Zmynd11 (zinc finger, MYND-type containing 11) - Rat Genome Database

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Gene: Zmynd11 (zinc finger, MYND-type containing 11) Rattus norvegicus
Analyze
Symbol: Zmynd11
Name: zinc finger, MYND-type containing 11
RGD ID: 1303252
Description: Predicted to enable several functions, including methylated histone binding activity; transcription corepressor activity; and zinc ion binding activity. Predicted to be involved in defense response to virus; negative regulation of signal transduction; and regulation of transcription elongation by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 30. Orthologous to human ZMYND11 (zinc finger MYND-type containing 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; clofibric acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BS69; MGC72621; zinc finger MYND domain-containing protein 11; zinc finger, MYND domain containing 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81765,226,907 - 65,323,278 (+)NCBIGRCr8
mRatBN7.21760,542,669 - 60,631,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1760,543,077 - 60,631,902 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1763,748,795 - 63,835,898 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01767,751,877 - 67,838,982 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01761,910,915 - 61,999,276 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01763,825,616 - 63,914,740 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1763,825,627 - 63,879,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01765,590,223 - 65,677,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41771,296,712 - 71,418,778 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11771,307,544 - 71,429,609 (+)NCBI
Celera1759,945,422 - 60,033,026 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7. microRNA-10a-5p from gastric cancer cell-derived exosomes enhances viability and migration of human umbilical vein endothelial cells by targeting zinc finger MYND-type containing 11. Zhu J, etal., Bioengineered. 2022 Jan;13(1):496-507. doi: 10.1080/21655979.2021.2009962.
Additional References at PubMed
PMID:11148209   PMID:17127430   PMID:20732415   PMID:24590075   PMID:24675531   PMID:26845565  


Genomics

Comparative Map Data
Zmynd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81765,226,907 - 65,323,278 (+)NCBIGRCr8
mRatBN7.21760,542,669 - 60,631,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1760,543,077 - 60,631,902 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1763,748,795 - 63,835,898 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01767,751,877 - 67,838,982 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01761,910,915 - 61,999,276 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01763,825,616 - 63,914,740 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1763,825,627 - 63,879,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01765,590,223 - 65,677,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41771,296,712 - 71,418,778 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11771,307,544 - 71,429,609 (+)NCBI
Celera1759,945,422 - 60,033,026 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
ZMYND11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810130,088 - 254,637 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10130,088 - 254,637 (+)EnsemblGRCh38hg38GRCh38
GRCh3710176,028 - 300,577 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610170,643 - 290,577 (+)NCBINCBI36Build 36hg18NCBI36
Celera10134,734 - 255,602 (+)NCBICelera
Cytogenetic Map10p15.3NCBI
HuRef10125,217 - 245,214 (+)NCBIHuRef
CHM1_110180,367 - 300,494 (+)NCBICHM1_1
T2T-CHM13v2.010122,992 - 247,610 (+)NCBIT2T-CHM13v2.0
Zmynd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,734,872 - 9,816,050 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl139,734,869 - 9,815,366 (-)EnsemblGRCm39 Ensembl
GRCm38139,684,836 - 9,766,014 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,684,833 - 9,765,330 (-)EnsemblGRCm38mm10GRCm38
MGSCv37139,684,082 - 9,764,454 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36139,685,016 - 9,764,377 (-)NCBIMGSCv36mm8
Celera139,628,471 - 9,708,829 (-)NCBICelera
Cytogenetic Map13A1NCBI
cM Map133.72NCBI
Zmynd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955492774,895 - 879,050 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955492775,501 - 879,051 (-)NCBIChiLan1.0ChiLan1.0
ZMYND11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2812,626,070 - 12,750,650 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11012,631,391 - 12,756,525 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010139,879 - 264,711 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110222,653 - 346,376 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10226,880 - 346,369 (+)Ensemblpanpan1.1panPan2
ZMYND11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1234,492,283 - 34,614,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl234,493,994 - 34,570,523 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha231,524,994 - 31,654,786 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0234,875,401 - 35,005,297 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl234,875,416 - 35,005,327 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1231,958,260 - 32,088,464 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0232,797,092 - 32,926,877 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,544,675 - 33,674,525 (-)NCBIUU_Cfam_GSD_1.0
Zmynd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934437,614,038 - 37,706,831 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648413,779,240 - 13,872,365 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648413,779,266 - 13,872,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYND11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1069,159,455 - 69,295,306 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11069,159,456 - 69,295,640 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21076,230,372 - 76,366,365 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYND11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19162,438 - 275,764 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9201,911 - 275,841 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660515,187,993 - 5,304,143 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmynd11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477510,723,145 - 10,830,841 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477510,723,145 - 10,830,856 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zmynd11
215 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:985
Count of miRNA genes:287
Interacting mature miRNAs:371
Transcripts:ENSRNOT00000045183, ENSRNOT00000049391
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174207316069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)175089090860781592Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)175089090860781592Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)175090919660781426Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)175724672370852846Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)175724684382046127Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)175900564977910000Rat

Markers in Region
BF415630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,545,275 - 60,545,372 (-)MAPPERmRatBN7.2
Rnor_6.01763,912,021 - 63,912,117NCBIRnor6.0
Rnor_5.01765,675,050 - 65,675,146UniSTSRnor5.0
RGSC_v3.41771,298,439 - 71,298,535UniSTSRGSC3.4
Celera1760,031,296 - 60,031,392UniSTS
RH 3.4 Map17611.2UniSTS
Cytogenetic Map17q12.1UniSTS
RH127683  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,631,568 - 60,631,783 (-)MAPPERmRatBN7.2
Rnor_6.01763,825,746 - 63,825,960NCBIRnor6.0
Rnor_5.01765,590,353 - 65,590,567UniSTSRnor5.0
RGSC_v3.41771,418,434 - 71,418,648UniSTSRGSC3.4
Celera1759,945,552 - 59,945,766UniSTS
RH 3.4 Map17585.6UniSTS
Cytogenetic Map17q12.1UniSTS
G26357  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,629,897 - 60,630,114 (-)MAPPERmRatBN7.2
Rnor_6.01763,827,415 - 63,827,631NCBIRnor6.0
Rnor_5.01765,592,022 - 65,592,238UniSTSRnor5.0
RGSC_v3.41771,416,763 - 71,416,979UniSTSRGSC3.4
Celera1759,947,221 - 59,947,437UniSTS
Cytogenetic Map17q12.1UniSTS
D10S1340E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,631,746 - 60,631,857 (-)MAPPERmRatBN7.2
Rnor_6.01763,825,672 - 63,825,782NCBIRnor6.0
Rnor_5.01765,590,279 - 65,590,389UniSTSRnor5.0
RGSC_v3.41771,418,612 - 71,418,722UniSTSRGSC3.4
Celera1759,945,478 - 59,945,588UniSTS
Cytogenetic Map17q12.1UniSTS
G06312  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,631,612 - 60,631,858 (-)MAPPERmRatBN7.2
Rnor_6.01763,825,671 - 63,825,916NCBIRnor6.0
Rnor_5.01765,590,278 - 65,590,523UniSTSRnor5.0
RGSC_v3.41771,418,478 - 71,418,723UniSTSRGSC3.4
Celera1759,945,477 - 59,945,722UniSTS
Cytogenetic Map17q12.1UniSTS
UniSTS:25682  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21760,631,746 - 60,631,847 (-)MAPPERmRatBN7.2
Rnor_6.01763,825,682 - 63,825,782NCBIRnor6.0
Rnor_5.01765,590,289 - 65,590,389UniSTSRnor5.0
Celera1759,945,488 - 59,945,588UniSTS
Cytogenetic Map17q12.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 38 11 8
Low 1 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_203366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB162617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB162618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB162619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB162620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC094595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC119638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000045183   ⟹   ENSRNOP00000046942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1760,578,357 - 60,631,902 (+)Ensembl
Rnor_6.0 Ensembl1763,825,627 - 63,879,171 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000049391   ⟹   ENSRNOP00000042280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1760,578,362 - 60,631,902 (+)Ensembl
Rnor_6.0 Ensembl1763,825,627 - 63,879,166 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096220   ⟹   ENSRNOP00000095985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1760,543,077 - 60,631,293 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103687   ⟹   ENSRNOP00000089471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1760,543,077 - 60,631,293 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110116   ⟹   ENSRNOP00000085765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1760,543,599 - 60,630,098 (+)Ensembl
RefSeq Acc Id: NM_203366   ⟹   NP_976242
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,269,721 - 65,323,278 (+)NCBI
mRatBN7.21760,578,362 - 60,631,913 (+)NCBI
Rnor_6.01763,825,616 - 63,879,166 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
RGSC_v3.41771,296,712 - 71,418,778 (+)RGD
Celera1759,945,422 - 59,998,709 (-)NCBI
Sequence:
RefSeq Acc Id: NM_203367   ⟹   NP_976243
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,269,721 - 65,323,278 (+)NCBI
mRatBN7.21760,578,362 - 60,631,913 (+)NCBI
Rnor_6.01763,825,616 - 63,879,166 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
RGSC_v3.41771,296,712 - 71,418,778 (+)RGD
Celera1759,945,422 - 59,998,709 (-)NCBI
Sequence:
RefSeq Acc Id: NM_203368   ⟹   NP_976244
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,269,721 - 65,323,278 (+)NCBI
mRatBN7.21760,578,362 - 60,631,913 (+)NCBI
Rnor_6.01763,825,616 - 63,879,166 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
RGSC_v3.41771,296,712 - 71,418,778 (+)RGD
Celera1759,945,422 - 59,998,709 (-)NCBI
Sequence:
RefSeq Acc Id: NM_203369   ⟹   NP_976245
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,909 - 65,323,278 (+)NCBI
mRatBN7.21760,543,549 - 60,631,913 (+)NCBI
Rnor_6.01763,825,616 - 63,913,844 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
RGSC_v3.41771,296,712 - 71,418,778 (+)RGD
Celera1759,945,422 - 60,033,026 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254150   ⟹   XP_006254212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,226,907 - 65,323,278 (+)NCBI
mRatBN7.21760,542,669 - 60,630,995 (+)NCBI
Rnor_6.01763,827,319 - 63,914,740 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254151   ⟹   XP_006254213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,369 - 65,323,278 (+)NCBI
mRatBN7.21760,543,111 - 60,631,913 (+)NCBI
Rnor_6.01763,825,621 - 63,914,382 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254152   ⟹   XP_006254214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,226,907 - 65,323,278 (+)NCBI
mRatBN7.21760,542,815 - 60,630,995 (+)NCBI
Rnor_6.01763,827,319 - 63,914,543 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254154   ⟹   XP_006254216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,226,907 - 65,323,278 (+)NCBI
mRatBN7.21760,542,672 - 60,631,913 (+)NCBI
Rnor_6.01763,825,616 - 63,914,739 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254155   ⟹   XP_006254217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,372 - 65,323,278 (+)NCBI
mRatBN7.21760,543,077 - 60,631,913 (+)NCBI
Rnor_6.01763,825,616 - 63,914,381 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771705   ⟹   XP_008769927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,370 - 65,323,278 (+)NCBI
mRatBN7.21760,543,111 - 60,630,995 (+)NCBI
Rnor_6.01763,827,319 - 63,914,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771707   ⟹   XP_008769929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,288 - 65,323,278 (+)NCBI
mRatBN7.21760,543,111 - 60,630,995 (+)NCBI
Rnor_6.01763,827,319 - 63,914,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771708   ⟹   XP_008769930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,351 - 65,323,278 (+)NCBI
mRatBN7.21760,543,077 - 60,631,913 (+)NCBI
Rnor_6.01763,825,616 - 63,914,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771710   ⟹   XP_008769932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,370 - 65,323,278 (+)NCBI
mRatBN7.21760,543,111 - 60,631,913 (+)NCBI
Rnor_6.01763,825,616 - 63,914,379 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095526   ⟹   XP_038951454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
mRatBN7.21760,543,587 - 60,630,995 (+)NCBI
RefSeq Acc Id: XM_039095527   ⟹   XP_038951455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,368 - 65,323,278 (+)NCBI
mRatBN7.21760,543,122 - 60,630,995 (+)NCBI
RefSeq Acc Id: XM_039095528   ⟹   XP_038951456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,299,482 - 65,323,278 (+)NCBI
mRatBN7.21760,608,109 - 60,630,995 (+)NCBI
RefSeq Acc Id: XM_039095529   ⟹   XP_038951457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,269,720 - 65,323,278 (+)NCBI
mRatBN7.21760,578,367 - 60,630,995 (+)NCBI
RefSeq Acc Id: XM_063276204   ⟹   XP_063132274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,240,621 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276205   ⟹   XP_063132275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276206   ⟹   XP_063132276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276208   ⟹   XP_063132278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,048 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276209   ⟹   XP_063132279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,240,621 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276210   ⟹   XP_063132280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,235,075 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276211   ⟹   XP_063132281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,252,849 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276212   ⟹   XP_063132282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276213   ⟹   XP_063132283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,226,907 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276214   ⟹   XP_063132284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,868 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276215   ⟹   XP_063132285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276217   ⟹   XP_063132287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276218   ⟹   XP_063132288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,226,907 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276219   ⟹   XP_063132289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,049 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276220   ⟹   XP_063132290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,235,115 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276221   ⟹   XP_063132291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276222   ⟹   XP_063132292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,226,907 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276223   ⟹   XP_063132293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,050 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276224   ⟹   XP_063132294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,240,621 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276226   ⟹   XP_063132296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,235,689 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276227   ⟹   XP_063132297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,235,060 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276228   ⟹   XP_063132298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276229   ⟹   XP_063132299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,226,907 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276230   ⟹   XP_063132300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276231   ⟹   XP_063132301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,226,907 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276232   ⟹   XP_063132302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,234,850 - 65,323,278 (+)NCBI
RefSeq Acc Id: XM_063276234   ⟹   XP_063132304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81765,299,484 - 65,323,278 (+)NCBI
Protein Sequences
Protein RefSeqs NP_976242 (Get FASTA)   NCBI Sequence Viewer  
  NP_976243 (Get FASTA)   NCBI Sequence Viewer  
  NP_976244 (Get FASTA)   NCBI Sequence Viewer  
  NP_976245 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254212 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254213 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254214 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254216 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254217 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769927 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769929 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769930 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769932 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951454 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951455 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951456 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951457 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132274 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132275 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132276 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132278 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132279 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132280 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132281 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132282 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132283 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132284 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132285 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132287 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132288 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132289 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132290 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132291 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132292 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132293 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132294 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132296 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132297 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132298 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132299 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132300 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132301 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132302 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132304 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH65308 (Get FASTA)   NCBI Sequence Viewer  
  BAD11083 (Get FASTA)   NCBI Sequence Viewer  
  BAD11084 (Get FASTA)   NCBI Sequence Viewer  
  BAD11085 (Get FASTA)   NCBI Sequence Viewer  
  BAD11086 (Get FASTA)   NCBI Sequence Viewer  
  EDM06969 (Get FASTA)   NCBI Sequence Viewer  
  EDM06970 (Get FASTA)   NCBI Sequence Viewer  
  EDM06971 (Get FASTA)   NCBI Sequence Viewer  
  EDM06972 (Get FASTA)   NCBI Sequence Viewer  
  EDM06973 (Get FASTA)   NCBI Sequence Viewer  
  EDM06974 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042280
  ENSRNOP00000042280.3
  ENSRNOP00000046942
  ENSRNOP00000046942.3
  ENSRNOP00000085765
  ENSRNOP00000085765.1
  ENSRNOP00000089471.1
  ENSRNOP00000095985
  ENSRNOP00000095985.1
RefSeq Acc Id: NP_976245   ⟸   NM_203369
- Peptide Label: isoform gamma
- UniProtKB: F7EXH3 (UniProtKB/TrEMBL),   Q75QC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_976242   ⟸   NM_203366
- Peptide Label: isoform alpha
- UniProtKB: A0A8I6B3K8 (UniProtKB/TrEMBL),   A6KN21 (UniProtKB/TrEMBL),   A0A8I6GI49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_976243   ⟸   NM_203367
- Peptide Label: isoform beta
- UniProtKB: F7FKH2 (UniProtKB/TrEMBL),   Q75QC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_976244   ⟸   NM_203368
- Peptide Label: isoform delta
- UniProtKB: Q75QC4 (UniProtKB/TrEMBL),   A0A8I6A4T1 (UniProtKB/TrEMBL),   A6KN19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254216   ⟸   XM_006254154
- Peptide Label: isoform X3
- UniProtKB: F7FKH2 (UniProtKB/TrEMBL),   Q75QC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254212   ⟸   XM_006254150
- Peptide Label: isoform X1
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254214   ⟸   XM_006254152
- Peptide Label: isoform X1
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254213   ⟸   XM_006254151
- Peptide Label: isoform X1
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254217   ⟸   XM_006254155
- Peptide Label: isoform X3
- UniProtKB: F7FKH2 (UniProtKB/TrEMBL),   Q75QC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769929   ⟸   XM_008771707
- Peptide Label: isoform X8
- UniProtKB: F7EXH3 (UniProtKB/TrEMBL),   Q75QC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769927   ⟸   XM_008771705
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769932   ⟸   XM_008771710
- Peptide Label: isoform X11
- UniProtKB: A0A8I6A4T1 (UniProtKB/TrEMBL),   A6KN19 (UniProtKB/TrEMBL),   Q75QC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769930   ⟸   XM_008771708
- Peptide Label: isoform X9
- UniProtKB: A0A8I6B3K8 (UniProtKB/TrEMBL),   A6KN21 (UniProtKB/TrEMBL),   A0A8I6GI49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000046942   ⟸   ENSRNOT00000045183
RefSeq Acc Id: ENSRNOP00000042280   ⟸   ENSRNOT00000049391
RefSeq Acc Id: XP_038951455   ⟸   XM_039095527
- Peptide Label: isoform X5
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951454   ⟸   XM_039095526
- Peptide Label: isoform X1
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951457   ⟸   XM_039095529
- Peptide Label: isoform X13
- UniProtKB: Q75QC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951456   ⟸   XM_039095528
- Peptide Label: isoform X13
- UniProtKB: Q75QC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000085765   ⟸   ENSRNOT00000110116
RefSeq Acc Id: ENSRNOP00000095985   ⟸   ENSRNOT00000096220
RefSeq Acc Id: ENSRNOP00000089471   ⟸   ENSRNOT00000103687
RefSeq Acc Id: XP_063132292   ⟸   XM_063276222
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL),   A0A8I6B3K8 (UniProtKB/TrEMBL),   A6KN21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132283   ⟸   XM_063276213
- Peptide Label: isoform X4
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132299   ⟸   XM_063276229
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132288   ⟸   XM_063276218
- Peptide Label: isoform X8
- UniProtKB: Q75QC5 (UniProtKB/TrEMBL),   F7EXH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132301   ⟸   XM_063276231
- Peptide Label: isoform X11
- UniProtKB: Q75QC4 (UniProtKB/TrEMBL),   A0A8I6A4T1 (UniProtKB/TrEMBL),   A6KN19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132278   ⟸   XM_063276208
- Peptide Label: isoform X3
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL),   F7FKH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132289   ⟸   XM_063276219
- Peptide Label: isoform X8
- UniProtKB: Q75QC5 (UniProtKB/TrEMBL),   F7EXH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132293   ⟸   XM_063276223
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL),   A0A8I6B3K8 (UniProtKB/TrEMBL),   A6KN21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132285   ⟸   XM_063276215
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132275   ⟸   XM_063276205
- Peptide Label: isoform X2
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132287   ⟸   XM_063276217
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132276   ⟸   XM_063276206
- Peptide Label: isoform X3
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL),   F7FKH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132291   ⟸   XM_063276221
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL),   A0A8I6B3K8 (UniProtKB/TrEMBL),   A6KN21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132282   ⟸   XM_063276212
- Peptide Label: isoform X4
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132298   ⟸   XM_063276228
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132300   ⟸   XM_063276230
- Peptide Label: isoform X11
- UniProtKB: Q75QC4 (UniProtKB/TrEMBL),   A0A8I6A4T1 (UniProtKB/TrEMBL),   A6KN19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132302   ⟸   XM_063276232
- Peptide Label: isoform X12
- UniProtKB: Q75QC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132284   ⟸   XM_063276214
- Peptide Label: isoform X5
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132297   ⟸   XM_063276227
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL),   A0A8I6B3K8 (UniProtKB/TrEMBL),   A6KN21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132280   ⟸   XM_063276210
- Peptide Label: isoform X3
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL),   F7FKH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132290   ⟸   XM_063276220
- Peptide Label: isoform X8
- UniProtKB: Q75QC5 (UniProtKB/TrEMBL),   F7EXH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132296   ⟸   XM_063276226
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL),   A0A8I6B3K8 (UniProtKB/TrEMBL),   A6KN21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132274   ⟸   XM_063276204
- Peptide Label: isoform X1
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132279   ⟸   XM_063276209
- Peptide Label: isoform X3
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL),   F7FKH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132294   ⟸   XM_063276224
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GI49 (UniProtKB/TrEMBL),   A0A8I6B3K8 (UniProtKB/TrEMBL),   A6KN21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132281   ⟸   XM_063276211
- Peptide Label: isoform X3
- UniProtKB: Q75QC6 (UniProtKB/TrEMBL),   F7FKH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132304   ⟸   XM_063276234
- Peptide Label: isoform X14
- UniProtKB: Q75QC4 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7FKH2-F1-model_v2 AlphaFold F7FKH2 1-658 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303252 AgrOrtholog
BioCyc Gene G2FUF-8913 BioCyc
Ensembl Genes ENSRNOG00000014670 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045183 ENTREZGENE
  ENSRNOT00000045183.5 UniProtKB/TrEMBL
  ENSRNOT00000049391 ENTREZGENE
  ENSRNOT00000049391.6 UniProtKB/TrEMBL
  ENSRNOT00000096220.1 UniProtKB/TrEMBL
  ENSRNOT00000103687.1 UniProtKB/TrEMBL
  ENSRNOT00000110116 ENTREZGENE
  ENSRNOT00000110116.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  6.10.140.2220 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5599817 IMAGE-MGC_LOAD
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  PWWP_BS69 UniProtKB/TrEMBL
  SAMD1-like_WH UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  ZMY11 UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_MYND UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:291259 UniProtKB/TrEMBL
MGC_CLONE MGC:72621 IMAGE-MGC_LOAD
NCBI Gene 291259 ENTREZGENE
PANTHER ZINC FINGER MYND DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 11 UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  SAMD1_WH UniProtKB/TrEMBL
PhenoGen Zmynd11 PhenoGen
PROSITE BROMODOMAIN_2 UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  SAMD1_WH UniProtKB/TrEMBL
  ZF_MYND_1 UniProtKB/TrEMBL
  ZF_MYND_2 UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014670 RatGTEx
SMART BROMO UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  FYVE_PHD_ZnF UniProtKB/TrEMBL
  HIT/MYND zinc finger-like UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A8I6A4T1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B3K8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GI49 ENTREZGENE, UniProtKB/TrEMBL
  A6KN19 ENTREZGENE, UniProtKB/TrEMBL
  A6KN21 ENTREZGENE, UniProtKB/TrEMBL
  A6KN22_RAT UniProtKB/TrEMBL
  F7EXH3 ENTREZGENE, UniProtKB/TrEMBL
  F7FKH2 ENTREZGENE, UniProtKB/TrEMBL
  Q75QC4 ENTREZGENE, UniProtKB/TrEMBL
  Q75QC5 ENTREZGENE, UniProtKB/TrEMBL
  Q75QC6 ENTREZGENE, UniProtKB/TrEMBL
  Q75QC7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Zmynd11  zinc finger, MYND-type containing 11  Zmynd11  zinc finger, MYND domain containing 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Zmynd11  zinc finger, MYND domain containing 11  BS69  BS69 protein  Symbol and Name updated 1299863 APPROVED
2005-09-30 BS69        Symbol and Name status set to provisional 70820 PROVISIONAL