Atp5f1c (ATP synthase F1 subunit gamma)

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Gene: Atp5f1c (ATP synthase F1 subunit gamma) Rattus norvegicus

Analyze

Symbol:

Atp5f1c

Name:

ATP synthase F1 subunit gamma

RGD ID:

620011

Description:

Contributes to ATP hydrolysis activity. Involved in ATP metabolic process and cellular response to nitric oxide. Located in mitochondrial inner membrane. Part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Biomarker of schizophrenia. Orthologous to human ATP5F1C (ATP synthase F1 subunit gamma); PARTICIPATES IN electron transport chain pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ATP synthase subunit gamma, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1; Atp5c1; F-ATPase gamma subunit

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	68,423,927 - 68,446,169 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	17	68,423,909 - 68,608,367 (+)	Ensembl
Rnor_6.0	17	72,209,321 - 72,231,562 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	72,209,373 - 72,394,271 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	73,895,019 - 73,917,300 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	79,738,999 - 79,761,176 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	17	79,749,831 - 79,772,008 (+)	NCBI
Celera	17	67,910,474 - 67,932,651 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

hypoparathyroidism-deafness-renal disease syndrome (ISO)

obesity (ISO)

schizophrenia (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

5-methyl-4-oxido-2-pyrazin-4-iumcarboxylic acid (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

antimycin A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

azoxystrobin (ISO)

benzatropine (ISO)

bisphenol A (EXP,ISO)

chloropicrin (ISO)

clofibrate (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

doxorubicin (ISO)

fenpyroximate (ISO)

flutamide (EXP,ISO)

gentamycin (EXP)

isotretinoin (ISO)

ivermectin (ISO)

lamivudine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methyl methanesulfonate (ISO)

mitoxantrone (ISO)

oxybenzone (EXP)

p-toluidine (EXP)

paracetamol (EXP,ISO)

perfluorooctanoic acid (ISO)

phenylpropanolamine (ISO)

phlorizin (ISO)

picoxystrobin (ISO)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

tolcapone (EXP)

toluene (EXP)

Tributyltin oxide (EXP)

triptonide (ISO)

tungsten (ISO)

valproic acid (EXP,ISO)

vincristine (ISO)

vitamin E (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ATP metabolic process (IDA)

cellular response to nitric oxide (IEP)

ion transport (IEA)

proton motive force-driven ATP synthesis (IBA,IEA)

proton motive force-driven mitochondrial ATP synthesis (ISO)

Cellular Component

mitochondrial inner membrane (IDA)

mitochondrial proton-transporting ATP synthase complex (IDA,ISO)

mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) (IBA,IDA)

proton-transporting ATP synthase complex, catalytic core F(1) (IDA,IEA)

Molecular Function

ATP hydrolysis activity (IDA)

protein binding (ISO)

protein heterodimerization activity (IEA)

proton-transporting ATP synthase activity, rotational mechanism (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Alzheimer's disease pathway (IEA)

electron transport chain pathway (ISO)

Huntington's disease pathway (IEA)

oxidative phosphorylation pathway (IEA)

Parkinson's disease pathway (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Jabs EW, etal., Hum Genet 1994 May;93(5):600-2.
4.	KEGG
5.	Ko YH, etal., J Biol Chem. 2000 Oct 20;275(42):32931-9.
6.	Meyer B, etal., Mol Cell Proteomics. 2007 Oct;6(10):1690-9. Epub 2007 Jun 17.
7.	MGD data from the GO Consortium
8.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	Pedersen PL, etal., Biochemistry. 1987 Dec 29;26(26):8631-7.
10.	Pihlajamäki J, etal., J Clin Endocrinol Metab. 2009 Sep;94(9):3521-9. doi: 10.1210/jc.2009-0212. Epub 2009 Jun 23.
11.	Pipeline to import KEGG annotations from KEGG into RGD
12.	Pipeline to import SMPDB annotations from SMPDB into RGD
13.	RGD automated data pipeline
14.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15.	RGD automated import pipeline for gene-chemical interactions
16.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
17.	Sun L, etal., Brain Res Bull. 2018 Aug 22;142:304-312. doi: 10.1016/j.brainresbull.2018.08.013.
18.	Tapia-Limonchi R, etal., Islets. 2014;6(5-6):e995997. doi: 10.1080/19382014.2014.995997.

Additional References at PubMed

PMID:9736690	PMID:12110673	PMID:12865426	PMID:14651853	PMID:17634366	PMID:18614015	PMID:19946888	PMID:22658674	PMID:23376485	PMID:24625528	PMID:25931508	PMID:29476059
PMID:31904090	PMID:32357304

Genomics

Comparative Map Data

Atp5f1c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	68,423,927 - 68,446,169 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	17	68,423,909 - 68,608,367 (+)	Ensembl
Rnor_6.0	17	72,209,321 - 72,231,562 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	72,209,373 - 72,394,271 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	73,895,019 - 73,917,300 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	79,738,999 - 79,761,176 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	17	79,749,831 - 79,772,008 (+)	NCBI
Celera	17	67,910,474 - 67,932,651 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

ATP5F1C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	7,788,177 - 7,807,801 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	10	7,788,147 - 7,807,815 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	7,830,140 - 7,849,764 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	7,870,099 - 7,889,770 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	10	7,870,098 - 7,889,766	NCBI
Celera	10	7,755,913 - 7,775,585 (+)	NCBI
Cytogenetic Map	10	p14	NCBI
HuRef	10	7,748,461 - 7,768,132 (+)	NCBI		HuRef
CHM1_1	10	7,829,833 - 7,849,495 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	7,788,947 - 7,808,583 (+)	NCBI

Atp5c1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	10,060,841 - 10,085,321 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	10,060,827 - 10,085,321 (-)	Ensembl
GRCm38	2	10,056,030 - 10,080,510 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	10,056,016 - 10,080,510 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	9,977,657 - 10,002,137 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	9,973,887 - 9,998,282 (-)	NCBI			mm8
Celera	2	9,998,573 - 10,019,583 (-)	NCBI		Celera
Celera	X	56,411,914 - 56,412,248 (+)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI

Atp5f1c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	24,234,413 - 24,253,640 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	24,234,473 - 24,253,640 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATP5F1C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	10	7,801,433 - 7,821,097 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	7,801,438 - 7,821,088 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	10	7,820,874 - 7,840,581 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

ATP5F1C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	28,306,857 - 28,325,149 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	28,306,857 - 28,325,116 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	25,347,713 - 25,366,002 (-)	NCBI
ROS_Cfam_1.0	2	28,688,476 - 28,706,739 (-)	NCBI
ROS_Cfam_1.0 Ensembl	2	28,688,483 - 28,706,764 (-)	Ensembl
UMICH_Zoey_3.1	2	25,794,880 - 25,813,165 (-)	NCBI
UNSW_CanFamBas_1.0	2	26,636,833 - 26,655,096 (-)	NCBI
UU_Cfam_GSD_1.0	2	27,354,962 - 27,373,216 (-)	NCBI

Atp5f1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	30,850,402 - 30,865,882 (-)	NCBI
SpeTri2.0	NW_004936484	7,016,049 - 7,031,060 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP5F1C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	63,583,693 - 63,599,453 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	63,584,288 - 63,599,537 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ATP5F1C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	7,836,863 - 7,853,645 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	9	7,836,845 - 7,854,078 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666051	13,232,697 - 13,249,468 (+)	NCBI	Vero_WHO_p1.0

Atp5f1c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	2,744,731 - 2,768,373 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624775	2,745,556 - 2,765,269 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

MARC_5003-5004:996690032:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	68,441,339 - 68,442,557 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	72,226,733 - 72,227,950	NCBI	Rnor6.0
Rnor_5.0	17	73,912,437 - 73,913,654	UniSTS	Rnor5.0
RGSC_v3.4	17	79,756,357 - 79,757,574	UniSTS	RGSC3.4
Celera	17	67,927,832 - 67,929,049	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	17	42073160	69599340	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	42073160	69599340	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	53498828	82479847	Rat
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	57246723	70156904	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	57246723	70852846	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	57246843	82046127	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	59005649	77910000	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63640009	73951021	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	65703580	81153923	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC059158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L19927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000025993 ⟹ ENSRNOP00000025993

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	17	72,240,802 - 72,394,271 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000041346 ⟹ ENSRNOP00000049879

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	68,423,909 - 68,473,374 (+)	Ensembl
Rnor_6.0 Ensembl	17	72,218,769 - 72,258,890 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000064802 ⟹ ENSRNOP00000061946

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	68,423,935 - 68,446,163 (+)	Ensembl
Rnor_6.0 Ensembl	17	72,209,373 - 72,231,551 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090453 ⟹ ENSRNOP00000068697

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	68,455,461 - 68,608,367 (+)	Ensembl
Rnor_6.0 Ensembl	17	72,240,852 - 72,393,448 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098367 ⟹ ENSRNOP00000076528

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	68,431,430 - 68,446,169 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104116 ⟹ ENSRNOP00000090262

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	68,423,917 - 68,446,202 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000116066 ⟹ ENSRNOP00000097532

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	68,423,909 - 68,443,995 (+)	Ensembl

RefSeq Acc Id:

NM_053825 ⟹ NP_446277

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	68,423,981 - 68,446,159 (+)	NCBI
Rnor_6.0	17	72,209,375 - 72,231,552 (+)	NCBI
Rnor_5.0	17	73,895,019 - 73,917,300 (+)	NCBI
RGSC_v3.4	17	79,738,999 - 79,761,176 (+)	RGD
Celera	17	67,910,474 - 67,932,651 (+)	RGD

Sequence:

show sequence

GCAGTGAGCCTCGTCTGCCCGACCTTCAAGGTTCTACCATGTTCTCGCGGGCGAGTATTGTCGG
GCTGTCGGCCTGCTCCTTGCAGCCGCAATGGATCCAAGTTCGAAACATGGCAACCCTGAAAGAC
ATTACCAGGAGACTGAAGTCCATCAAAAACATCCAGAAGATTACCAAGTCTATGAAGATGGTGG
CAGCAGCGAAGTACGCCCGGGCTGAGCGGGAGCTGAAGCCAGCTCGAGTGTATGGGACAGGCTC
CTTGGCTCTGTATGAGAAGGCTGAGATTAAGGGACCTGAGGACAAGAAGAAGCACCTCATTATT
GGTGTGTCCTCGGATCGAGGCCTTTGTGGTGCTATTCATTCCTCCGTGGCTAAACAAATGAAGA
ATGACATGGCTGCCCTCACAGCAGCTGGGAAAGAAGTTATGATTGTTGGAATTGGTGAAAAAAT
CAAGAGCATACTTTATAGGACTCACTCTGATCAGTTTTTGGTGTCCTTCAAAGACGTGGGGCGG
AAGCCCCCTACTTTTGGAGATGCATCGGTCATTGCCTTGGAGTTGTTAAATTCGGGATATGAAT
TTGATGAAGGCTCTATTATCTTTAATCAGTTCAAGTCTGTTATCTCCTACAAGACAGAAGAGAA
GCCCATCTTCTCTTTCAGTACCGTCGTGGCTGCTGAGAACATGAGCATTTATGATGACATTGAT
GCTGACGTGCTGCAGAATTACCAGGAATACAATCTGGCCAACATCATCTACTACTCCCTGAAGG
AGTCCACCACCAGTGAGCAGAGTGCCAGGATGACCGCCATGGACAACGCCAGCAAGAACGCCTC
TGATATGATTGATAAATTGACGCTGACTTTCAACCGCACCCGCCAGGCCGTCATCACGAAGGAG
CTGATAGAGATCATCTCCGGGGCTGCTGCTCTGGATTAATGAGAATCAAGTTACATCCTCAGAC
AAGAGGTGAAGAAGGAAAACGCAGCTGATTTTAACTGATTGCTGTCCTTGTTAGAAGAAACTTG
GTCCACTGAGTCACAAAGACAGCAGGATGTTTGTAAATTATCTTACAATAAACAACTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254229 ⟹ XP_006254291

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	68,423,927 - 68,446,169 (+)	NCBI
Rnor_6.0	17	72,209,321 - 72,231,562 (+)	NCBI
Rnor_5.0	17	73,895,019 - 73,917,300 (+)	NCBI

Sequence:

show sequence

GAGACTGAGGGCGCTAGCGGAGCAGGCCGCTGCTCCCCGAGCTCCCGCGCACGCGCAGTGAGCC
TCGTCTGCCCGACCTTCAAGGTTCTACCATGTTCTCGCGGGCGAGTATTGTCGGGCTGTCGGCC
TGCTCCTTGCAGCCGCAATGGATCCAAGTTCGAAACATGGCAACCCTGAAAGACATTACCAGGA
GACTGAAGTCCATCAAAAACATCCAGAAGATTACCAAGTCTATGAAGATGGTGGCAGCAGCGAA
GTACGCCCGGGCTGAGCGGGAGCTGAAGCCAGCTCGAGTGTATGGGACAGGCTCCTTGGCTCTG
TATGAGAAGGCTGAGATTAAGGGACCTGAGGACAAGAAGAAGCACCTCATTATTGGTGTGTCCT
CGGATCGAGGCCTTTGTGGTGCTATTCATTCCTCCGTGGCTAAACAAATGAAGAATGACATGGC
TGCCCTCACAGCAGCTGGGAAAGAAGTTATGATTGTTGGAATTGGTGAAAAAATCAAGAGCATA
CTTTATAGGACTCACTCTGATCAGTTTTTGGTGTCCTTCAAAGACGTGGGGCGGAAGCCCCCTA
CTTTTGGAGATGCATCGGTCATTGCCTTGGAGTTGTTAAATTCGGGATATGAATTTGATGAAGG
CTCTATTATCTTTAATCAGTTCAAGTCTGTTATCTCCTACAAGACAGAAGAGAAGCCCATCTTC
TCTTTCAGTACCGTCGTGGCTGCTGAGAACATGAGCATTTATGATGACATTGATGCTGACGTGC
TGCAGAATTACCAGGAATACAATCTGGCCAACATCATCTACTACTCCCTGAAGGAGTCCACCAC
CAGTGAGCAGAGTGCCAGGATGACCGCCATGGACAACGCCAGCAAGAACGCCTCTGATATGATT
GATAAATTGACGCTGACTTTCAACCGCACCCGCCAGGCCGTCATCACGAAGGAGCTGATAGAGA
TCATCTCCGGGGCTGCTGCTCTGTGAAGAAGGAAAACGCAGCTGATTTTAACTGATTGCTGTCC
TTGTTAGAAGAAACTTGGTCCACTGAGTCACAAAGACAGCAGGATGTTTGTAAATTATCTTACA
ATAAACAACTTACAATGAGAAA

hide sequence

RefSeq Acc Id:

XM_006254230 ⟹ XP_006254292

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	68,423,935 - 68,443,075 (+)	NCBI
Rnor_6.0	17	72,209,413 - 72,228,466 (+)	NCBI
Rnor_5.0	17	73,895,019 - 73,917,300 (+)	NCBI

Sequence:

show sequence

ATGTTCTCGCGGGCGAGTATTGTCGGGCTGTCGGCCTGCTCCTTGCAGCCGCAATGGATCCAAG
TTCGAAACATGGCAACCCTGAAAGACATTACCAGGAGACTGAAGTCCATCAAAAACATCCAGAA
GATTACCAAGTCTATGAAGATGGTGGCAGCAGCGAAGTACGCCCGGGCTGAGCGGGAGCTGAAG
CCAGCTCGAGTGTATGGGACAGGCTCCTTGGCTCTGTATGAGAAGGCTGAGATTAAGGGACCTG
AGGACAAGAAGAAGCACCTCATTATTGGTGTGTCCTCGGATCGAGGCCTTTGTGGTGCTATTCA
TTCCTCCGTGGCTAAACAAATGAAGAATGACATGGCTGCCCTCACAGCAGCTGGGAAAGAAGTT
ATGATTGTTGGAATTGGTGAAAAAATCAAGAGCATACTTTATAGGACTCACTCTGATCAGTTTT
TGGTGTCCTTCAAAGACGTGGGGCGGAAGCCCCCTACTTTTGGAGATGCATCGGTCATTGCCTT
GGAGTTGTTAAATTCGGGATATGAATTTGATGAAGGCTCTATTATCTTTAATCAGTTCAAGTCT
GTTATCTCCTACAAGACAGAAGAGAAGCCCATCTTCTCTTTCAGTACCGTCGTGGCTGCTGAGA
ACATGAGCATTTATGATGACATTGATGCTGACGTGCTGCAGAATTACCAGGAATACAATCTGGC
CAACATCATCTACTACTCCCTGAAGGAGTCCACCACCAGTGAGCAGAGTGCCAGGATGACCGCC
ATGGACAACGCCAGCAAGAACGCCTCTGATATGATTGATAAATTGACGCTGACTTTCAACCGCA
CCCGCCAGGCCGTCATCACGAAGGAGCTGATAGAGATCATCTCCGGGGCTGCTGCTCTGTAA

hide sequence

RefSeq Acc Id:

XM_006254231 ⟹ XP_006254293

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	68,431,525 - 68,446,169 (+)	NCBI
Rnor_6.0	17	72,216,880 - 72,231,556 (+)	NCBI
Rnor_5.0	17	73,895,019 - 73,917,300 (+)	NCBI

Sequence:

show sequence

GGGCAGTTAAAGGTTGCTGAGGAAGGAAGAGACATTTTTTCCCACTGGTGCTAGCACTGGATCC
AAGTTCGAAACATGGCAACCCTGAAAGACATTACCAGGAGACTGAAGTCCATCAAAAACATCCA
GAAGATTACCAAGTCTATGAAGATGGTGGCAGCAGCGAAGTACGCCCGGGCTGAGCGGGAGCTG
AAGCCAGCTCGAGTGTATGGGACAGGCTCCTTGGCTCTGTATGAGAAGGCTGAGATTAAGGGAC
CTGAGGACAAGAAGAAGCACCTCATTATTGGTGTGTCCTCGGATCGAGGCCTTTGTGGTGCTAT
TCATTCCTCCGTGGCTAAACAAATGAAGAATGACATGGCTGCCCTCACAGCAGCTGGGAAAGAA
GTTATGATTGTTGGAATTGGTGAAAAAATCAAGAGCATACTTTATAGGACTCACTCTGATCAGT
TTTTGGTGTCCTTCAAAGACGTGGGGCGGAAGCCCCCTACTTTTGGAGATGCATCGGTCATTGC
CTTGGAGTTGTTAAATTCGGGATATGAATTTGATGAAGGCTCTATTATCTTTAATCAGTTCAAG
TCTGTTATCTCCTACAAGACAGAAGAGAAGCCCATCTTCTCTTTCAGTACCGTCGTGGCTGCTG
AGAACATGAGCATTTATGATGACATTGATGCTGACGTGCTGCAGAATTACCAGGAATACAATCT
GGCCAACATCATCTACTACTCCCTGAAGGAGTCCACCACCAGTGAGCAGAGTGCCAGGATGACC
GCCATGGACAACGCCAGCAAGAACGCCTCTGATATGATTGATAAATTGACGCTGACTTTCAACC
GCACCCGCCAGGCCGTCATCACGAAGGAGCTGATAGAGATCATCTCCGGGGCTGCTGCTCTGGA
TTAATGAGAATCAAGTTACATCCTCAGACAAGAGGTGAAGAAGGAAAACGCAGCTGATTTTAAC
TGATTGCTGTCCTTGTTAGAAGAAACTTGGTCCACTGAGTCACAAAGACAGCAGGATGTTTGTA
AATTATCTTACAATAAACAACTTACAAT

hide sequence

RefSeq Acc Id:

XM_039095290 ⟹ XP_038951218

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	68,424,403 - 68,446,169 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446277	(Get FASTA)	NCBI Sequence Viewer
	XP_006254291	(Get FASTA)	NCBI Sequence Viewer
	XP_006254292	(Get FASTA)	NCBI Sequence Viewer
	XP_006254293	(Get FASTA)	NCBI Sequence Viewer
	XP_038951218	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41776	(Get FASTA)	NCBI Sequence Viewer
	AAH59158	(Get FASTA)	NCBI Sequence Viewer
	EDL78625	(Get FASTA)	NCBI Sequence Viewer
	P35435	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_446277 ⟸ NM_053825

- UniProtKB:

Q6PCU0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFSRASIVGLSACSLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELK
PARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEV
MIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKS
VISYKTEEKPIFSFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTA
MDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD

hide sequence

RefSeq Acc Id:

XP_006254291 ⟸ XM_006254229

- Peptide Label:

isoform X1

- Sequence:

show sequence

MFSRASIVGLSACSLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELK
PARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEV
MIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKS
VISYKTEEKPIFSFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTA
MDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL

hide sequence

RefSeq Acc Id:

XP_006254292 ⟸ XM_006254230

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFSRASIVGLSACSLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELK
PARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEV
MIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKS
VISYKTEEKPIFSFSTVVAAENMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTA
MDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAAL

hide sequence

RefSeq Acc Id:

XP_006254293 ⟸ XM_006254231

- Peptide Label:

isoform X3

- Sequence:

show sequence

MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDK
KKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVS
FKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSFSTVVAAENMS
IYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFNRTRQ
AVITKELIEIISGAAALD

hide sequence

RefSeq Acc Id:

ENSRNOP00000049879 ⟸ ENSRNOT00000041346

RefSeq Acc Id:

ENSRNOP00000068697 ⟸ ENSRNOT00000090453

RefSeq Acc Id:

ENSRNOP00000061946 ⟸ ENSRNOT00000064802

RefSeq Acc Id:

ENSRNOP00000025993 ⟸ ENSRNOT00000025993

RefSeq Acc Id:	XP_038951218 ⟸ XM_039095290
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000090262 ⟸ ENSRNOT00000104116

RefSeq Acc Id:

ENSRNOP00000076528 ⟸ ENSRNOT00000098367

RefSeq Acc Id:

ENSRNOP00000097532 ⟸ ENSRNOT00000116066

Protein Domains

BTP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P35435-F1-model_v2	AlphaFold	P35435	1-273	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700561

Promoter ID:

EPDNEW_R11084

Type:

initiation region

Name:

Atp5c1_1

Description:

ATP synthase, H+ transporting, mitochondrial F1 complex, gammapolypeptide 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	72,209,375 - 72,209,435	EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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CSV

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

Visual

CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

Visual

CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

Visual

CSV

TAB

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
17	73913564	73913565	G	A	snv	BN/SsNSlc (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620011	AgrOrtholog
BioCyc Gene	G2FUF-8755	BioCyc
BioCyc Pathway	PWY-7980 [ATP biosynthesis]	BioCyc
Ensembl Genes	ENSRNOG00000019223	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000049879	UniProtKB/TrEMBL
	ENSRNOP00000061946	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000076528	ENTREZGENE
	ENSRNOP00000090262	ENTREZGENE
Ensembl Transcript	ENSRNOT00000041346	UniProtKB/TrEMBL
	ENSRNOT00000064802	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000098367	ENTREZGENE
	ENSRNOT00000104116	ENTREZGENE
Gene3D-CATH	1.10.20.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6920493	IMAGE-MGC_LOAD
InterPro	ATP_synth_F1_ATPase_gsu	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ATP_synth_F1_gsu	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ATP_synth_F1_gsu_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTP	UniProtKB/TrEMBL
	Histone-fold	UniProtKB/TrEMBL
KEGG Report	rno:116550	UniProtKB/TrEMBL
MGC_CLONE	MGC:72961	IMAGE-MGC_LOAD
NCBI Gene	116550	ENTREZGENE
PANTHER	PTHR11693	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ATP-synt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Bromo_TP	UniProtKB/TrEMBL
PhenoGen	Atp5f1c	PhenoGen
PRINTS	ATPASEGAMMA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ATPASE_GAMMA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	BTP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52943	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	ATPsyn_F1gamma	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	ATPG_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6PCU0	ENTREZGENE, UniProtKB/TrEMBL
	Q6QI09_RAT	UniProtKB/TrEMBL
UniProt Secondary	F7FFJ9	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-01-10	Atp5f1c	ATP synthase F1 subunit gamma	Atp5c1	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Atp5c1	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Atp5c1	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)