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Gene: Atp5f1c (ATP synthase F1 subunit gamma) Rattus norvegicus
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Symbol: Atp5f1c
Name: ATP synthase F1 subunit gamma
RGD ID: 620011
Description: Contributes to ATPase activity. Involved in ATP metabolic process and cellular response to nitric oxide. Localizes to mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Biomarker of schizophrenia. Orthologous to human ATP5F1C (ATP synthase F1 subunit gamma); PARTICIPATES IN electron transport chain pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ATP synthase subunit gamma, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1; Atp5c1; F-ATPase gamma subunit
Orthologs:
Homo sapiens (human) : ATP5F1C (ATP synthase F1 subunit gamma)  HGNC  Alliance
Mus musculus (house mouse) : Atp5c1 (ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atp5f1c (ATP synthase F1 subunit gamma)
Pan paniscus (bonobo/pygmy chimpanzee) : ATP5F1C (ATP synthase F1 subunit gamma)
Canis lupus familiaris (dog) : ATP5F1C (ATP synthase F1 subunit gamma)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atp5f1c (ATP synthase F1 subunit gamma)
Sus scrofa (pig) : ATP5F1C (ATP synthase F1 subunit gamma)
Chlorocebus sabaeus (African green monkey) : ATP5F1C (ATP synthase F1 subunit gamma)
Heterocephalus glaber (naked mole-rat) : Atp5f1c (ATP synthase F1 subunit gamma)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01772,209,321 - 72,231,562 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1772,209,373 - 72,394,271 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01773,895,019 - 73,917,300 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41779,738,999 - 79,761,176 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11779,749,831 - 79,772,008 (+)NCBI
Celera1767,910,474 - 67,932,651 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Atp5f1c
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620011
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.