593...67,347,986
Ensembl chr 4:67,287,640...67,347,964
JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:79,240,050...79,276,555
Ensembl chr10:79,240,563...79,276,538
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 acts_upstream_of_or_within ISO MGI:3052922 (MGI:2682447|PMID:14671308), (MGI:3655436|PMID:16717059) RGD PMID:14671308 PMID:16717059 MGI:2682447 MGI:3655436 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368
JBrowse link
G Nol3 nucleolar protein 3 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:10196175)
UniProt
Ensembl
RGD
PMID:10196175 GO_REF:0000024 GO_REF:0000107 NCBI chr19:33,154,061...33,158,250
Ensembl chr19:33,154,062...33,158,250
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:4124189 (MGI:1859428|PMID:10829067), (MGI:5430666|PMID:22802532)
GO_REF:0000107
RGD
Ensembl
PMID:10829067 PMID:22802532 GO_REF:0000107 MGI:1859428 MGI:5430666 NCBI chr 2:207,812,659...207,874,019
Ensembl chr 2:207,812,920...207,873,506
JBrowse link
G Puf60 poly-U binding splicing factor 60 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:107,782,799...107,793,759
Ensembl chr 7:107,782,770...107,794,531
JBrowse link
G Rbmx RNA binding motif protein, X-linked IMP RGD PMID:19282290 RGD:2316827 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743
JBrowse link
G Rbmxl1 Rbmx like 1 involved_in IDA PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr19:29,407,902...29,411,519
Ensembl chr19:29,407,912...29,412,859
JBrowse link
G Setx senataxin involved_in ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Srsf10 serine and arginine rich splicing factor 10 involved_in ISO (PMID:9774382) RGD PMID:9774382 NCBI chr 5:148,088,759...148,102,964
Ensembl chr 5:148,088,823...148,101,768
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:12549914)
UniProt
RGD
PMID:12549914 GO_REF:0000024 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860
JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20167602)
UniProt
RGD
PMID:20167602 GO_REF:0000024 NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028
JBrowse link
negative regulation of formation of translation preinitiation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl13a ribosomal protein L13A involved_in ISO
ISS
(PMID:17218275)
GO_REF:0000024
RGD
UniProt
PMID:17218275 GO_REF:0000024 NCBI chr 1:95,609,374...95,612,557
Ensembl chr 1:95,609,370...95,620,463
JBrowse link
positive regulation of telomerase catalytic core complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atr ATR serine/threonine kinase involved_in ISO (PMID:26586433) RGD PMID:26586433 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
ribosomal small subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07004292.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118
G AABR07005506.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:168,338,500...168,339,520 JBrowse link
G AABR07005886.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:186,877,655...186,881,977 JBrowse link
G AABR07015941.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr14:81,556,417...81,557,011 JBrowse link
G AABR07040944.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:107,697,440...107,698,439 JBrowse link
G ENSRNOG00000064104 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr13:67,169,866...67,205,293 JBrowse link
G ENSRNOG00000064563 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr17:50,898,352...50,899,760 JBrowse link
G ENSRNOG00000070133 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr14:94,350,859...94,351,251 JBrowse link
G Eral1 Era-like 12S mitochondrial rRNA chaperone 1 involved_in ISO
IEA
IBA
ISS
(PMID:20604745), (PMID:28449065)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
TreeGrafter
GO_Central
Ensembl
UniProt
PMID:20604745 PMID:28449065 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr10:62,961,725...62,968,747
Ensembl chr10:62,961,730...62,968,994
JBrowse link
G Fau FAU ubiquitin like and ribosomal protein S30 fusion involved_in ISO (PMID:34318747) RGD PMID:34318747 NCBI chr 1:203,350,226...203,351,741
Ensembl chr 1:203,350,189...203,351,742
JBrowse link
G LOC100911728 40S ribosomal protein S27-like involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr13:83,082,817...83,083,112
Ensembl chr13:83,082,817...83,083,056
JBrowse link
G LOC108348601 40S ribosomal protein S19 pseudogene involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:84,754,704...84,755,185
Ensembl chr17:84,754,643...84,755,185
JBrowse link
G LOC108353425 40S ribosomal protein S27-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:68,089,694...68,089,966 JBrowse link
G LOC120095010 40S ribosomal protein S19-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:2,641,423...2,645,350
Ensembl chr10:2,642,638...2,643,075
JBrowse link
G LOC120101650 40S ribosomal protein S14-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:112,838,842...112,839,309
Ensembl chr 3:112,838,854...112,839,309
JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr10:100,843,691...100,846,838
Ensembl chr10:100,843,356...100,847,129
JBrowse link
G Pwp2 PWP2, small subunit processome component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:10,499,332...10,512,965
Ensembl chr20:10,499,363...10,513,640
JBrowse link
G Rps10 ribosomal protein S10 IMP RGD PMID:3378620 RGD:2299075 NCBI chr20:5,694,313...5,698,922
Ensembl chr20:5,694,313...5,699,044
Ensembl chr 6:5,694,313...5,699,044
JBrowse link
G Rps14 ribosomal protein S14 involved_in IMP
IBA
IEA
ISS
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
GO_Central
TreeGrafter
UniProt
RGD
PMID:3378620 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118, RGD:2299075 NCBI chr18:54,227,854...54,232,638
Ensembl chr18:54,227,854...54,233,166
JBrowse link
G Rps15 ribosomal protein S15 involved_in IMP
IBA
GO_REF:0000033 GO_Central
RGD
PMID:3378620 GO_REF:0000033, RGD:2299075 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
JBrowse link
G Rps19 ribosomal protein S19 involved_in ISO
IEA
IBA
(PMID:17053056)
GO_REF:0000118
GO_REF:0000033
RGD
TreeGrafter
GO_Central
PMID:17053056 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:80,480,718...80,486,511
Ensembl chr 1:80,480,951...80,486,508
JBrowse link
G Rps19l3 ribosomal protein S19-like 3 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:76,610,075...76,610,605
Ensembl chr 1:76,610,099...76,610,606
JBrowse link
G Rps19l4 ribosomal protein S19 like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:51,365,005...51,365,544 JBrowse link
G Rps2 ribosomal protein S2 IMP RGD PMID:3378620 RGD:2299075 NCBI chr10:13,747,316...13,749,165
Ensembl chr10:13,747,301...13,749,163
JBrowse link
G Rps25 ribosomal protein s25 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 8:44,733,623...44,735,999
Ensembl chr 8:44,733,029...44,737,271
JBrowse link
G Rps27 ribosomal protein S27 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:175,665,858...175,666,963
Ensembl chr 2:175,665,853...175,666,964
JBrowse link
G Rps27l ribosomal protein S27-like involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 8:67,562,483...67,567,418
Ensembl chr 8:67,562,483...67,567,418
JBrowse link
G Rps27l2 ribosomal protein S27 like 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 1:128,028,275...128,028,907
Ensembl chr 1:128,028,275...128,028,628
JBrowse link
G Rps27l3 ribosomal protein S27 like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:1,154,781...1,157,065
Ensembl chr 9:1,154,987...1,155,443
JBrowse link
G Rps28 ribosomal protein S28 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
JBrowse link
G Rps28-ps4 ribosomal protein S28, pseudogene 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:12,825,455...12,825,905
Ensembl chr20:12,825,606...12,825,815
JBrowse link
G Rps28-ps5 ribosomal protein S28, pseudogene 5 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr14:94,937,477...94,937,817
Ensembl chr14:94,937,482...94,937,815
JBrowse link
G Rps5 ribosomal protein S5 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:73,538,776...73,543,073
Ensembl chr 1:73,538,776...73,543,073
JBrowse link
G Rps6 ribosomal protein S6 IMP RGD PMID:3378620 RGD:2299075 NCBI chr 5:101,371,716...101,374,576
Ensembl chr 5:101,371,136...101,374,602
Ensembl chr 5:101,371,136...101,374,602
JBrowse link
G Rpsa ribosomal protein SA involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
G Rpsa-ps4 ribosomal protein SA, pseudogene 4 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr  X:149,319,742...149,320,704
Ensembl chr  X:149,319,178...149,320,639
JBrowse link
G Rrp7a ribosomal RNA processing 7 homolog A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817
JBrowse link
RISC complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23622242)
GO_REF:0000107
RGD
Ensembl
PMID:23622242 GO_REF:0000107 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:16271387), (PMID:19701182), (PMID:19966796), (PMID:23661684)
Ensembl
RGD
PMID:16271387 PMID:19701182 PMID:19966796 PMID:23661684 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,118
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,780,446...138,825,898
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:15973356), (PMID:16271387), (PMID:18178619), (PMID:23661684) RGD PMID:15973356 PMID:16271387 PMID:18178619 PMID:23661684 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO
IEA
(PMID:23661684)
GO_REF:0000107
RGD
Ensembl
PMID:23661684 GO_REF:0000107 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347
JBrowse link
G Tarbp2 Tarbp2 subunit of RISC loading complex involved_in IEA
ISO
GO_REF:0000104
(PMID:15973356), (PMID:16271387), (PMID:18178619)
UniProt
RGD
PMID:15973356 PMID:16271387 PMID:18178619 GO_REF:0000104 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
small-subunit processome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
spliceosomal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crnkl1 crooked neck pre-mRNA splicing factor 1 involved_in ISO
IBA
IEA
ISS
(PMID:12084575)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
RGD
GO_Central
TreeGrafter
UniProt
PMID:12084575 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:133,338,593...133,354,329
Ensembl chr 3:133,337,039...133,354,302
Ensembl chr 6:133,337,039...133,354,302
JBrowse link
G Ddx39b DExD-box helicase 39B involved_in ISO
IEA
(PMID:18593880)
GO_REF:0000107
RGD
Ensembl
PMID:18593880 GO_REF:0000107 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996
JBrowse link
G ENSRNOG00000068450 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 4:20,872,522...20,874,013 JBrowse link
G ENSRNOG00000069795 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 4:21,024,128...21,025,619 JBrowse link
G Gcfc2 GC-rich sequence DNA-binding factor 2 involved_in ISO (PMID:24304693) RGD PMID:24304693 NCBI chr 4:114,481,613...114,519,268
Ensembl chr 4:114,481,607...114,519,962
JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153
JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:14,786,090...14,790,617
Ensembl chr 6:14,786,070...14,790,612
JBrowse link
G LOC102548514 crooked neck-like protein 1-like involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 6:1,140,615...1,142,918 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:23793891) RGD PMID:23793891 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO
IEA
(PMID:16332694)
GO_REF:0000107
RGD
Ensembl
PMID:16332694 GO_REF:0000107 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Rbm5 RNA binding motif protein 5 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:18951082)
UniProt
Ensembl
RGD
PMID:18951082 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,420,220...108,449,481
Ensembl chr 8:108,420,222...108,449,430
JBrowse link
G Rsrp1 arginine and serine rich protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:34042961)
UniProt
RGD
PMID:34042961 GO_REF:0000024 NCBI chr 5:147,147,774...147,151,523
Ensembl chr 5:147,147,784...147,151,523
JBrowse link
G Scaf11 SR-related CTD-associated factor 11 involved_in ISO
IBA
(PMID:9447963)
GO_REF:0000033
RGD
GO_Central
PMID:9447963 GO_REF:0000033 NCBI chr 7:127,571,678...127,624,089
Ensembl chr 7:127,574,463...127,624,101
JBrowse link
G Sf3a2 splicing factor 3A subunit 2 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300
JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISO (PMID:9845364) RGD PMID:9845364 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
JBrowse link
G Srpk1 SRSF protein kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:6,645,809...6,682,448
Ensembl chr20:6,645,809...6,682,134
JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO
IBA
(PMID:9472028)
GO_REF:0000033
(MGI:1195449|PMID:9446799)
RGD
GO_Central
PMID:9446799 PMID:9472028 GO_REF:0000033 MGI:1195449 NCBI chr 4:11,464,684...11,655,993
Ensembl chr 4:11,464,674...11,655,990
JBrowse link
G Srpk3 SRSF protein kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:151,510,452...151,515,208
Ensembl chr  X:151,510,539...151,515,198
JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:68,760,911...68,779,730
Ensembl chr 1:68,760,924...68,778,492
JBrowse link
G Usp39 ubiquitin specific peptidase 39 involved_in ISO (PMID:11350945) RGD PMID:11350945 NCBI chr 4:104,373,948...104,406,359
Ensembl chr 4:104,373,955...104,406,359
JBrowse link
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 involved_in ISO (PMID:21041408) RGD PMID:21041408 NCBI chr  X:30,547,424...30,571,613
Ensembl chr  X:30,547,536...30,570,125
JBrowse link
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
GO_REF:0000002
(PMID:18984161)
UniProt
GO_Central
TreeGrafter
InterPro
RGD
PMID:18984161 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661
JBrowse link
G Coil coilin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:73,789,077...73,810,378
Ensembl chr10:73,789,488...73,810,393
JBrowse link
G Ddx20 DEAD-box helicase 20 involved_in ISO
IBA
(PMID:12067652), (PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr 2:193,158,761...193,168,484
Ensembl chr 2:193,158,823...193,166,774
JBrowse link
G ENSRNOG00000063060 involved_in IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 Ensembl chr 6:84,273,587...84,274,496 JBrowse link
G ENSRNOG00000063288 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr14:32,635,911...32,636,620 JBrowse link
G ENSRNOG00000063333 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:93,293,758...93,294,114 JBrowse link
G ENSRNOG00000063412 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:133,163,165...133,163,784 JBrowse link
G ENSRNOG00000064062 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr19:33,454,456...33,455,388 JBrowse link
G ENSRNOG00000066758 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:14,995,412...14,996,454 JBrowse link
G ENSRNOG00000068015 involved_in IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 Ensembl chr  X:133,878,251...133,878,959 JBrowse link
G ENSRNOG00000068876 involved_in IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 Ensembl chr 9:112,301,511...112,302,585 JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:12067652), (PMID:18984161), (PMID:31799625)
UniProt
GO_Central
RGD
PMID:12067652 PMID:18984161 PMID:31799625 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153
JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 involved_in ISO
IBA
(PMID:12067652), (PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr10:61,062,420...61,073,529
Ensembl chr10:61,066,425...61,073,431
Ensembl chr10:61,066,425...61,073,431
JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 involved_in ISO
IBA
(PMID:12067652), (PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr10:42,295,729...42,342,902
Ensembl chr10:42,297,515...42,342,892
JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 involved_in ISO
IBA
(PMID:12067652), (PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr 6:14,786,090...14,790,617
Ensembl chr 6:14,786,070...14,790,612
JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 involved_in ISO
IBA
(PMID:12067652), (PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr 1:79,215,054...79,228,769
Ensembl chr 1:79,214,919...79,224,994
JBrowse link
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:78,269,910...78,270,681
Ensembl chr 4:78,269,888...78,270,669
JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 involved_in ISO
IBA
(PMID:12067652), (PMID:16434402), (PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:12067652 PMID:16434402 PMID:18984161 GO_REF:0000033 NCBI chr  X:28,259,806...28,278,641
Ensembl chr  X:28,259,793...28,278,663
JBrowse link
G Glod4 glyoxalase domain containing 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:61,077,535...61,095,876
Ensembl chr10:61,066,421...61,095,898
JBrowse link
G LOC108350623 small nuclear ribonucleoprotein F-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:155,116,497...155,116,945 JBrowse link
G LOC108352309 small nuclear ribonucleoprotein F-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:33,533,614...33,533,927
Ensembl chr11:33,533,512...33,533,871
JBrowse link
G LOC120099250 U1 small nuclear ribonucleoprotein C-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:135,673,708...135,678,865 JBrowse link
G LOC120100604 small nuclear ribonucleoprotein G-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:186,400,521...186,402,953
Ensembl chr 2:186,400,857...186,401,087
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926
JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO (PMID:17709427) RGD PMID:17709427 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISO
IEA
ISS
(PMID:17709427)
GO_REF:0000104
GO_REF:0000024
RGD
UniProt
PMID:17709427 GO_REF:0000024 GO_REF:0000104 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577
JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in ISS
ISO
GO_REF:0000024
(PMID:12077342)
UniProt
RGD
PMID:12077342 GO_REF:0000024 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in
NOT|involved_in
ISO (PMID:14749385), (PMID:15314151)
(PMID:15314151)
RGD PMID:14749385 PMID:15314151 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:12067652), (PMID:18984161)
UniProt
GO_Central
RGD
PMID:12067652 PMID:18984161 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060
JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in ISO
ISS
(PMID:18984161)
GO_REF:0000024
RGD
UniProt
PMID:18984161 GO_REF:0000024 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339
JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in ISO
IEA
(PMID:8972845)
GO_REF:0000104
RGD
UniProt
PMID:8972845 GO_REF:0000104 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in ISO
IBA
(PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:18984161 GO_REF:0000033 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in ISO
IBA
(PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:18984161 GO_REF:0000033 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in ISO
IBA
(PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:18984161 GO_REF:0000033 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978
JBrowse link
G Snrpd3l1 small nuclear ribonucleoprotein D3 polypeptide like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr19:12,396,026...12,396,454
Ensembl chr19:12,396,026...12,396,454
JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in ISO
IBA
(PMID:18984161)
GO_REF:0000033
RGD
GO_Central
PMID:18984161 GO_REF:0000033 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310
JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in ISO
IEA
(PMID:18984161)
GO_REF:0000104
RGD
UniProt
PMID:18984161 GO_REF:0000104 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118
JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
(PMID:12067652), (PMID:18984161)
UniProt
TreeGrafter
GO_Central
RGD
PMID:12067652 PMID:18984161 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in ISO (MGI:5904379|PMID:28263986) RGD PMID:28263986 MGI:5904379 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO
ISS
(PMID:35188580)
GO_REF:0000024
RGD
UniProt
PMID:35188580 GO_REF:0000024 NCBI chr 1:198,251,986...198,254,810
Ensembl chr 1:198,235,487...198,254,980
JBrowse link
G Zfp341 zinc finger protein 341 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:143,122,699...143,156,250
Ensembl chr 3:143,119,093...143,156,249
JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:145,057,368...145,079,838
Ensembl chr 3:145,057,458...145,080,166
JBrowse link
G Linc00176 long intergenic non-protein coding RNA 176 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:168,771,350...168,775,133
Ensembl chr 3:168,704,299...168,774,991
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:10523320) RGD PMID:10523320 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266
JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20595234)
UniProt
Ensembl
RGD
PMID:20595234 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO (PMID:20595234) RGD PMID:20595234 NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489
JBrowse link
G Prpf31 pre-mRNA processing factor 31 acts_upstream_of_or_within
involved_in
ISO (PMID:11867543)
(PMID:15257298), (PMID:20118938)
RGD PMID:11867543 PMID:15257298 PMID:20118938 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873
JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:20118938)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20118938 GO_REF:0000024 GO_REF:0000107 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625
JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IEA
ISO
ISS
IBA
GO_REF:0000107
(PMID:15257298), (PMID:20118938)
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
Ensembl
RGD
UniProt
TreeGrafter
GO_Central
PMID:15257298 PMID:20118938 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991
JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO
IBA
(PMID:20595234)
GO_REF:0000033
RGD
GO_Central
PMID:20595234 GO_REF:0000033 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:12032085), (PMID:20595234) RGD PMID:12032085 PMID:20595234 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO
IEA
ISS
(PMID:34131137)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:34131137 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:198,251,986...198,254,810
Ensembl chr 1:198,235,487...198,254,980
JBrowse link
G Usp4 ubiquitin specific peptidase 4 involved_in ISS
ISO
GO_REF:0000024
(PMID:20595234)
UniProt
RGD
PMID:20595234 GO_REF:0000024 NCBI chr 8:109,035,402...109,079,382
Ensembl chr 8:109,036,099...109,080,427
JBrowse link
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 involved_in ISO
IBA
IEA
(PMID:35241646)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:35241646 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182
JBrowse link
telomerase holoenzyme complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:10197982) RGD PMID:10197982 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO
IEA
(PMID:10197982)
GO_REF:0000107
RGD
Ensembl
PMID:10197982 GO_REF:0000107 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488
JBrowse link
G Naf1 nuclear assembly factor 1 ribonucleoprotein involved_in ISO (PMID:27510903) RGD PMID:27510903 NCBI chr16:22,837,583...22,868,320
Ensembl chr16:22,837,588...22,868,293
JBrowse link
G Ptges3 prostaglandin E synthase 3 involved_in ISO
IEA
IBA
(PMID:10197982)
(MGI:5819359|PMID:10197982)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
RGD
Ensembl
TreeGrafter
GO_Central
PMID:10197982 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5819359 NCBI chr 7:490,698...507,759
Ensembl chr 7:490,656...508,084
JBrowse link
G Ptges3l1 prostaglandin E synthase 3-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:42,215,200...42,224,472
Ensembl chr  X:42,214,756...42,225,047
JBrowse link
U2-type prespliceosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx42 DEAD-box helicase 42 involved_in ISO (PMID:36797247) RGD PMID:36797247 NCBI chr10:91,148,926...91,180,940
Ensembl chr10:91,148,254...91,180,939
JBrowse link
G Ddx46 DEAD-box helicase 46 involved_in ISS
ISO
GO_REF:0000024
(PMID:36797247)
UniProt
RGD
PMID:36797247 GO_REF:0000024 NCBI chr17:8,942,070...8,988,440
Ensembl chr17:8,944,454...8,988,439
JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in ISO (PMID:32494006), (PMID:34822310) RGD PMID:32494006 PMID:34822310 NCBI chr  X:134,935,426...134,949,607
Ensembl chr  X:134,935,426...134,949,607
JBrowse link
G Sf3a1 splicing factor 3A subunit 1 involved_in ISO (PMID:10882114), (PMID:11533230) RGD PMID:10882114 PMID:11533230 NCBI chr14:79,031,394...79,052,144
Ensembl chr14:79,031,394...79,052,144
JBrowse link
G Sf3a2 splicing factor 3A subunit 2 involved_in ISO
ISS
(PMID:11533230)
GO_REF:0000024
RGD
UniProt
PMID:11533230 GO_REF:0000024 NCBI chr 7:8,909,507...8,916,104
Ensembl chr 7:8,909,507...8,915,530
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 involved_in ISO (PMID:11533230) RGD PMID:11533230 NCBI chr 5:136,967,713...136,987,345
Ensembl chr 5:136,967,691...136,987,361
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20295
    cellular process 18772
      cellular component organization or biogenesis 7219
        cellular component biogenesis 3574
          ribonucleoprotein complex biogenesis 593
            protein-RNA complex assembly 225
              90S preribosome assembly 1
              RISC complex assembly 10
              RITS complex assembly 0
              assembly of large subunit precursor of preribosome + 2
              cis assembly of pre-catalytic spliceosome 0
              cytoplasmic U snRNP body assembly 0
              formation of cytoplasmic translation initiation complex 19
              formation of quadruple SL/U4/U5/U6 snRNP 0
              formation of translation initiation ternary complex + 0
              formation of translation preinitiation complex + 15
              generation of catalytic spliceosome for first transesterification step 3
              generation of catalytic spliceosome for second transesterification step + 2
              mRNA branch site recognition 0
              mRNA splice site recognition + 30
              ribosomal large subunit assembly + 9
              ribosomal small subunit assembly + 40
              small nucleolar ribonucleoprotein complex assembly + 15
              small-subunit processome assembly 3
              spliceosomal complex assembly + 57
              spliceosomal conformational changes to generate catalytic conformation + 6
              spliceosomal snRNP assembly + 54
              spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) 1
              telomerase holoenzyme complex assembly + 7
              trans assembly of SL-containing precatalytic spliceosome 0
Path 2
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  biological_process 20295
    cellular process 18772
      cellular component organization or biogenesis 7219
        cellular component biogenesis 3574
          cellular component assembly 3192
            protein-containing complex assembly 1624
              protein-RNA complex assembly 225
                90S preribosome assembly 1
                RISC complex assembly 10
                RITS complex assembly 0
                assembly of large subunit precursor of preribosome + 2
                cis assembly of pre-catalytic spliceosome 0
                cytoplasmic U snRNP body assembly 0
                formation of cytoplasmic translation initiation complex 19
                formation of quadruple SL/U4/U5/U6 snRNP 0
                formation of translation initiation ternary complex + 0
                formation of translation preinitiation complex + 15
                generation of catalytic spliceosome for first transesterification step 3
                generation of catalytic spliceosome for second transesterification step + 2
                mRNA branch site recognition 0
                mRNA splice site recognition + 30
                ribosomal large subunit assembly + 9
                ribosomal small subunit assembly + 40
                small nucleolar ribonucleoprotein complex assembly + 15
                small-subunit processome assembly 3
                spliceosomal complex assembly + 57
                spliceosomal conformational changes to generate catalytic conformation + 6
                spliceosomal snRNP assembly + 54
                spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) 1
                telomerase holoenzyme complex assembly + 7
                trans assembly of SL-containing precatalytic spliceosome 0
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