Celf2 (CUGBP, Elav-like family member 2)

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Gene: Celf2 (CUGBP, Elav-like family member 2) Rattus norvegicus

Analyze

Symbol:

Celf2

Name:

CUGBP, Elav-like family member 2

RGD ID:

68347

Description:

Enables mRNA 3'-UTR binding activity. Involved in post-transcriptional gene silencing. Predicted to be located in Flemming body and nucleoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human CELF2 (CUGBP Elav-like family member 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bruno-like protein 3; Brunol3; CUG triplet repeat RNA-binding protein 2; CUG triplet repeat, RNA binding protein 2; CUG triplet repeat,RNA-binding protein 2; CUG-BP- and ETR-3-like factor 2; CUGBP Elav-like family member 2; Cugbp- and Etr3-like factor 2; Cugbp2; elav-type RNA-binding protein 3; Etr3; Napor; neuroblastoma apoptosis-related RNA-binding protein; RNA-binding protein BRUNOL-3; RNA-binding protein Brunol3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CELF2 (CUGBP Elav-like family member 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Celf2 (CUGBP, Elav-like family member 2)	HGNC	NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Celf2 (CUGBP Elav-like family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CELF2 (CUGBP Elav-like family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CELF2 (CUGBP Elav-like family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Celf2 (CUGBP Elav-like family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CELF2 (CUGBP Elav-like family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CELF2 (CUGBP Elav-like family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Celf2 (CUGBP Elav-like family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CELF1 (CUGBP Elav-like family member 1)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CELF2 (CUGBP Elav-like family member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Celf2 (CUGBP, Elav-like family member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	celf2 (cugbp, Elav-like family member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	bru1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	bru2	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	etr-1	Alliance	DIOPT (InParanoid\|OMA\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	70,904,462 - 71,729,072 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	17	71,210,853 - 71,728,333 (+)	Ensembl
Rnor_6.0	17	75,259,269 - 75,660,154 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	75,352,389 - 75,654,951 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	76,413,318 - 77,317,256 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	82,708,354 - 83,025,139 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	17	82,719,196 - 83,036,540 (+)	NCBI
Celera	17	70,868,671 - 71,183,253 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental and Epileptic Encephalopathy 97 (ISO)

Experimental Liver Cirrhosis (ISO)

hypoparathyroidism-deafness-renal disease syndrome (ISO)

Prostatic Neoplasms (ISO)

schizophrenia (ISO)

Stevens-Johnson syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-colchicine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-butoxyethanol (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

cerium trichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

cisplatin (EXP,ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

diazinon (EXP)

dibutyl phthalate (ISO)

diethylstilbestrol (EXP)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

entinostat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

isotretinoin (ISO)

lithium chloride (ISO)

mercury dichloride (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mitoxantrone (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

nitroglycerin (EXP)

oxaliplatin (EXP)

p-menthan-3-ol (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

succimer (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (EXP)

topotecan (EXP)

tremolite asbestos (ISO)

tributylstannane (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

mRNA splice site selection (IBA,ISO)

post-transcriptional gene silencing (IMP)

regulation of alternative mRNA splicing, via spliceosome (IBA)

Cellular Component

cytoplasm (IBA,IEA,ISO)

Flemming body (ISO)

intracellular membrane-bounded organelle (ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO,ISS)

ribonucleoprotein complex (IBA,IEA)

Molecular Function

lncRNA binding (ISO)

mRNA 3'-UTR binding (IBA,IDA)

mRNA binding (IBA)

pre-mRNA binding (ISO)

RNA binding (IBA,IDA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Developmentally-regulated expression of mNapor encoding an apoptosis-induced ELAV-type RNA binding protein.	Choi DK, etal., Gene 1999 Sep 3;237(1):135-42.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Etr-r3/mNapor, encoding an ELAV-type RNA binding protein, is expressed in differentiating cells in the developing rodent forebrain.	Levers TE, etal., Mech Dev 2002 Mar;112(1-2):191-3.
4.	A positive feedback regulation of Heme oxygenase 1 by CELF1 in cardiac myoblast cells.	Liu Y, etal., Biochim Biophys Acta Gene Regul Mech. 2019 Feb;1862(2):209-218. doi: 10.1016/j.bbagrm.2018.11.006. Epub 2018 Nov 30.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Coupled mRNA stabilization and translational silencing of cyclooxygenase-2 by a novel RNA binding protein, CUGBP2.	Mukhopadhyay D, etal., Mol Cell 2003 Jan;11(1):113-26.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Region-specific alternative splicing in the nervous system: implications for regulation by the RNA-binding protein NAPOR.	Zhang W, etal., RNA 2002 May;8(5):671-85.

Additional References at PubMed

PMID:11158314	PMID:12477932	PMID:15830352	PMID:16095752	PMID:17855367	PMID:19075228	PMID:22681889	PMID:22871113	PMID:23661609	PMID:26166732	PMID:28763438	PMID:33574559

Genomics

Comparative Map Data

Celf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	70,904,462 - 71,729,072 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	17	71,210,853 - 71,728,333 (+)	Ensembl
Rnor_6.0	17	75,259,269 - 75,660,154 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	75,352,389 - 75,654,951 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	76,413,318 - 77,317,256 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	82,708,354 - 83,025,139 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	17	82,719,196 - 83,036,540 (+)	NCBI
Celera	17	70,868,671 - 71,183,253 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

CELF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	10,462,550 - 11,336,675 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	10	10,798,397 - 11,336,675 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	10,504,513 - 11,378,674 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	11,087,265 - 11,418,680 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	10	11,100,075 - 11,416,358	NCBI
Celera	10	10,975,495 - 11,308,195 (+)	NCBI
Cytogenetic Map	10	p14	NCBI
HuRef	10	10,966,021 - 11,297,937 (+)	NCBI		HuRef
CHM1_1	10	11,047,369 - 11,378,601 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	10,472,957 - 11,348,760 (+)	NCBI

Celf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	6,544,505 - 7,401,345 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	6,544,505 - 7,514,374 (-)	Ensembl
GRCm38	2	6,539,694 - 7,396,341 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	6,539,694 - 7,509,563 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	6,460,740 - 7,317,825 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	6,459,141 - 6,802,241 (-)	NCBI			mm8
Celera	2	6,477,339 - 7,334,016 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI

Celf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	26,992,734 - 27,374,850 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	27,064,497 - 27,374,850 (+)	NCBI	ChiLan1.0	ChiLan1.0

CELF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	10	10,465,313 - 11,330,504 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	10,793,682 - 11,330,504 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	10	10,478,500 - 11,346,255 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

CELF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	25,003,810 - 25,818,264 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	25,004,580 - 25,520,136 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	22,032,688 - 22,846,510 (-)	NCBI
ROS_Cfam_1.0	2	25,374,071 - 26,188,860 (-)	NCBI
ROS_Cfam_1.0 Ensembl	2	25,377,290 - 25,889,395 (-)	Ensembl
UMICH_Zoey_3.1	2	22,498,996 - 23,311,877 (-)	NCBI
UNSW_CanFamBas_1.0	2	23,346,244 - 24,156,578 (-)	NCBI
UU_Cfam_GSD_1.0	2	24,058,291 - 24,872,314 (-)	NCBI

Celf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	27,739,556 - 28,516,769 (-)	NCBI
SpeTri2.0	NW_004936484	3,904,726 - 4,401,560 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CELF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	60,506,482 - 61,084,861 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	60,504,925 - 60,867,631 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	66,358,580 - 66,405,357 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CELF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	10,534,623 - 11,395,516 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	9	11,080,404 - 11,388,136 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666051	16,023,662 - 16,890,330 (+)	NCBI	Vero_WHO_p1.0

Celf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	6,017,817 - 6,557,684 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624775	6,017,713 - 6,557,684 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D17Rat180

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,450,682 - 71,450,924 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,380,466 - 75,380,705	NCBI	Rnor6.0
Rnor_5.0	17	77,037,915 - 77,038,154	UniSTS	Rnor5.0
RGSC_v3.4	17	82,750,184 - 82,750,424	RGD	RGSC3.4
RGSC_v3.4	17	82,750,185 - 82,750,424	UniSTS	RGSC3.4
RGSC_v3.1	17	82,761,017 - 82,761,257	RGD
Celera	17	70,909,188 - 70,909,413	UniSTS
FHH x ACI Map	17	57.6699	RGD
FHH x ACI Map	17	57.6699	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BF402956

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,518,356 - 71,518,500 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,448,529 - 75,448,672	NCBI	Rnor6.0
Rnor_5.0	17	77,105,631 - 77,105,774	UniSTS	Rnor5.0
RH 3.4 Map	17	715.8	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BE095613

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,695,917 - 71,696,070 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,626,212 - 75,626,364	NCBI	Rnor6.0
Rnor_5.0	17	77,283,314 - 77,283,466	UniSTS	Rnor5.0
RGSC_v3.4	17	82,996,169 - 82,996,321	UniSTS	RGSC3.4
Celera	17	71,154,283 - 71,154,435	UniSTS
RH 3.4 Map	17	716.3	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BF388238

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,519,113 - 71,519,275 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,449,286 - 75,449,447	NCBI	Rnor6.0
Rnor_5.0	17	77,106,388 - 77,106,549	UniSTS	Rnor5.0
RGSC_v3.4	17	82,817,359 - 82,817,520	UniSTS	RGSC3.4
Celera	17	70,977,565 - 70,977,726	UniSTS
RH 3.4 Map	17	713.7	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BF400671

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,514,225 - 71,514,345 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,444,184 - 75,444,303	NCBI	Rnor6.0
Rnor_5.0	17	77,101,286 - 77,101,405	UniSTS	Rnor5.0
RGSC_v3.4	17	82,812,189 - 82,812,308	UniSTS	RGSC3.4
Celera	17	70,972,650 - 70,972,769	UniSTS
RH 3.4 Map	17	717.4	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AU048037

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,575,524 - 71,575,688 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,505,694 - 75,505,855	NCBI	Rnor6.0
Rnor_6.0	17	75,307,132 - 75,307,294	NCBI	Rnor6.0
Rnor_5.0	17	76,962,174 - 76,962,336	UniSTS	Rnor5.0
Rnor_5.0	17	77,162,796 - 77,162,957	UniSTS	Rnor5.0
RGSC_v3.4	17	82,875,780 - 82,875,942	UniSTS	RGSC3.4
Celera	17	71,033,989 - 71,034,150	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

RH137713

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,718,215 - 71,718,347 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,648,508 - 75,648,639	NCBI	Rnor6.0
Rnor_5.0	17	77,305,610 - 77,305,741	UniSTS	Rnor5.0
RGSC_v3.4	17	83,018,465 - 83,018,596	UniSTS	RGSC3.4
Celera	17	71,176,579 - 71,176,710	UniSTS
RH 3.4 Map	17	713.7	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BF390310

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,703,884 - 71,704,093 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,634,177 - 75,634,385	NCBI	Rnor6.0
Rnor_5.0	17	77,291,279 - 77,291,487	UniSTS	Rnor5.0
RGSC_v3.4	17	83,004,134 - 83,004,342	UniSTS	RGSC3.4
Celera	17	71,162,254 - 71,162,462	UniSTS
RH 3.4 Map	17	711.0	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BF390754

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,512,237 - 71,512,437 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,442,184 - 75,442,383	NCBI	Rnor6.0
Celera	17	70,970,649 - 70,970,848	UniSTS
RH 3.4 Map	17	717.2	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AI008532

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,513,758 - 71,513,940 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,443,717 - 75,443,898	NCBI	Rnor6.0
Rnor_5.0	17	77,100,819 - 77,101,000	UniSTS	Rnor5.0
RGSC_v3.4	17	82,811,722 - 82,811,903	UniSTS	RGSC3.4
Celera	17	70,972,183 - 70,972,364	UniSTS
RH 3.4 Map	17	716.7	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	53498828	82479847	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	57246843	82046127	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	59005649	77910000	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63640009	73951021	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	65703580	81153923	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	71003325	81153923	Rat

miRNA Target Status

Confirmed Target Of

miRNA Gene	Mature miRNA	Method Name	Result Type	Data Type	Support Type	PMID
Mir144	rno-miR-144-3p	Mirtarbase	external_info	Reporter assay;Western blot;qRT-PCR	Functional MTI	20708014
Mir451a	rno-miR-451-5p	Mirtarbase	external_info	Reporter assay;Western blot;qRT-PCR	Functional MTI	20708014

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	41
Interacting mature miRNAs:	52
Transcripts:	ENSRNOT00000023436
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	42	22	6	19	6	8	10	74	20	39	11	8
Low	1	1	35	35		35		1		15	2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001083586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_017197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF090695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF169013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ010351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ010386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC129096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000023436 ⟹ ENSRNOP00000023436

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,563,170 - 71,725,360 (+)	Ensembl
Rnor_6.0 Ensembl	17	75,352,389 - 75,654,951 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093949 ⟹ ENSRNOP00000095071

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,210,853 - 71,725,360 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095889 ⟹ ENSRNOP00000084295

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,422,788 - 71,728,333 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097332 ⟹ ENSRNOP00000083368

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,210,853 - 71,725,360 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101298 ⟹ ENSRNOP00000084524

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,409,620 - 71,685,732 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106925 ⟹ ENSRNOP00000077512

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,409,608 - 71,725,360 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113172 ⟹ ENSRNOP00000078975

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,210,853 - 71,728,333 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113911 ⟹ ENSRNOP00000093103

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,409,620 - 71,725,458 (+)	Ensembl

RefSeq Acc Id:

NM_001083586 ⟹ NP_001077055

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,409,610 - 71,724,658 (+)	NCBI
Rnor_6.0	17	75,259,269 - 75,654,950 (+)	NCBI
Rnor_5.0	17	76,413,318 - 77,317,256 (+)	NCBI
RGSC_v3.4	17	82,708,354 - 83,025,139 (+)	RGD
Celera	17	70,868,671 - 71,183,021 (+)	NCBI

Sequence:

show sequence

ATAACTTGTCGGCAAGGATTATTTCTTCCTAGTGAGTCTGCAGGAGCCCTTTTCTGTACTATTC
AGCATCTGAAAGAGAAGAGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
GAGAGAGAGAGGAGAGGGGGCGCATTAGTGAATAGCGACTGTGGCATTGATGTTTGAGCGCACT
TCTGAACTGGCTTTTGTTGAGACTATCAGTGTAGAAAGCATGCGCTGTCCCAAATCCGCTGTTA
CTATGAGAAATGAGGAGCTGCTTTTAAGTAACGGCACAGCCAACAAGATGAACGGAGCTTTGGA
TCATTCCGACCAGCCAGACCCAGATGCCATTAAGATGTTTGTCGGACAGATCCCTAGGTCCTGG
TCAGAAAAGGAGCTGAAAGAACTTTTTGAGCCTTATGGAGCTGTCTACCAGATCAACGTCCTCC
GGGACCGGAGTCAGAACCCTCCCCAGAGCAAAGGTTGTTGTTTCGTAACATTTTATACAAGAAA
AGCTGCACTTGAGGCCCAGAATGCACTGCACAATATTAAAACTTTACCTGGGATGCATCATCCC
ATTCAGATGAAACCTGCAGATAGTGAAAAGTCAAACGCTGTGGAAGACCGAAAATTGTTCATAG
GAATGGTTTCCAAGAAGTGTAACGAGAATGACATCAGAGTGATGTTTTCTCCCTTCGGTCAGAT
AGAAGAATGCCGGATTCTCCGGGGACCTGACGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTT
TCTACCAGGGCAATGGCACAGAATGCAATCAAAGCCATGCATCAGTCTCAGACCATGGAGGGCT
GCTCTTCACCTATCGTGGTGAAGTTCGCTGACACTCAGAAGGACAAGGAGCAAAGGCGCCTCCA
GCAGCAGCTTGCACAGCAGATGCAACAGCTCAACACTGCCACTTGGGGGAACCTGACAGGACTG
GGTGGACTTACCCCACAGTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACCTGGGTG
CATTCAGTGGCATTCAGCAAATGGCTGGCATGAATGCTTTACAGTTACAGAATCTGGCAACGCT
GGCTGCAGCTGCAGCTGCCGCCCAAACCTCAGCCACCAGCACCAATGCAAACCCTCTCTCCAGC
ACAAGCAGTGCCCTGGGGGCCCTCACAAGTCCCGTGGCTGCTTCAACCCCCAATTCTACTGCTG
GTGCAGCCATGAACTCCTTGACCTCTCTTGGGACTCTGCAAGGATTGGCTGGAGCCACTGTCGG
ATTGAATAATATTAATGCACTAGCAGGTATGGCGGCTCTGAATGGAGGACTTGGCGCCACAGGC
TTGACGAATGGTACGGCTGGCACCATGGACGCCCTCACGCAGGCCTACTCAGGAATTCAGCAGT
ACGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGAGCCTGCTGCAGCAGCAGAGCGCTGCAGG
CAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTCTTTATTTACCACCTTCCACAGGAGTTTGGA
GACCAGGACATTCTGCAGATGTTCATGCCCTTTGGAAATGTTATCTCTGCTAAAGTCTTCATTG
ACAAACAGACCAATCTGAGCAAGTGCTTTGGTTTTGTTAGCTATGACAATCCAGTCTCTGCACA
AGCTGCAATCCAGGCTATGAACGGCTTTCAGATCGGCATGAAACGCTTGAAGGTGCAGCTGAAG
CGCTCCAAAAACGACAGCAAACCTTACTGATCCTAACCCCAGAAGCTCCCTGCTCTTATTTTAG
CTTTCTT

hide sequence

RefSeq Acc Id:

NM_017197 ⟹ NP_058893

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,409,610 - 71,724,890 (+)	NCBI
Rnor_6.0	17	75,259,269 - 75,655,182 (+)	NCBI
Rnor_5.0	17	76,413,318 - 77,317,256 (+)	NCBI
RGSC_v3.4	17	82,708,354 - 83,025,139 (+)	RGD
Celera	17	70,868,671 - 71,183,253 (+)	RGD

Sequence:

show sequence

ATAACTTGTCGGCAAGGATTATTTCTTCCTAGTGAGTCTGCAGGAGCCCTTTTCTGTACTATTC
AGCATCTGAAAGAGAAGAGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
GAGAGAGAGAGGAGAGGGGGCGCATTAGTGAATAGCGACTGTGGCATTGATGTTTGAGCGCACT
TCTGAACTGGCTTTTGTTGAGACTATCAGTGTAGAAAGCATGCGCTGTCCCAAATCCGCTGTTA
CTATGAGAAATGAGGAGCTGCTTTTAAGTAACGGCACAGCCAACAAGATGAACGGAGCTTTGGA
TCATTCCGACCAGCCAGACCCAGATGCCATTAAGATGTTTGTCGGACAGATCCCTAGGTCCTGG
TCAGAAAAGGAGCTGAAAGAACTTTTTGAGCCTTATGGAGCTGTCTACCAGATCAACGTCCTCC
GGGACCGGAGTCAGAACCCTCCCCAGAGCAAAGGTTGTTGTTTCGTAACATTTTATACAAGAAA
AGCTGCACTTGAGGCCCAGAATGCACTGCACAATATTAAAACTTTACCTGGGATGCATCATCCC
ATTCAGATGAAACCTGCAGATAGTGAAAAGTCAAACGCTGTGGAAGACCGAAAATTGTTCATAG
GAATGGTTTCCAAGAAGTGTAACGAGAATGACATCAGAGTGATGTTTTCTCCCTTCGGTCAGAT
AGAAGAATGCCGGATTCTCCGGGGACCTGACGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTT
TCTACCAGGGCAATGGCACAGAATGCAATCAAAGCCATGCATCAGTCTCAGACCATGGAGGGCT
GCTCTTCACCTATCGTGGTGAAGTTCGCTGACACTCAGAAGGACAAGGAGCAAAGGCGCCTCCA
GCAGCAGCTTGCACAGCAGATGCAACAGCTCAACACTGCCACTTGGGGGAACCTGACAGGACTG
GGTGGACTTACCCCACAGTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAACCTGGGTG
CATTCAGTGGCATTCAGCAAATGGCTGGCATGAATGCTTTACAGTTACAGAATCTGGCAACGCT
GGCTGCAGCTGCAGCTGCCGCCCAAACCTCAGCCACCAGCACCAATGCAAACCCTCTCTCCAGC
ACAAGCAGTGCCCTGGGGGCCCTCACAAGTCCCGTGGCTGCTTCAACCCCCAATTCTACTGCTG
GTGCAGCCATGAACTCCTTGACCTCTCTTGGGACTCTGCAAGGATTGGCTGGAGCCACTGTCGG
ATTGAATAATATTAATGCACTAGCAGTTGCTCAAATGCTCTCAGGTATGGCGGCTCTGAATGGA
GGACTTGGCGCCACAGGCTTGACGAATGGTACGGCTGGCACCATGGACGCCCTCACGCAGGCCT
ACTCAGGAATTCAGCAGTACGCGGCAGCTGCACTGCCCACTTTGTACAGCCAGAGCCTGCTGCA
GCAGCAGAGCGCTGCAGGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTCTTTATTTACCAC
CTTCCACAGGAGTTTGGAGACCAGGACATTCTGCAGATGTTCATGCCCTTTGGAAATGTTATCT
CTGCTAAAGTCTTCATTGACAAACAGACCAATCTGAGCAAGTGCTTTGGTTTTGTTAGCTATGA
CAATCCAGTCTCTGCACAAGCTGCAATCCAGGCTATGAACGGCTTTCAGATCGGCATGAAACGC
TTGAAGGTGCAGCTGAAGCGCTCCAAAAACGACAGCAAACCTTACTGATCCTAACCCCAGAAGC
TCCCTGCTCTTATTTTAGCTTTCTTAGGGTAAGTCCCACAAGCCAGCCTGTTCTCAACAGGGAA
GGCAGAGGAGGGACCACAATGCCAACTTTTACCAAGAGAGACGGTTATTTTTACATTAAGGCCT
CCGTTTCTTCCACTAATGCCCCACCCAGTCTGCCATAATCAAAACCTGGGCTACCTTGTTCTTA
TTGAGTAAACCCCACCTCCAATTGTGCCACTGTATTCTCCTTGGTTTTGCAATTTGAATATCCT
T

hide sequence

RefSeq Acc Id:

XM_008771862 ⟹ XP_008770084

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,729,072 (+)	NCBI
Rnor_6.0	17	75,392,431 - 75,660,154 (+)	NCBI

Sequence:

show sequence

ACTTTTGGATCTTGTTTCTTCTCAACCACATTCTTTATTTGGATCGAATCACTATTTACCAAGT
AACGGCACAGCCAACAAGATGAACGGAGCTTTGGATCATTCCGACCAGCCAGACCCAGATGCCA
TTAAGATGTTTGTCGGACAGATCCCTAGGTCCTGGTCAGAAAAGGAGCTGAAAGAACTTTTTGA
GCCTTATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAGC
AAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAAGCTGCACTTGAGGCCCAGAATGCACTGC
ACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGATGAAACCTGCAGATAGTGAAAA
GTCAAACGCTGTGGAAGACCGAAAATTGTTCATAGGAATGGTTTCCAAGAAGTGTAACGAGAAT
GACATCAGAGTGATGTTTTCTCCCTTCGGTCAGATAGAAGAATGCCGGATTCTCCGGGGACCTG
ACGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACCAGGGCAATGGCACAGAATGCAAT
CAAAGCCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTTCACCTATCGTGGTGAAGTTCGCT
GACACTCAGAAGGACAAGGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGATGCAACAGC
TCAACACTGCCACTTGGGGGAACCTGACAGGACTGGGTGGACTTACCCCACAGTACCTGGCGCT
TCTGCAGCAGGCCACCTCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAATGGCTGGC
ATGAATGCTTTACAGTTACAGAATCTGGCAACGCTGGCTGCAGCTGCAGCTGCCGCCCAAACCT
CAGCCACCAGCACCAATGCAAACCCTCTCTCCAGCACAAGCAGTGCCCTGGGGGCCCTCACAAG
TCCCGTGGCTGCTTCAACCCCCAATTCTACTGCTGGTGCAGCCATGAACTCCTTGACCTCTCTT
GGGACTCTGCAAGGATTGGCTGGAGCCACTGTCGGATTGAATAATATTAATGCACTAGCAGTTG
CTCAAATGCTCTCAGGTATGGCGGCTCTGAATGGAGGACTTGGCGCCACAGGCTTGACGAATGG
TACGGCTGGCACCATGGACGCCCTCACGCAGGCCTACTCAGGAATTCAGCAGTACGCGGCAGCT
GCACTGCCCACTTTGTACAGCCAGAGCCTGCTGCAGCAGCAGAGCGCTGCAGGCAGCCAGAAGG
AAGGTCCAGAGGGGGCAAACCTCTTTATTTACCACCTTCCACAGGAGTTTGGAGACCAGGACAT
TCTGCAGATGTTCATGCCCTTTGGAAATGTTATCTCTGCTAAAGTCTTCATTGACAAACAGACC
AATCTGAGCAAGTGCTTTGGTTTTGTTAGCTATGACAATCCAGTCTCTGCACAAGCTGCAATCC
AGGCTATGAACGGCTTTCAGATCGGCATGAAACGCTTGAAGGTGCAGCTGAAGCGCTCCAAAAA
CGACAGCAAACCTTACTGATCCTAACCCCAGAAGCTCCCTGCTCTTATTTTAGCTTTCTTAGGA
CATCTTCATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTC
ATCGTCCCGTCATTGTTTCTGATGTCTTTCTGACCTCACGTCATATTTGGTTCTCTCCTACTGA
CCTTTGATCTAGTTTTGACCTTTGAAATTTGCATGTGACCTCATCTCGCTATGAATTCTGGGAA
GTCAATGTGAAAAACATTGCTGCATTCATGCAAGACTGAAATTATTAGACAAATTATAGAAAAC
AAAACCTGTGGCTAAAATGTTTCTTTCTTATTTTTTTTTTCTTTTCATAAAACAGACTTGAAAG
TATTACACAGGGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACA
CAGAATGTTGGTTTCTAACAGACTACTTCCAAAAACAGTTTGAGAAAAAAAAACTGTCTGATTT
TAAGTCTCTAGAGGTCTGTAATAGTTTTTACATTTTTCAGGCAGTGTAAAGTTTTTGATAAGGC
CATTTTACGTGGCTCACTTTCTCATTAAGATATATATAGAGAACCACTTTTTGTAGATTAGTAT
AAGAAAATATTTACCCTGTTTTGGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGA
CTCACAGTTAGACAATCCATGGTTTAATGCACATGAAATTACCTATATTTTATACTGTTCCAAT
GTACAGGAGAAAGCTACTGTAAACTGCGTCATGTCGGTGCTTCTGTGGATTAAGTTGTGGTCTC
ATCATGAGTCTTAAGGTCTTAATGTTATTTGTTGATAAGACAAGCTTAGAATTGGTTTACTTAT
AACAAAAAGAATTTCAAAAAAAAAAAAGTTGTTTGCTTAAAAAAAAAATTTAATGTGAGAAAAA
AAAAAAAACAAACTATTCCAGAATAAGTTTGTGTTGGCTTGAGAAAGCATTGATGTCACCTTTT
TTATTGTGGACTATTAGATGTGTTTGTGTTCAGCAAAATGTGATCTGTTTTTGTTTTTTCTTTT
AAAGAAAAAAAAGTGAAAACTATCTAGTGCCAAATTCCAAAGGTACTTCCTTCCTAGAGCTCCG
CGTGTTTCCTGTGAGAAGTAATTTGATAACATGGTATTTTATTATGTGTTTTGTATAAATCCCT
AATATTTAAAACAAAAAAAAAAAAAGGTTACAAAGTTTGTTAACTTGCTACTCCGTGGTCTTGT
TGCCTGAAATTGTTATTGTTCGTTATTTCTCTATGCTGTTTTGTAAGACATTGTATAAGTGCCC
GTGTGTTACTTTTCTAATCACCCTCCACATCGATGCTATGACAGCAACCCTCACAATGTATTCT
CTTCACAATGTCTGCAAACCTCCAAGGTGAGAAAGTCCTGAACTTTTAACCCTTTCTACCCAGA
GCTATCTGGAATGTTGGTAACTTTTTATACTGTCATCCTTGGGTTTCTTTTGGGGTGTTTAGAT
TTTTTTTCTCCATTTGTATCTTCTGAGTTTTTTGTTTTTTGAGACACCCACCCACCCAAAAACT
CTTAAGTCTTTTTCCTAAACCATGTTTTATTTTTCTTTTTTATCCCCCCTCTTCCTTATTATTA
TCCTATGCTCCTTTAGTTTAAATGTAAGAGATTGAGCAAATCCTATGAAGGTAAACGTAGGTAG
ATTTTTAGCCCCTACACAAACCCTAAAGACAATGTCTGCTTTTCGAGATGGGGTTTCATGGTAT
GTCCTAGTGTACAATATTTTTATACACCCTGGAGTTAATGGCTTTTTTTGGTGGTCTACTCTTT
CAAGAAACGTTGCTTTTGTTTCTTAAACACCCCTATGTAATGCTGAGTCAGTCATTCCGCCCGG
GATTCTCAGACTCCTGTGGACACCTGAATGAGAAAGGTGTCTTCACGCAAATCCCTCAGGCCTT
TCCCTGCCTCTCTGGGTCCCTAGGGGGTTTTGATCTTTAGGTGAACACATTTCAAGTGGCTGGC
CATGTAAGAGGAGATCAGAGCTGCTCTTCACCACAGTTACTAACCAAATACCAGGACTAGATCC
TGCTGTCATTTTTGAAAGTGCCATATTCCTCTGAGTCTGGCTTCTTATGAGCAGATGTCTTGTT
CTCACAGACCCCAATGTCCTACCTACAGTCCCAGCACTCGCCCAGTCTCTGGGAAAACAAACCC
TGCAAGCTCCTGGTCTCAGCTCCCCTTCCTTCTCACCCTGCCTCCATTTGGTTTAATGTGTGTG
TGATTGTGATAGCCCTGAGATGGAAAGGATTAGCCTCTCACAATGCAAAAAAAAAAAAAATTCC
CTCCTTACAGCACGAGCACTTCCTGCAATGCCGCGGTCTGTGTCCCCCACACCTGTTTACCACT
GCCGGGGCCTTCTTCGTCCTCGAGGGCTATTTTGTACTTCCGCAGCACTCAGCGCAGTAACAGT
GACCACACATTTCTCAGTCTCTCTGTGGTGGTGTAGGCACACATGTAGACACACAAGACAACTC
CAGTCGTATTTCATAGACCGTCTCGTTCAGAATCTATTCATTTACCAACGGCATAAATGACAAC
AACAAAGAAAATTCTTGAATTTTTCCCCCATGGAAGCAAACCGTCGTCCTTCCTCTTAATCCAC
CTGCGGCCGCAGAGGCTCGGGCCAGGCAGGTACTTTCTGTTGAGTGCTTCTGACTTTGCAGGCA
ACCAAGACAGTACATTGAGGGGGAGGTTTTTGGTTTTGCATGTTTCATTGTTAGAAAGATAGCC
TTCCTCAGAGACAAACTGTCCTTTATCTCTCAGTATCAAACGGAAAAAGCTGCAAGGGTGCACA
GGGCCTGTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAAAAATCACGTGTAAAGCATA
GACTTTAAAACTCACTCAGAGACTCTGATTGACGGCACCTCCAAGGTGTGACAGCTCATCTTTC
CTTCACCGCAGGGGTTCTAGGTCCTTGGCTTGTGCTACTCTGGAATCATTTACTGTTTCTGTTT
TTATTATCTTAAGTGCTAATTAAAAAAAAAATAAAACTTAAAAAAATGTAGTTTCATTACCTTT
TGAATAATGTCATACAAAAAACTGTATTTGTGTTTTTGTGCTGTGGGAATTGTTGTTTGTAGAT
TAATAATACCATTTTGTTTAGAACTACAAAATAGTTTTTAAATATTGTCTGAGAAAAGCCAAAG
TTAATGCAACCTAGTGGAAACTGTAAGACCATTTGAGTATTGTTTCTGTTGTATTGGTGCATTT
GGATTTTGTTGTTTGATGGAATTTGAGCCAAAAAACAAAAACGCAGGCTTTCCTATTTCTACAG
CCGATTGTCCTTATGCATTTTGTACCAGTGGGATTTTTTATACTGGAGATTAAAAAAAATGGAA
ATTTTTGTGGCTTACTCTCGTGGGCCCCCTGACAATGACTGATTTCAAGTTTGATTTCTGGTTG
ATAGAAAGAGAGTTGCTTTCCTTTTAAGAATTAAAAACTTTGGCTTGATTTCTTTTTTTCCCTT
TGCTTATATCTAGCATTAGAATTTTGTCTTAAAATACAGCGGTAAGTTTCACTCTTTATTCTGT
ACTGTGCAGTTACACAATAAGATAATTAGATTTAGAAGTACTCAGTCACTTTAAGTGGATAAAT
GTATTAGTTAAACTTTAGGAGTTTGCTTTTTGCTGTTTAGATCGAAGTTTTTTCTGACCCTTCT
GTCCTCATTGTGAACATAACCGTGTAGTTGAAACAGTCAGACTTATTTTTGTAATGTATGTTAT
TGTGTGATGCGGTTTTTTGCTTCTGTCTCCAATATTAAACCATTTTCCTAATA

hide sequence

RefSeq Acc Id:

XM_008771863 ⟹ XP_008770085

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,729,072 (+)	NCBI
Rnor_6.0	17	75,392,431 - 75,660,154 (+)	NCBI

Sequence:

show sequence

ACTTTTGGATCTTGTTTCTTCTCAACCACATTCTTTATTTGGATCGAATCACTATTTACCAAGT
AACGGCACAGCCAACAAGATGAACGGAGCTTTGGATCATTCCGACCAGCCAGACCCAGATGCCA
TTAAGATGTTTGTCGGACAGATCCCTAGGTCCTGGTCAGAAAAGGAGCTGAAAGAACTTTTTGA
GCCTTATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAGC
AAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAAGCTGCACTTGAGGCCCAGAATGCACTGC
ACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGATGAAACCTGCAGATAGTGAAAA
GTCAAACGCTGTGGAAGACCGAAAATTGTTCATAGGAATGGTTTCCAAGAAGTGTAACGAGAAT
GACATCAGAGTGATGTTTTCTCCCTTCGGTCAGATAGAAGAATGCCGGATTCTCCGGGGACCTG
ACGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACCAGGGCAATGGCACAGAATGCAAT
CAAAGCCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTTCACCTATCGTGGTGAAGTTCGCT
GACACTCAGAAGGACAAGGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGATGCAACAGC
TCAACACTGCCACTTGGGGGAACCTGACAGGACTGGGTGGACTTACCCCACAGTACCTGGCGCT
TCTGCAGCAGGCCACCTCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAATGGCTGGC
ATGAATGCTTTACAGTTACAGAATCTGGCAACGCTGGCTGCAGCTGCAGCTGCCGCCCAAACCT
CAGCCACCAGCACCAATGCAAACCCTCTCTCCAGCACAAGCAGTGCCCTGGGGGCCCTCACAAG
TCCCGTGGCTGCTTCAACCCCCAATTCTACTGCTGGTGCAGCCATGAACTCCTTGACCTCTCTT
GGGACTCTGCAAGGATTGGCTGGAGCCACTGTCGGATTGAATAATATTAATGCACTAGCAGGTA
CCATAAGCAGTATGGCGGCTCTGAATGGAGGACTTGGCGCCACAGGCTTGACGAATGGTACGGC
TGGCACCATGGACGCCCTCACGCAGGCCTACTCAGGAATTCAGCAGTACGCGGCAGCTGCACTG
CCCACTTTGTACAGCCAGAGCCTGCTGCAGCAGCAGAGCGCTGCAGGCAGCCAGAAGGAAGGTC
CAGAGGGGGCAAACCTCTTTATTTACCACCTTCCACAGGAGTTTGGAGACCAGGACATTCTGCA
GATGTTCATGCCCTTTGGAAATGTTATCTCTGCTAAAGTCTTCATTGACAAACAGACCAATCTG
AGCAAGTGCTTTGGTTTTGTTAGCTATGACAATCCAGTCTCTGCACAAGCTGCAATCCAGGCTA
TGAACGGCTTTCAGATCGGCATGAAACGCTTGAAGGTGCAGCTGAAGCGCTCCAAAAACGACAG
CAAACCTTACTGATCCTAACCCCAGAAGCTCCCTGCTCTTATTTTAGCTTTCTTAGGACATCTT
CATGCCCGTTAGTCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTC
CCGTCATTGTTTCTGATGTCTTTCTGACCTCACGTCATATTTGGTTCTCTCCTACTGACCTTTG
ATCTAGTTTTGACCTTTGAAATTTGCATGTGACCTCATCTCGCTATGAATTCTGGGAAGTCAAT
GTGAAAAACATTGCTGCATTCATGCAAGACTGAAATTATTAGACAAATTATAGAAAACAAAACC
TGTGGCTAAAATGTTTCTTTCTTATTTTTTTTTTCTTTTCATAAAACAGACTTGAAAGTATTAC
ACAGGGATTGGCATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAAT
GTTGGTTTCTAACAGACTACTTCCAAAAACAGTTTGAGAAAAAAAAACTGTCTGATTTTAAGTC
TCTAGAGGTCTGTAATAGTTTTTACATTTTTCAGGCAGTGTAAAGTTTTTGATAAGGCCATTTT
ACGTGGCTCACTTTCTCATTAAGATATATATAGAGAACCACTTTTTGTAGATTAGTATAAGAAA
ATATTTACCCTGTTTTGGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACA
GTTAGACAATCCATGGTTTAATGCACATGAAATTACCTATATTTTATACTGTTCCAATGTACAG
GAGAAAGCTACTGTAAACTGCGTCATGTCGGTGCTTCTGTGGATTAAGTTGTGGTCTCATCATG
AGTCTTAAGGTCTTAATGTTATTTGTTGATAAGACAAGCTTAGAATTGGTTTACTTATAACAAA
AAGAATTTCAAAAAAAAAAAAGTTGTTTGCTTAAAAAAAAAATTTAATGTGAGAAAAAAAAAAA
AACAAACTATTCCAGAATAAGTTTGTGTTGGCTTGAGAAAGCATTGATGTCACCTTTTTTATTG
TGGACTATTAGATGTGTTTGTGTTCAGCAAAATGTGATCTGTTTTTGTTTTTTCTTTTAAAGAA
AAAAAAGTGAAAACTATCTAGTGCCAAATTCCAAAGGTACTTCCTTCCTAGAGCTCCGCGTGTT
TCCTGTGAGAAGTAATTTGATAACATGGTATTTTATTATGTGTTTTGTATAAATCCCTAATATT
TAAAACAAAAAAAAAAAAAGGTTACAAAGTTTGTTAACTTGCTACTCCGTGGTCTTGTTGCCTG
AAATTGTTATTGTTCGTTATTTCTCTATGCTGTTTTGTAAGACATTGTATAAGTGCCCGTGTGT
TACTTTTCTAATCACCCTCCACATCGATGCTATGACAGCAACCCTCACAATGTATTCTCTTCAC
AATGTCTGCAAACCTCCAAGGTGAGAAAGTCCTGAACTTTTAACCCTTTCTACCCAGAGCTATC
TGGAATGTTGGTAACTTTTTATACTGTCATCCTTGGGTTTCTTTTGGGGTGTTTAGATTTTTTT
TCTCCATTTGTATCTTCTGAGTTTTTTGTTTTTTGAGACACCCACCCACCCAAAAACTCTTAAG
TCTTTTTCCTAAACCATGTTTTATTTTTCTTTTTTATCCCCCCTCTTCCTTATTATTATCCTAT
GCTCCTTTAGTTTAAATGTAAGAGATTGAGCAAATCCTATGAAGGTAAACGTAGGTAGATTTTT
AGCCCCTACACAAACCCTAAAGACAATGTCTGCTTTTCGAGATGGGGTTTCATGGTATGTCCTA
GTGTACAATATTTTTATACACCCTGGAGTTAATGGCTTTTTTTGGTGGTCTACTCTTTCAAGAA
ACGTTGCTTTTGTTTCTTAAACACCCCTATGTAATGCTGAGTCAGTCATTCCGCCCGGGATTCT
CAGACTCCTGTGGACACCTGAATGAGAAAGGTGTCTTCACGCAAATCCCTCAGGCCTTTCCCTG
CCTCTCTGGGTCCCTAGGGGGTTTTGATCTTTAGGTGAACACATTTCAAGTGGCTGGCCATGTA
AGAGGAGATCAGAGCTGCTCTTCACCACAGTTACTAACCAAATACCAGGACTAGATCCTGCTGT
CATTTTTGAAAGTGCCATATTCCTCTGAGTCTGGCTTCTTATGAGCAGATGTCTTGTTCTCACA
GACCCCAATGTCCTACCTACAGTCCCAGCACTCGCCCAGTCTCTGGGAAAACAAACCCTGCAAG
CTCCTGGTCTCAGCTCCCCTTCCTTCTCACCCTGCCTCCATTTGGTTTAATGTGTGTGTGATTG
TGATAGCCCTGAGATGGAAAGGATTAGCCTCTCACAATGCAAAAAAAAAAAAAATTCCCTCCTT
ACAGCACGAGCACTTCCTGCAATGCCGCGGTCTGTGTCCCCCACACCTGTTTACCACTGCCGGG
GCCTTCTTCGTCCTCGAGGGCTATTTTGTACTTCCGCAGCACTCAGCGCAGTAACAGTGACCAC
ACATTTCTCAGTCTCTCTGTGGTGGTGTAGGCACACATGTAGACACACAAGACAACTCCAGTCG
TATTTCATAGACCGTCTCGTTCAGAATCTATTCATTTACCAACGGCATAAATGACAACAACAAA
GAAAATTCTTGAATTTTTCCCCCATGGAAGCAAACCGTCGTCCTTCCTCTTAATCCACCTGCGG
CCGCAGAGGCTCGGGCCAGGCAGGTACTTTCTGTTGAGTGCTTCTGACTTTGCAGGCAACCAAG
ACAGTACATTGAGGGGGAGGTTTTTGGTTTTGCATGTTTCATTGTTAGAAAGATAGCCTTCCTC
AGAGACAAACTGTCCTTTATCTCTCAGTATCAAACGGAAAAAGCTGCAAGGGTGCACAGGGCCT
GTTTCCGGAAGACAAAACACAGGGAAACTGCATTTTTAAAAATCACGTGTAAAGCATAGACTTT
AAAACTCACTCAGAGACTCTGATTGACGGCACCTCCAAGGTGTGACAGCTCATCTTTCCTTCAC
CGCAGGGGTTCTAGGTCCTTGGCTTGTGCTACTCTGGAATCATTTACTGTTTCTGTTTTTATTA
TCTTAAGTGCTAATTAAAAAAAAAATAAAACTTAAAAAAATGTAGTTTCATTACCTTTTGAATA
ATGTCATACAAAAAACTGTATTTGTGTTTTTGTGCTGTGGGAATTGTTGTTTGTAGATTAATAA
TACCATTTTGTTTAGAACTACAAAATAGTTTTTAAATATTGTCTGAGAAAAGCCAAAGTTAATG
CAACCTAGTGGAAACTGTAAGACCATTTGAGTATTGTTTCTGTTGTATTGGTGCATTTGGATTT
TGTTGTTTGATGGAATTTGAGCCAAAAAACAAAAACGCAGGCTTTCCTATTTCTACAGCCGATT
GTCCTTATGCATTTTGTACCAGTGGGATTTTTTATACTGGAGATTAAAAAAAATGGAAATTTTT
GTGGCTTACTCTCGTGGGCCCCCTGACAATGACTGATTTCAAGTTTGATTTCTGGTTGATAGAA
AGAGAGTTGCTTTCCTTTTAAGAATTAAAAACTTTGGCTTGATTTCTTTTTTTCCCTTTGCTTA
TATCTAGCATTAGAATTTTGTCTTAAAATACAGCGGTAAGTTTCACTCTTTATTCTGTACTGTG
CAGTTACACAATAAGATAATTAGATTTAGAAGTACTCAGTCACTTTAAGTGGATAAATGTATTA
GTTAAACTTTAGGAGTTTGCTTTTTGCTGTTTAGATCGAAGTTTTTTCTGACCCTTCTGTCCTC
ATTGTGAACATAACCGTGTAGTTGAAACAGTCAGACTTATTTTTGTAATGTATGTTATTGTGTG
ATGCGGTTTTTTGCTTCTGTCTCCAATATTAAACCATTTTCCTAATA

hide sequence

RefSeq Acc Id:

XM_008771864 ⟹ XP_008770086

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,729,072 (+)	NCBI
Rnor_6.0	17	75,392,431 - 75,660,154 (+)	NCBI

Sequence:

show sequence

ACTTTTGGATCTTGTTTCTTCTCAACCACATTCTTTATTTGGATCGAATCACTATTTACCAAGT
AACGGCACAGCCAACAAGATGAACGGAGCTTTGGATCATTCCGACCAGCCAGACCCAGATGCCA
TTAAGATGTTTGTCGGACAGATCCCTAGGTCCTGGTCAGAAAAGGAGCTGAAAGAACTTTTTGA
GCCTTATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACCGGAGTCAGAACCCTCCCCAGAGC
AAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAAGCTGCACTTGAGGCCCAGAATGCACTGC
ACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGATGAAACCTGCAGATAGTGAAAA
GTCAAACGCTGTGGAAGACCGAAAATTGTTCATAGGAATGGTTTCCAAGAAGTGTAACGAGAAT
GACATCAGAGTGATGTTTTCTCCCTTCGGTCAGATAGAAGAATGCCGGATTCTCCGGGGACCTG
ACGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACCAGGGCAATGGCACAGAATGCAAT
CAAAGCCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTTCACCTATCGTGGTGAAGTTCGCT
GACACTCAGAAGGACAAGGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGATGCAACAGC
TCAACACTGCCACTTGGGGGAACCTGACAGGACTGGGTGGACTTACCCCACAGTACCTGGCGCT
TCTGCAGCAGGCCACCTCCTCCAGCAACCTGGGTGCATTCAGTGGCATTCAGCAAATGGCTGGC
ATGAATGCTTTACAGTTACAGAATCTGGCAACGCTGGCTGCAGCTGCAGCTGCCGCCCAAACCT
CAGCCACCAGCACCAATGCAAACCCTCTCTCCAGCACAAGCAGTGCCCTGGGGGCCCTCACAAG
TCCCGTGGCTGCTTCAACCCCCAATTCTACTGCTGGTGCAGCCATGAACTCCTTGACCTCTCTT
GGGACTCTGCAAGGATTGGCTGGAGCCACTGTCGGATTGAATAATATTAATGCACTAGCAGGTA
TGGCGGCTCTGAATGGAGGACTTGGCGCCACAGGCTTGACGAATGGTACGGCTGGCACCATGGA
CGCCCTCACGCAGGCCTACTCAGGAATTCAGCAGTACGCGGCAGCTGCACTGCCCACTTTGTAC
AGCCAGAGCCTGCTGCAGCAGCAGAGCGCTGCAGGCAGCCAGAAGGAAGGTCCAGAGGGGGCAA
ACCTCTTTATTTACCACCTTCCACAGGAGTTTGGAGACCAGGACATTCTGCAGATGTTCATGCC
CTTTGGAAATGTTATCTCTGCTAAAGTCTTCATTGACAAACAGACCAATCTGAGCAAGTGCTTT
GGTTTTGTTAGCTATGACAATCCAGTCTCTGCACAAGCTGCAATCCAGGCTATGAACGGCTTTC
AGATCGGCATGAAACGCTTGAAGGTGCAGCTGAAGCGCTCCAAAAACGACAGCAAACCTTACTG
ATCCTAACCCCAGAAGCTCCCTGCTCTTATTTTAGCTTTCTTAGGACATCTTCATGCCCGTTAG
TCATCGTTTGCCTAGCATGTCCCTGTGGCGTCTCAAAAACAGTTTCATCGTCCCGTCATTGTTT
CTGATGTCTTTCTGACCTCACGTCATATTTGGTTCTCTCCTACTGACCTTTGATCTAGTTTTGA
CCTTTGAAATTTGCATGTGACCTCATCTCGCTATGAATTCTGGGAAGTCAATGTGAAAAACATT
GCTGCATTCATGCAAGACTGAAATTATTAGACAAATTATAGAAAACAAAACCTGTGGCTAAAAT
GTTTCTTTCTTATTTTTTTTTTCTTTTCATAAAACAGACTTGAAAGTATTACACAGGGATTGGC
ATTCTGCCCGGTCACTGGTGACAATAGCAATATGTGTCCAGGGACACAGAATGTTGGTTTCTAA
CAGACTACTTCCAAAAACAGTTTGAGAAAAAAAAACTGTCTGATTTTAAGTCTCTAGAGGTCTG
TAATAGTTTTTACATTTTTCAGGCAGTGTAAAGTTTTTGATAAGGCCATTTTACGTGGCTCACT
TTCTCATTAAGATATATATAGAGAACCACTTTTTGTAGATTAGTATAAGAAAATATTTACCCTG
TTTTGGGGCAAATGCTACCTATTTGTGTCACCTTTTGCTGAACTGACTCACAGTTAGACAATCC
ATGGTTTAATGCACATGAAATTACCTATATTTTATACTGTTCCAATGTACAGGAGAAAGCTACT
GTAAACTGCGTCATGTCGGTGCTTCTGTGGATTAAGTTGTGGTCTCATCATGAGTCTTAAGGTC
TTAATGTTATTTGTTGATAAGACAAGCTTAGAATTGGTTTACTTATAACAAAAAGAATTTCAAA
AAAAAAAAAGTTGTTTGCTTAAAAAAAAAATTTAATGTGAGAAAAAAAAAAAAACAAACTATTC
CAGAATAAGTTTGTGTTGGCTTGAGAAAGCATTGATGTCACCTTTTTTATTGTGGACTATTAGA
TGTGTTTGTGTTCAGCAAAATGTGATCTGTTTTTGTTTTTTCTTTTAAAGAAAAAAAAGTGAAA
ACTATCTAGTGCCAAATTCCAAAGGTACTTCCTTCCTAGAGCTCCGCGTGTTTCCTGTGAGAAG
TAATTTGATAACATGGTATTTTATTATGTGTTTTGTATAAATCCCTAATATTTAAAACAAAAAA
AAAAAAAGGTTACAAAGTTTGTTAACTTGCTACTCCGTGGTCTTGTTGCCTGAAATTGTTATTG
TTCGTTATTTCTCTATGCTGTTTTGTAAGACATTGTATAAGTGCCCGTGTGTTACTTTTCTAAT
CACCCTCCACATCGATGCTATGACAGCAACCCTCACAATGTATTCTCTTCACAATGTCTGCAAA
CCTCCAAGGTGAGAAAGTCCTGAACTTTTAACCCTTTCTACCCAGAGCTATCTGGAATGTTGGT
AACTTTTTATACTGTCATCCTTGGGTTTCTTTTGGGGTGTTTAGATTTTTTTTCTCCATTTGTA
TCTTCTGAGTTTTTTGTTTTTTGAGACACCCACCCACCCAAAAACTCTTAAGTCTTTTTCCTAA
ACCATGTTTTATTTTTCTTTTTTATCCCCCCTCTTCCTTATTATTATCCTATGCTCCTTTAGTT
TAAATGTAAGAGATTGAGCAAATCCTATGAAGGTAAACGTAGGTAGATTTTTAGCCCCTACACA
AACCCTAAAGACAATGTCTGCTTTTCGAGATGGGGTTTCATGGTATGTCCTAGTGTACAATATT
TTTATACACCCTGGAGTTAATGGCTTTTTTTGGTGGTCTACTCTTTCAAGAAACGTTGCTTTTG
TTTCTTAAACACCCCTATGTAATGCTGAGTCAGTCATTCCGCCCGGGATTCTCAGACTCCTGTG
GACACCTGAATGAGAAAGGTGTCTTCACGCAAATCCCTCAGGCCTTTCCCTGCCTCTCTGGGTC
CCTAGGGGGTTTTGATCTTTAGGTGAACACATTTCAAGTGGCTGGCCATGTAAGAGGAGATCAG
AGCTGCTCTTCACCACAGTTACTAACCAAATACCAGGACTAGATCCTGCTGTCATTTTTGAAAG
TGCCATATTCCTCTGAGTCTGGCTTCTTATGAGCAGATGTCTTGTTCTCACAGACCCCAATGTC
CTACCTACAGTCCCAGCACTCGCCCAGTCTCTGGGAAAACAAACCCTGCAAGCTCCTGGTCTCA
GCTCCCCTTCCTTCTCACCCTGCCTCCATTTGGTTTAATGTGTGTGTGATTGTGATAGCCCTGA
GATGGAAAGGATTAGCCTCTCACAATGCAAAAAAAAAAAAAATTCCCTCCTTACAGCACGAGCA
CTTCCTGCAATGCCGCGGTCTGTGTCCCCCACACCTGTTTACCACTGCCGGGGCCTTCTTCGTC
CTCGAGGGCTATTTTGTACTTCCGCAGCACTCAGCGCAGTAACAGTGACCACACATTTCTCAGT
CTCTCTGTGGTGGTGTAGGCACACATGTAGACACACAAGACAACTCCAGTCGTATTTCATAGAC
CGTCTCGTTCAGAATCTATTCATTTACCAACGGCATAAATGACAACAACAAAGAAAATTCTTGA
ATTTTTCCCCCATGGAAGCAAACCGTCGTCCTTCCTCTTAATCCACCTGCGGCCGCAGAGGCTC
GGGCCAGGCAGGTACTTTCTGTTGAGTGCTTCTGACTTTGCAGGCAACCAAGACAGTACATTGA
GGGGGAGGTTTTTGGTTTTGCATGTTTCATTGTTAGAAAGATAGCCTTCCTCAGAGACAAACTG
TCCTTTATCTCTCAGTATCAAACGGAAAAAGCTGCAAGGGTGCACAGGGCCTGTTTCCGGAAGA
CAAAACACAGGGAAACTGCATTTTTAAAAATCACGTGTAAAGCATAGACTTTAAAACTCACTCA
GAGACTCTGATTGACGGCACCTCCAAGGTGTGACAGCTCATCTTTCCTTCACCGCAGGGGTTCT
AGGTCCTTGGCTTGTGCTACTCTGGAATCATTTACTGTTTCTGTTTTTATTATCTTAAGTGCTA
ATTAAAAAAAAAATAAAACTTAAAAAAATGTAGTTTCATTACCTTTTGAATAATGTCATACAAA
AAACTGTATTTGTGTTTTTGTGCTGTGGGAATTGTTGTTTGTAGATTAATAATACCATTTTGTT
TAGAACTACAAAATAGTTTTTAAATATTGTCTGAGAAAAGCCAAAGTTAATGCAACCTAGTGGA
AACTGTAAGACCATTTGAGTATTGTTTCTGTTGTATTGGTGCATTTGGATTTTGTTGTTTGATG
GAATTTGAGCCAAAAAACAAAAACGCAGGCTTTCCTATTTCTACAGCCGATTGTCCTTATGCAT
TTTGTACCAGTGGGATTTTTTATACTGGAGATTAAAAAAAATGGAAATTTTTGTGGCTTACTCT
CGTGGGCCCCCTGACAATGACTGATTTCAAGTTTGATTTCTGGTTGATAGAAAGAGAGTTGCTT
TCCTTTTAAGAATTAAAAACTTTGGCTTGATTTCTTTTTTTCCCTTTGCTTATATCTAGCATTA
GAATTTTGTCTTAAAATACAGCGGTAAGTTTCACTCTTTATTCTGTACTGTGCAGTTACACAAT
AAGATAATTAGATTTAGAAGTACTCAGTCACTTTAAGTGGATAAATGTATTAGTTAAACTTTAG
GAGTTTGCTTTTTGCTGTTTAGATCGAAGTTTTTTCTGACCCTTCTGTCCTCATTGTGAACATA
ACCGTGTAGTTGAAACAGTCAGACTTATTTTTGTAATGTATGTTATTGTGTGATGCGGTTTTTT
GCTTCTGTCTCCAATATTAAACCATTTTCCTAATA

hide sequence

RefSeq Acc Id:

XM_039095581 ⟹ XP_038951509

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,729,072 (+)	NCBI

RefSeq Acc Id:

XM_039095582 ⟹ XP_038951510

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095583 ⟹ XP_038951511

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095584 ⟹ XP_038951512

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095585 ⟹ XP_038951513

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	70,904,462 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095586 ⟹ XP_038951514

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,420,937 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095587 ⟹ XP_038951515

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095588 ⟹ XP_038951516

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,409,732 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095589 ⟹ XP_038951517

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095590 ⟹ XP_038951518

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,409,733 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095591 ⟹ XP_038951519

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,210,882 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095592 ⟹ XP_038951520

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,462,650 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095593 ⟹ XP_038951521

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,420,938 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095594 ⟹ XP_038951522

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,420,941 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095595 ⟹ XP_038951523

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,420,943 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095596 ⟹ XP_038951524

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,409,994 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095597 ⟹ XP_038951525

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,227,280 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095598 ⟹ XP_038951526

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,490,595 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095599 ⟹ XP_038951527

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,423,185 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095600 ⟹ XP_038951528

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,420,937 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095601 ⟹ XP_038951529

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,409,538 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095602 ⟹ XP_038951530

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,423,189 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095603 ⟹ XP_038951531

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,409,536 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095604 ⟹ XP_038951532

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,409,729 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095605 ⟹ XP_038951533

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,420,928 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095606 ⟹ XP_038951534

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,210,882 - 71,728,618 (+)	NCBI

RefSeq Acc Id:

XM_039095607 ⟹ XP_038951535

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	71,658,654 - 71,728,618 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001077055	(Get FASTA)	NCBI Sequence Viewer
	NP_058893	(Get FASTA)	NCBI Sequence Viewer
	XP_008770084	(Get FASTA)	NCBI Sequence Viewer
	XP_008770085	(Get FASTA)	NCBI Sequence Viewer
	XP_008770086	(Get FASTA)	NCBI Sequence Viewer
	XP_038951509	(Get FASTA)	NCBI Sequence Viewer
	XP_038951510	(Get FASTA)	NCBI Sequence Viewer
	XP_038951511	(Get FASTA)	NCBI Sequence Viewer
	XP_038951512	(Get FASTA)	NCBI Sequence Viewer
	XP_038951513	(Get FASTA)	NCBI Sequence Viewer
	XP_038951514	(Get FASTA)	NCBI Sequence Viewer
	XP_038951515	(Get FASTA)	NCBI Sequence Viewer
	XP_038951516	(Get FASTA)	NCBI Sequence Viewer
	XP_038951517	(Get FASTA)	NCBI Sequence Viewer
	XP_038951518	(Get FASTA)	NCBI Sequence Viewer
	XP_038951519	(Get FASTA)	NCBI Sequence Viewer
	XP_038951520	(Get FASTA)	NCBI Sequence Viewer
	XP_038951521	(Get FASTA)	NCBI Sequence Viewer
	XP_038951522	(Get FASTA)	NCBI Sequence Viewer
	XP_038951523	(Get FASTA)	NCBI Sequence Viewer
	XP_038951524	(Get FASTA)	NCBI Sequence Viewer
	XP_038951525	(Get FASTA)	NCBI Sequence Viewer
	XP_038951526	(Get FASTA)	NCBI Sequence Viewer
	XP_038951527	(Get FASTA)	NCBI Sequence Viewer
	XP_038951528	(Get FASTA)	NCBI Sequence Viewer
	XP_038951529	(Get FASTA)	NCBI Sequence Viewer
	XP_038951530	(Get FASTA)	NCBI Sequence Viewer
	XP_038951531	(Get FASTA)	NCBI Sequence Viewer
	XP_038951532	(Get FASTA)	NCBI Sequence Viewer
	XP_038951533	(Get FASTA)	NCBI Sequence Viewer
	XP_038951534	(Get FASTA)	NCBI Sequence Viewer
	XP_038951535	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD13762	(Get FASTA)	NCBI Sequence Viewer
	AAF89096	(Get FASTA)	NCBI Sequence Viewer
	AAI29097	(Get FASTA)	NCBI Sequence Viewer
	CAA09102	(Get FASTA)	NCBI Sequence Viewer
	CAA09103	(Get FASTA)	NCBI Sequence Viewer
	EDL78641	(Get FASTA)	NCBI Sequence Viewer
	EDL78642	(Get FASTA)	NCBI Sequence Viewer
	Q792H5	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_058893 ⟸ NM_017197
- Peptide Label:	isoform 1
- UniProtKB:	Q792H5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFERTSELAFVETISVESMRCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQ IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLP GMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWG NLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNA NPLSSTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGM AALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGAN LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQ IGMKRLKVQLKRSKNDSKPY hide sequence

RefSeq Acc Id:

NP_001077055 ⟸ NM_001083586

- Peptide Label:

isoform 2

- Sequence:

show sequence

MFERTSELAFVETISVESMRCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQ
IPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLP
GMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC
AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWG
NLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNA
NPLSSTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGG
LGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHL
PQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRL
KVQLKRSKNDSKPY

hide sequence

RefSeq Acc Id:	XP_008770084 ⟸ XM_008771862
- Peptide Label:	isoform X2
- UniProtKB:	Q792H5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMF SPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK EQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQL QNLATLAAAAAAAQTSATSTNANPLSSTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL AGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLY SQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCF GFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY hide sequence

RefSeq Acc Id:

XP_008770085 ⟸ XM_008771863

- Peptide Label:

isoform X3

- Sequence:

show sequence

MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV
TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMF
SPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK
EQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQL
QNLATLAAAAAAAQTSATSTNANPLSSTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL
AGATVGLNNINALAGTISSMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQ
SLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF
VSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY

hide sequence

RefSeq Acc Id:	XP_008770086 ⟸ XM_008771864
- Peptide Label:	isoform X4
- UniProtKB:	Q792H5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMF SPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK EQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQL QNLATLAAAAAAAQTSATSTNANPLSSTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL AGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQ QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYD NPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY hide sequence

RefSeq Acc Id:

ENSRNOP00000023436 ⟸ ENSRNOT00000023436

RefSeq Acc Id:	XP_038951513 ⟸ XM_039095585
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951519 ⟸ XM_039095591
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038951534 ⟸ XM_039095606
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038951525 ⟸ XM_039095597
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951531 ⟸ XM_039095603
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038951529 ⟸ XM_039095601
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951532 ⟸ XM_039095604
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038951516 ⟸ XM_039095588
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038951518 ⟸ XM_039095590
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038951524 ⟸ XM_039095596
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951533 ⟸ XM_039095605
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038951528 ⟸ XM_039095600
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951514 ⟸ XM_039095586
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038951521 ⟸ XM_039095593
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038951522 ⟸ XM_039095594
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038951523 ⟸ XM_039095595
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038951527 ⟸ XM_039095599
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951530 ⟸ XM_039095602
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038951509 ⟸ XM_039095581
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951515 ⟸ XM_039095587
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038951511 ⟸ XM_039095583
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038951517 ⟸ XM_039095589
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038951510 ⟸ XM_039095582
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038951512 ⟸ XM_039095584
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038951520 ⟸ XM_039095592
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038951526 ⟸ XM_039095598
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951535 ⟸ XM_039095607
- Peptide Label:	isoform X17

RefSeq Acc Id:

ENSRNOP00000093103 ⟸ ENSRNOT00000113911

RefSeq Acc Id:

ENSRNOP00000084295 ⟸ ENSRNOT00000095889

RefSeq Acc Id:

ENSRNOP00000095071 ⟸ ENSRNOT00000093949

RefSeq Acc Id:

ENSRNOP00000078975 ⟸ ENSRNOT00000113172

RefSeq Acc Id:

ENSRNOP00000084524 ⟸ ENSRNOT00000101298

RefSeq Acc Id:

ENSRNOP00000083368 ⟸ ENSRNOT00000097332

RefSeq Acc Id:

ENSRNOP00000077512 ⟸ ENSRNOT00000106925

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q792H5-F1-model_v2	AlphaFold	Q792H5	1-508	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (mRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
17	75640966	75640967	C	G	snv	WKY/NCrl (RGD)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68347	AgrOrtholog
BioCyc Gene	G2FUF-8725	BioCyc
Ensembl Genes	ENSRNOG00000023661	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000023436	ENTREZGENE
	ENSRNOP00000023436.5	UniProtKB/TrEMBL
	ENSRNOP00000077512	ENTREZGENE
	ENSRNOP00000077512.1	UniProtKB/TrEMBL
	ENSRNOP00000078975	ENTREZGENE
	ENSRNOP00000078975.1	UniProtKB/TrEMBL
	ENSRNOP00000083368.1	UniProtKB/TrEMBL
	ENSRNOP00000084295	ENTREZGENE
	ENSRNOP00000084295.1	UniProtKB/TrEMBL
	ENSRNOP00000084524.1	UniProtKB/TrEMBL
	ENSRNOP00000093103	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000095071.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023436	ENTREZGENE
	ENSRNOT00000023436.5	UniProtKB/TrEMBL
	ENSRNOT00000093949.1	UniProtKB/TrEMBL
	ENSRNOT00000095889	ENTREZGENE
	ENSRNOT00000095889.1	UniProtKB/TrEMBL
	ENSRNOT00000097332.1	UniProtKB/TrEMBL
	ENSRNOT00000101298.1	UniProtKB/TrEMBL
	ENSRNOT00000106925	ENTREZGENE
	ENSRNOT00000106925.1	UniProtKB/TrEMBL
	ENSRNOT00000113172	ENTREZGENE
	ENSRNOT00000113172.1	UniProtKB/TrEMBL
	ENSRNOT00000113911	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8362847	IMAGE-MGC_LOAD
InterPro	CELF1/2_RRM1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CELF1/2_RRM2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CELF1/2_RRM3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Hud_Sxl_RNA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29428	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156660	IMAGE-MGC_LOAD
NCBI Gene	29428	ENTREZGENE
Pfam	RRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Celf2	PhenoGen
PRINTS	HUDSXLRNA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZJI1_RAT	UniProtKB/TrEMBL
	A0A8I5ZWV8_RAT	UniProtKB/TrEMBL
	A0A8I5ZWW9_RAT	UniProtKB/TrEMBL
	A0A8I5ZYB3_RAT	UniProtKB/TrEMBL
	A0A8I6G2N0_RAT	UniProtKB/TrEMBL
	A0A8I6GLG1_RAT	UniProtKB/TrEMBL
	CELF2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Z4YNP1_RAT	UniProtKB/TrEMBL
UniProt Secondary	A1L1J5	UniProtKB/Swiss-Prot
	O88756	UniProtKB/Swiss-Prot
	Q78ZF0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Celf2	CUGBP, Elav-like family member 2	Cugbp2	CUG triplet repeat, RNA binding protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Cugbp2	CUG triplet repeat,RNA-binding protein 2			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the nucleus	632538

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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