Gene: Prpf39 (pre-mRNA processing factor 39) Rattus norvegicus
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Symbol: Prpf39
Name: pre-mRNA processing factor 39
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A
AGR Description: Predicted to contribute to pre-mRNA 5'-splice site binding activity; predicted to be involved in mRNA 5'-splice site recognition; predicted to localize to the U1 snRNP, U2-type prespliceosome, and commitment complex; orthologous to human PRPF39 (pre-mRNA processing factor 39).
Merged Description: Predicted to contribute to pre-mRNA 5'-splice site binding activity; predicted to be involved in mRNA 5'-splice site recognition; predicted to localize to the U1 snRNP, U2-type prespliceosome, and commitment complex; orthologous to human PRPF39 (pre-mRNA processing factor 39); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC314171; pre-mRNA-processing factor 39; PRP39 pre-mRNA processing factor 39 homolog; PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae); PRP39 pre-mRNA processing factor 39 homolog (yeast)
Orthologs:
Homo sapiens (human) : PRPF39 (pre-mRNA processing factor 39)  HGNC  Alliance
Mus musculus (house mouse) : Prpf39 (pre-mRNA processing factor 39)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prpf39 (pre-mRNA processing factor 39)
Pan paniscus (bonobo/pygmy chimpanzee) : PRPF39 (pre-mRNA processing factor 39)
Canis lupus familiaris (dog) : PRPF39 (pre-mRNA processing factor 39)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prpf39 (pre-mRNA processing factor 39)
Sus scrofa (pig) : PRPF39 (pre-mRNA processing factor 39)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0686,785,793 - 86,810,806 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0696,274,772 - 96,299,877 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4686,385,975 - 86,412,072 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1686,395,686 - 86,413,568 (+)NCBI
Celera681,656,963 - 81,681,773 (+)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prpf39
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308702
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.