Pimregl1 (PICALM interacting mitotic regulator like 1) - Rat Genome Database

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Gene: Pimregl1 (PICALM interacting mitotic regulator like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Pimregl1 (Ensembl: LOC100912261)
Name: PICALM interacting mitotic regulator like 1 (Ensembl:protein FAM64A-like)
RGD ID: 6488061
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100912261; protein FAM64A-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81786,774,095 - 86,775,093 (-)NCBIGRCr8
mRatBN7.21781,864,207 - 81,868,932 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1781,865,770 - 81,866,459 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0912,001,330 - 12,002,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl912,001,377 - 12,002,067 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0910,969,308 - 10,970,046 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Pimregl1
30 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000072423
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)177177462182479847Rat

Markers in Region
AI115087  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0912,000,977 - 12,001,083NCBIRnor6.0
Rnor_5.0910,968,944 - 10,969,050UniSTSRnor5.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063276966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000022385   ⟹   ENSRNOP00000092866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1781,865,770 - 81,866,459 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000072423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl912,001,377 - 12,002,067 (-)Ensembl
RefSeq Acc Id: XM_063276966   ⟹   XP_063133036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81786,774,095 - 86,775,093 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063133036 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092866.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000092866   ⟸   ENSRNOT00000022385
RefSeq Acc Id: XP_063133036   ⟸   XM_063276966
- UniProtKB: A0A8I6AIJ1 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-8535 BioCyc
Ensembl Genes ENSRNOG00000016710 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000045990 Ensembl
Ensembl Transcript ENSRNOT00000022385.3 UniProtKB/TrEMBL
InterPro RCS1 UniProtKB/TrEMBL
NCBI Gene LOC100912261 ENTREZGENE
PANTHER PROTEIN PIMREG UniProtKB/TrEMBL
  PTHR35819 UniProtKB/TrEMBL
Pfam RCS1 UniProtKB/TrEMBL
PhenoGen Pimregl1 PhenoGen
RatGTEx ENSRNOG00000016710 RatGTEx
  ENSRNOG00000045990 RatGTEx
UniProt A0A8I6AIJ1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Pimregl1  PICALM interacting mitotic regulator like 1  LOC100912261  protein FAM64A-like  Symbol and Name Changed 1299863 APPROVED
2012-07-05 LOC100912261  protein FAM64A-like      Symbol and Name status set to provisional 70820 PROVISIONAL