Gluco40 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Gluco40 (Glucose level QTL 40) Rattus norvegicus

Symbol: Gluco40
Name: Glucose level QTL 40
RGD ID: 2302365
Trait: blood glucose amount   (VT:0000188)    
Measurement Type: blood glucose level area under curve (AUC)   (CMO:0000350)    
LOD Score: 4.79
P Value: Not Available
Variance: 16.7
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81764,569,820 - 86,954,580RGD_MAPPER_PIPELINE
mRatBN7.21757,246,843 - 82,046,127RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01762,195,822 - 86,194,199RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01763,969,577 - 87,905,751RGDRnor5.0
RGSC_v3.41765,900,518 - 93,489,534RGDRGSC3.4
Cross Type: intercross
Strains Crossed: WOKW/K DA/K 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gluco40RatMetabolic Syndrome  TAS 619689 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gluco40Ratincreased circulating glucose level  IDA 619689 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gluco40Ratblood glucose level area under curve (AUC)  IDA 619689 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gluco40Ratglucose solution  IDA 619689 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gluco40Ratintraperitoneal glucose tolerance test  IDA 619689 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gluco40RatDA/K  IEA 619689 RGD 
Gluco40RatWOKW/K  IEA 619689 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gluco40Ratblood glucose amount  IDA 619689 RGD 


#
Reference Title
Reference Citation
1. Genetic dissection of the syndrome X in the rat. Kovacs P, etal., Biochem Biophys Res Commun 2000 Mar 24;269(3):660-5.


1 to 20 of 256 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1560525Fzd8frizzled class receptor 8175731292457320551Rat
628621Gjd4gap junction protein, delta 4175734884457352601Rat
1565969Ccnycyclin Y175738500257512860Rat
6501948LOC100909729uncharacterized LOC100909729175751315957514759Rat
9152346LOC103690071interaptin-like175762154257900975Rat
9472036PotedPOTE ankyrin domain family member D175794212457975149Rat
1566097Anlnl1anillin, actin binding protein-like 1175798534057995824Rat
621272Lgals8galectin 8175802465258052764Rat
1564769Heatr1HEAT repeat containing 1175805328858093895Rat
1308097Actn2actinin alpha 2175814333458210622Rat
41054517Trnas-aga47transfer RNA serine (anticodon AGA) 47175819156958191644Rat
621283Mtr5-methyltetrahydrofolate-homocysteine methyltransferase175821999858308560Rat
41377181LOC120097915uncharacterized LOC120097915175824370458247835Rat
41125104LOC120097928SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like175827429558278695Rat
41267736Rps7-ps15ribosomal protein S7, pseudogene 15175832060758324029Rat
620314Ryr2ryanodine receptor 2175838992558975641Rat
41332867LOC120098026small nucleolar RNA U3175842230958422433Rat
628708Zp4zona pellucida glycoprotein 4175900564959012202Rat
41156892LOC120097906uncharacterized LOC120097906175913071959138035Rat
41243501LOC120097813uncharacterized LOC120097813175933758259355633Rat

1 to 20 of 256 rows
1 to 20 of 408 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10348D17Mit4231176046341260463643Ratregion
10349D17Arb7237176046340560463642Ratregion
10350D17Wox12137176046350060463637Ratregion
10351D17Wox13150176046348360463633Ratregion
10490D5Uwm5171177589418175894750Ratregion
33939D17Mit11146177806876478068910Ratregion
34391D17Mgh9148176811706768117215Ratregion
33707D17Mit5281177085256570852846Ratregion
36211D17Rat34159176227078862270949Ratregion
36315D17Rat41175176883571268835887Ratregion
37234D17Rat97239176210933362109574Ratregion
37352D17Rat85201178107631681076517Ratregion
37404D17Rat82197176877890768779104Ratregion
35258D17Rat36173176364000963640182Ratregion
35274D17Rat45126177100332571003451Ratregion
35473D17Rat58143176959919769599340Ratregion
36844D17Rat48163177750219477502357Ratregion
37068D17Rat42141177121497771215120Ratregion
37762D17Rat170176175949767959497857Ratregion
37926D17Rat62121177242009472420215Ratregion
1 to 20 of 408 rows

Flank 1: (D17Wox8)
Rat AssemblyChrPosition (strand)Source
GRCr81786,954,467 - 86,954,580 (+)Marker Load Pipeline
mRatBN7.21782,046,127 - 82,046,240 (+)MAPPER
Rnor_6.01786,194,199 - 86,194,311NCBI
Rnor_5.01787,905,751 - 87,905,863UniSTS
RGSC_v3.41793,489,534 - 93,489,647RGD
RGSC_v3.41793,489,535 - 93,489,647UniSTS
RGSC_v3.11793,500,367 - 93,500,480RGD
Celera1781,315,961 - 81,316,067UniSTS
Celera1781,318,723 - 81,318,835UniSTS
RH 3.4 Map17833.3RGD
RH 3.4 Map17833.3UniSTS
RH 2.0 Map17715.4RGD
Cytogenetic Map17 RGD
Peak: (D17Mit5)
Rat AssemblyChrPosition (strand)Source
GRCr81775,762,060 - 75,762,341 (+)Marker Load Pipeline
mRatBN7.21770,852,565 - 70,852,846 (+)MAPPER
Rnor_6.01774,701,926 - 74,702,206NCBI
Rnor_5.01776,361,596 - 76,361,876UniSTS
RGSC_v3.41782,125,182 - 82,125,463RGD
RGSC_v3.41782,125,183 - 82,125,463UniSTS
RGSC_v3.11782,136,016 - 82,136,296RGD
Celera1770,314,995 - 70,315,274UniSTS
RH 3.4 Map17690.7UniSTS
RH 3.4 Map17690.7RGD
RH 2.0 Map17598.7RGD
Cytogenetic Map17 RGD
Flank 2: (D17Wox9)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21757,246,723 - 57,246,843 (+)MAPPER
Rnor_6.01762,195,703 - 62,195,822NCBI
Rnor_5.01763,969,458 - 63,969,577UniSTS
RGSC_v3.41765,900,398 - 65,900,518RGD
RGSC_v3.41765,900,399 - 65,900,518UniSTS
RGSC_v3.11765,911,232 - 65,911,351RGD
Celera1758,532,268 - 58,532,375UniSTS
RH 3.4 Map17588.6UniSTS
RH 3.4 Map17588.6RGD
RH 2.0 Map17510.6RGD
Cytogenetic Map17 RGD


1 to 10 of 63 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
11528636Bss120Bone structure and strength QTL 1208.553e-09femur morphology trait (VT:0000559)femoral neck width (CMO:0001695)177783006478603788Rat

1 to 10 of 63 rows


Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: rats were injected with (2g/kg body wt) 20% glucose at 28, 30 and 32 wks of age and intraperitoneal glucose tolerance test (IPGTT) performed; blood glucose level measured after tail vein incision at 0, 10, 30, and 60 min after injection using glucose analyser 619689
qtl_general software used: MAPMAKER (EXP3.0b and QTL1.1b) 619689
qtl_general number of animals used: 76(WOKW X DA)F2 and 74(DA X WOKW)F2 males 619689