Dip2c (disco-interacting protein 2 homolog C) - Rat Genome Database

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Gene: Dip2c (disco-interacting protein 2 homolog C) Rattus norvegicus
Analyze
Symbol: Dip2c
Name: disco-interacting protein 2 homolog C
RGD ID: 1560155
Description: Orthologous to human DIP2C (disco interacting protein 2 homolog C); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DIP2 disco-interacting protein 2 homolog C; DIP2 disco-interacting protein 2 homolog C (Drosophila); hypothetical protein LOC307067; LOC307067; RGD1560155; similar to mKIAA0934 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21760,647,346 - 61,032,467 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1760,649,065 - 61,032,305 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1763,853,063 - 64,235,761 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01767,856,142 - 68,238,849 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01762,016,427 - 62,399,132 (-)NCBIRnor_WKY
Rnor_6.01763,426,688 - 63,810,183 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1763,635,086 - 63,808,464 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01765,192,657 - 65,574,790 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41771,435,930 - 71,824,903 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1759,546,181 - 59,928,285 (+)NCBICelera
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:31505169  


Genomics

Comparative Map Data
Dip2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21760,647,346 - 61,032,467 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1760,649,065 - 61,032,305 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1763,853,063 - 64,235,761 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01767,856,142 - 68,238,849 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01762,016,427 - 62,399,132 (-)NCBIRnor_WKY
Rnor_6.01763,426,688 - 63,810,183 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1763,635,086 - 63,808,464 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01765,192,657 - 65,574,790 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41771,435,930 - 71,824,903 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1759,546,181 - 59,928,285 (+)NCBICelera
Cytogenetic Map17q12.1NCBI
DIP2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810274,201 - 689,668 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl10274,190 - 689,668 (-)EnsemblGRCh38hg38GRCh38
GRCh3710320,141 - 735,608 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610311,432 - 725,606 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410311,431 - 725,606NCBI
Celera10274,747 - 488,085 (-)NCBICelera
Cytogenetic Map10p15.3NCBI
HuRef10264,622 - 476,755 (-)NCBIHuRef
CHM1_110320,044 - 735,574 (-)NCBICHM1_1
T2T-CHM13v2.010267,399 - 686,466 (-)NCBIT2T-CHM13v2.0
Dip2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,326,530 - 9,718,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl139,326,564 - 9,718,964 (+)EnsemblGRCm39 Ensembl
GRCm38139,276,507 - 9,668,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,276,528 - 9,668,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv37139,275,772 - 9,668,171 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36139,275,772 - 9,668,171 (+)NCBIMGSCv36mm8
Celera139,218,693 - 9,611,044 (+)NCBICelera
Cytogenetic Map13A1NCBI
Dip2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955492542,666 - 764,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955492543,026 - 764,697 (+)NCBIChiLan1.0ChiLan1.0
DIP2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110365,530 - 568,979 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10368,633 - 572,975 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010285,994 - 717,481 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
DIP2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1234,307,429 - 34,470,137 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl234,308,875 - 34,469,706 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha231,251,031 - 31,502,986 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0234,601,101 - 34,853,392 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl234,691,854 - 34,853,382 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1231,684,189 - 31,936,279 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0232,523,933 - 32,775,107 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,271,034 - 33,522,681 (+)NCBIUU_Cfam_GSD_1.0
Dip2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934437,422,311 - 37,589,869 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648413,587,541 - 13,752,361 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DIP2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1068,770,164 - 69,141,871 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11068,770,149 - 69,141,876 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21076,166,342 - 76,213,030 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DIP2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19293,786 - 668,102 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9293,705 - 455,882 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660515,323,997 - 5,701,260 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dip2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477510,276,101 - 10,710,380 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477510,275,975 - 10,713,227 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D17Rat151  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,781,426 - 60,781,592 (-)MAPPERmRatBN7.2
Rnor_6.01763,675,975 - 63,676,140NCBIRnor6.0
Rnor_5.01765,440,692 - 65,440,857UniSTSRnor5.0
RGSC_v3.41771,569,891 - 71,570,057RGDRGSC3.4
RGSC_v3.41771,569,892 - 71,570,057UniSTSRGSC3.4
RGSC_v3.11771,580,725 - 71,580,890RGD
RH 3.4 Map17587.2RGD
RH 3.4 Map17587.2UniSTS
RH 2.0 Map17499.9RGD
SHRSP x BN Map1732.6599RGD
Cytogenetic Map17q12.1UniSTS
D17Rat35  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01763,628,705 - 63,628,845NCBIRnor6.0
Rnor_5.01765,393,289 - 65,393,429UniSTSRnor5.0
RGSC_v3.41771,617,873 - 71,618,010UniSTSRGSC3.4
RGSC_v3.41771,617,799 - 71,618,038RGDRGSC3.4
RGSC_v3.11771,628,706 - 71,628,843RGD
Celera1759,748,335 - 59,748,472UniSTS
RH 3.4 Map17586.7RGD
RH 3.4 Map17586.7UniSTS
RH 2.0 Map17533.9RGD
SHRSP x BN Map1732.6199RGD
Cytogenetic Map17q12.1UniSTS
RH142783  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,648,699 - 60,648,807 (-)MAPPERmRatBN7.2
Rnor_6.01763,808,722 - 63,808,829NCBIRnor6.0
Rnor_5.01765,573,329 - 65,573,436UniSTSRnor5.0
RGSC_v3.41771,435,565 - 71,435,672UniSTSRGSC3.4
Celera1759,928,543 - 59,928,650UniSTS
RH 3.4 Map17587.1UniSTS
Cytogenetic Map17q12.1UniSTS
RH138967  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,648,648 - 60,648,800 (-)MAPPERmRatBN7.2
Rnor_6.01763,808,729 - 63,808,880NCBIRnor6.0
Rnor_5.01765,573,336 - 65,573,487UniSTSRnor5.0
RGSC_v3.41771,435,514 - 71,435,665UniSTSRGSC3.4
Celera1759,928,550 - 59,928,701UniSTS
Cytogenetic Map17q12.1UniSTS
RH140056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21761,030,234 - 61,030,426 (-)MAPPERmRatBN7.2
Rnor_6.01763,428,449 - 63,428,640NCBIRnor6.0
Rnor_5.01765,194,106 - 65,194,297UniSTSRnor5.0
RGSC_v3.41771,823,279 - 71,823,470UniSTSRGSC3.4
Celera1759,547,334 - 59,547,525UniSTS
RH 3.4 Map17610.9UniSTS
Cytogenetic Map17q12.1UniSTS
AU049454  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,996,155 - 60,996,421 (-)MAPPERmRatBN7.2
Rnor_6.01763,462,441 - 63,462,708NCBIRnor6.0
Rnor_5.01765,227,952 - 65,228,219UniSTSRnor5.0
RGSC_v3.41771,788,576 - 71,788,843UniSTSRGSC3.4
Celera1759,581,320 - 59,581,587UniSTS
Cytogenetic Map17q12.1UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174207316069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)175724672370852846Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)175900564977910000Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000020634
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 42 8 8 8 74 28 37 11 8
Low 3 1 49 41 19 41 3 7 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000020634   ⟹   ENSRNOP00000020634
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1760,649,065 - 61,032,305 (-)Ensembl
Rnor_6.0 Ensembl1763,635,086 - 63,808,464 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103716   ⟹   ENSRNOP00000078375
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1760,649,065 - 61,032,305 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111869   ⟹   ENSRNOP00000097731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1760,649,065 - 61,032,305 (-)Ensembl
RefSeq Acc Id: NM_001107360   ⟹   NP_001100830
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,649,065 - 61,031,841 (-)NCBI
Rnor_6.01763,427,016 - 63,808,464 (+)NCBI
Rnor_5.01765,192,657 - 65,574,790 (+)NCBI
RGSC_v3.41771,435,930 - 71,824,903 (-)RGD
Celera1759,546,181 - 59,928,285 (+)RGD
Sequence:
RefSeq Acc Id: XM_017600565   ⟹   XP_017456054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 61,032,467 (-)NCBI
Rnor_6.01763,427,000 - 63,810,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600566   ⟹   XP_017456055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 61,032,467 (-)NCBI
Rnor_6.01763,427,000 - 63,810,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600567   ⟹   XP_017456056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 61,032,467 (-)NCBI
Rnor_6.01763,427,000 - 63,810,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600568   ⟹   XP_017456057
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 61,032,467 (-)NCBI
Rnor_6.01763,427,000 - 63,810,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095749   ⟹   XP_038951677
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 61,032,467 (-)NCBI
RefSeq Acc Id: XM_039095750   ⟹   XP_038951678
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 60,847,365 (-)NCBI
RefSeq Acc Id: XM_039095751   ⟹   XP_038951679
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 60,847,363 (-)NCBI
RefSeq Acc Id: XM_039095752   ⟹   XP_038951680
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 60,858,848 (-)NCBI
RefSeq Acc Id: XM_039095753   ⟹   XP_038951681
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 60,860,841 (-)NCBI
RefSeq Acc Id: XM_039095754   ⟹   XP_038951682
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21760,647,346 - 60,762,423 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100830   ⟸   NM_001107360
- Sequence:
RefSeq Acc Id: XP_017456055   ⟸   XM_017600566
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017456054   ⟸   XM_017600565
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456056   ⟸   XM_017600567
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456057   ⟸   XM_017600568
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000020634   ⟸   ENSRNOT00000020634
RefSeq Acc Id: XP_038951677   ⟸   XM_039095749
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038951681   ⟸   XM_039095753
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038951680   ⟸   XM_039095752
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038951678   ⟸   XM_039095750
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038951679   ⟸   XM_039095751
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038951682   ⟸   XM_039095754
- Peptide Label: isoform X9
RefSeq Acc Id: ENSRNOP00000078375   ⟸   ENSRNOT00000103716
RefSeq Acc Id: ENSRNOP00000097731   ⟸   ENSRNOT00000111869
Protein Domains
DMAP1-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZB0-F1-model_v2 AlphaFold D3ZZB0 1-1586 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 65480058 65480059 G T snv SR/JrHsd (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 71498042 71498043 C A snv HCR/2Mco (UMich)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560155 AgrOrtholog
BioCyc Gene G2FUF-8912 BioCyc
Ensembl Genes ENSRNOG00000015288 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000020634 ENTREZGENE
  ENSRNOP00000020634.6 UniProtKB/TrEMBL
  ENSRNOP00000078375.1 UniProtKB/TrEMBL
  ENSRNOP00000097731.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020634 ENTREZGENE
  ENSRNOT00000020634.7 UniProtKB/TrEMBL
  ENSRNOT00000103716.1 UniProtKB/TrEMBL
  ENSRNOT00000111869.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  AMP-dep_Synthh-like_sf UniProtKB/TrEMBL
  Dip2_like_dom UniProtKB/TrEMBL
  DMAP1-bd UniProtKB/TrEMBL
NCBI Gene 307067 ENTREZGENE
Pfam AMP-binding UniProtKB/TrEMBL
  DMAP_binding UniProtKB/TrEMBL
PhenoGen Dip2c PhenoGen
PROSITE DMAP1_BIND UniProtKB/TrEMBL
SMART DMAP_binding UniProtKB/TrEMBL
UniProt A0A8I6ASD3_RAT UniProtKB/TrEMBL
  A0A8I6G2N3_RAT UniProtKB/TrEMBL
  D3ZZB0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-15 Dip2c  disco-interacting protein 2 homolog C  Dip2c  DIP2 disco-interacting protein 2 homolog C (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Dip2c  DIP2 disco-interacting protein 2 homolog C (Drosophila)  RGD1560155  similar to mKIAA0934 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560155  similar to mKIAA0934 protein   RGD1560155_predicted  similar to mKIAA0934 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560155_predicted  similar to mKIAA0934 protein (predicted)  LOC307067  similar to mKIAA0934 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307067  similar to mKIAA0934 protein      Symbol and Name status set to provisional 70820 PROVISIONAL