Tasor2 (transcription activation suppressor family member 2) - Rat Genome Database

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Gene: Tasor2 (transcription activation suppressor family member 2) Rattus norvegicus
Analyze
Symbol: Tasor2
Name: transcription activation suppressor family member 2
RGD ID: 1564456
Description: Predicted to be involved in negative regulation of gene expression, epigenetic. Predicted to be located in cytosol. Predicted to be active in nucleoplasm. Orthologous to human TASOR2 (transcription activation suppressor family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam208b; family with sequence similarity 208, member B; LOC361269; RGD1564456; similar to chromosome 10 open reading frame 18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,504,656 - 71,559,878 (+)NCBIGRCr8
mRatBN7.21766,583,554 - 66,650,127 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,594,908 - 66,649,135 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01770,245,672 - 70,299,056 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,262,363 - 70,297,751 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01771,948,197 - 72,003,681 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41777,806,664 - 77,842,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1766,100,013 - 66,154,697 (+)NCBICelera
Cytogenetic Map17q12.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Tasor2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,504,656 - 71,559,878 (+)NCBIGRCr8
mRatBN7.21766,583,554 - 66,650,127 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,594,908 - 66,649,135 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01770,245,672 - 70,299,056 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1770,262,363 - 70,297,751 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01771,948,197 - 72,003,681 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41777,806,664 - 77,842,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1766,100,013 - 66,154,697 (+)NCBICelera
Cytogenetic Map17q12.2NCBI
TASOR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38105,684,838 - 5,763,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl105,684,731 - 5,763,779 (+)EnsemblGRCh38hg38GRCh38
GRCh37105,726,801 - 5,805,703 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36105,766,807 - 5,846,949 (+)NCBINCBI36Build 36hg18NCBI36
Celera105,657,202 - 5,736,083 (+)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef105,656,947 - 5,735,843 (+)NCBIHuRef
CHM1_1105,726,741 - 5,805,643 (+)NCBICHM1_1
T2T-CHM13v2.0105,688,634 - 5,767,529 (+)NCBIT2T-CHM13v2.0
Tasor2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39133,615,905 - 3,661,108 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl133,616,035 - 3,661,108 (-)EnsemblGRCm39 Ensembl
GRCm38133,566,035 - 3,612,884 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,566,035 - 3,611,108 (-)EnsemblGRCm38mm10GRCm38
MGSCv37133,565,281 - 3,610,354 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36133,564,239 - 3,610,354 (-)NCBIMGSCv36mm8
Celera133,555,678 - 3,600,714 (-)NCBICelera
Cytogenetic Map13A1NCBI
cM Map131.99NCBI
Tasor2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542122,401,983 - 22,447,453 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542122,381,295 - 22,448,115 (+)NCBIChiLan1.0ChiLan1.0
TASOR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2818,237,908 - 18,317,213 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11018,243,210 - 18,322,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0105,725,568 - 5,804,846 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1105,710,325 - 5,789,159 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl105,710,427 - 5,789,150 (+)Ensemblpanpan1.1panPan2
TASOR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1230,170,539 - 30,244,738 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl230,170,994 - 30,244,726 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha227,200,035 - 27,274,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0230,550,701 - 30,624,767 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl230,550,722 - 30,624,789 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1227,647,387 - 27,721,494 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,483,732 - 28,557,771 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0229,202,041 - 29,276,162 (-)NCBIUU_Cfam_GSD_1.0
Tasor2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934432,611,513 - 32,687,008 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364848,777,440 - 8,815,985 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364848,776,232 - 8,842,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TASOR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1065,197,584 - 65,252,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11065,197,581 - 65,268,473 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21071,313,318 - 71,372,116 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TASOR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.195,795,849 - 5,874,740 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl95,825,192 - 5,874,013 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605111,098,009 - 11,179,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tasor2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624775625,515 - 697,534 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624775612,758 - 698,067 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tasor2
327 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:358
Count of miRNA genes:216
Interacting mature miRNAs:249
Transcripts:ENSRNOT00000048933, ENSRNOT00000065574
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174207316069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)175724672370852846Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)175900564977910000Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176364000973951021Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat

Markers in Region
D17Rat89  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01770,261,543 - 70,261,772NCBIRnor6.0
Rnor_5.01771,965,794 - 71,966,023UniSTSRnor5.0
RGSC_v3.41777,805,847 - 77,806,073UniSTSRGSC3.4
RGSC_v3.41777,805,813 - 77,806,121RGDRGSC3.4
RGSC_v3.11777,816,680 - 77,816,906RGD
Celera1766,117,184 - 66,117,410UniSTS
RH 3.4 Map17636.49RGD
RH 3.4 Map17636.49UniSTS
RH 2.0 Map17564.5RGD
SHRSP x BN Map1737.1799RGD
Cytogenetic Map17q12.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 20 22 6 18 6 1 1 67 28 41 8 1
Low 3 23 35 35 1 35 7 9 7 7 3 7
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001068906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000048933   ⟹   ENSRNOP00000051465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,595,761 - 66,649,135 (+)Ensembl
Rnor_6.0 Ensembl1770,262,363 - 70,297,751 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096239   ⟹   ENSRNOP00000082153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,614,886 - 66,649,084 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118354   ⟹   ENSRNOP00000082595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1766,594,908 - 66,649,135 (+)Ensembl
RefSeq Acc Id: NM_001427686   ⟹   NP_001414615
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,504,822 - 71,558,979 (+)NCBI
RefSeq Acc Id: XM_006254221   ⟹   XP_006254283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,509,995 - 71,559,878 (+)NCBI
mRatBN7.21766,608,531 - 66,650,127 (+)NCBI
Rnor_6.01770,259,852 - 70,299,056 (+)NCBI
Rnor_5.01771,948,197 - 72,003,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254222   ⟹   XP_006254284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,505,210 - 71,559,878 (+)NCBI
mRatBN7.21766,595,521 - 66,650,127 (+)NCBI
Rnor_6.01770,246,432 - 70,299,056 (+)NCBI
Rnor_5.01771,948,197 - 72,003,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254223   ⟹   XP_006254285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,504,656 - 71,559,878 (+)NCBI
mRatBN7.21766,594,754 - 66,650,127 (+)NCBI
Rnor_6.01770,245,673 - 70,299,056 (+)NCBI
Rnor_5.01771,948,197 - 72,003,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254224   ⟹   XP_006254286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,505,211 - 71,559,878 (+)NCBI
mRatBN7.21766,595,522 - 66,650,127 (+)NCBI
Rnor_6.01770,246,432 - 70,299,056 (+)NCBI
Rnor_5.01771,948,197 - 72,003,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096361   ⟹   XP_038952289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,504,656 - 71,558,034 (+)NCBI
mRatBN7.21766,594,751 - 66,648,190 (+)NCBI
RefSeq Acc Id: XM_039096362   ⟹   XP_038952290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81771,504,656 - 71,559,878 (+)NCBI
mRatBN7.21766,594,759 - 66,650,127 (+)NCBI
RefSeq Acc Id: XP_006254285   ⟸   XM_006254223
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZTH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254286   ⟸   XM_006254224
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZTH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254284   ⟸   XM_006254222
- Peptide Label: isoform X1
- UniProtKB: D3ZVI2 (UniProtKB/TrEMBL),   A0A8I5ZTH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254283   ⟸   XM_006254221
- Peptide Label: isoform X1
- UniProtKB: D3ZVI2 (UniProtKB/TrEMBL),   A0A8I5ZTH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000051465   ⟸   ENSRNOT00000048933
RefSeq Acc Id: XP_038952289   ⟸   XM_039096361
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZTH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952290   ⟸   XM_039096362
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000082153   ⟸   ENSRNOT00000096239
RefSeq Acc Id: ENSRNOP00000082595   ⟸   ENSRNOT00000118354
RefSeq Acc Id: NP_001414615   ⟸   NM_001427686
- UniProtKB: D3ZVI2 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVI2-F1-model_v2 AlphaFold D3ZVI2 1-2385 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564456 AgrOrtholog
BioCyc Gene G2FUF-8813 BioCyc
Ensembl Genes ENSRNOG00000018011 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048933.7 UniProtKB/TrEMBL
  ENSRNOT00000096239.1 UniProtKB/TrEMBL
  ENSRNOT00000118354.1 UniProtKB/TrEMBL
InterPro DUF3699 UniProtKB/TrEMBL
  DUF3715 UniProtKB/TrEMBL
  TASOR UniProtKB/TrEMBL
KEGG Report rno:361269 UniProtKB/TrEMBL
NCBI Gene 361269 ENTREZGENE
PANTHER PROTEIN TASOR 2 UniProtKB/TrEMBL
  PTHR16207 UniProtKB/TrEMBL
Pfam DUF3699 UniProtKB/TrEMBL
  DUF3715 UniProtKB/TrEMBL
PhenoGen Tasor2 PhenoGen
RatGTEx ENSRNOG00000018011 RatGTEx
UniProt A0A8I5ZTH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZTT1_RAT UniProtKB/TrEMBL
  D3ZVI2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-11 Tasor2  transcription activation suppressor family member 2  Fam208b  family with sequence similarity 208, member B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-12 Fam208b  family with sequence similarity 208, member B  RGD1564456  similar to chromosome 10 open reading frame 18  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564456  similar to chromosome 10 open reading frame 18   RGD1564456_predicted  similar to chromosome 10 open reading frame 18 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564456_predicted  similar to chromosome 10 open reading frame 18 (predicted)  LOC361269  similar to chromosome 10 open reading frame 18  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361269  similar to chromosome 10 open reading frame 18      Symbol and Name status set to provisional 70820 PROVISIONAL