Zmynd11 (zinc finger, MYND-type containing 11) - Rat Genome Database
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Gene: Zmynd11 (zinc finger, MYND-type containing 11) Rattus norvegicus
Analyze
Symbol: Zmynd11
Name: zinc finger, MYND-type containing 11
RGD ID: 1303252
Description: Predicted to have several functions, including methylated histone binding activity; transcription corepressor activity; and zinc ion binding activity. Predicted to be involved in defense response to virus; negative regulation of signal transduction; and regulation of transcription elongation from RNA polymerase II promoter. Predicted to localize to nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 30. Orthologous to human ZMYND11 (zinc finger MYND-type containing 11); INTERACTS WITH bisphenol A; clofibric acid; copper atom.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BS69; MGC72621; zinc finger MYND domain-containing protein 11; zinc finger, MYND domain containing 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01763,825,616 - 63,914,740 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1763,825,627 - 63,879,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01765,590,223 - 65,677,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41771,296,712 - 71,418,778 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11771,307,544 - 71,429,609 (+)NCBI
Celera1759,945,422 - 60,033,026 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:11148209   PMID:17127430   PMID:20732415   PMID:24590075   PMID:24675531   PMID:26845565  


Genomics

Comparative Map Data
Zmynd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01763,825,616 - 63,914,740 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1763,825,627 - 63,879,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01765,590,223 - 65,677,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41771,296,712 - 71,418,778 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11771,307,544 - 71,429,609 (+)NCBI
Celera1759,945,422 - 60,033,026 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
ZMYND11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10134,465 - 254,637 (+)EnsemblGRCh38hg38GRCh38
GRCh3810130,088 - 254,637 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710180,405 - 300,577 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610170,643 - 290,577 (+)NCBINCBI36hg18NCBI36
Celera10134,734 - 255,602 (+)NCBI
Cytogenetic Map10p15.3NCBI
HuRef10125,217 - 245,214 (+)NCBIHuRef
CHM1_110180,367 - 300,494 (+)NCBICHM1_1
Zmynd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,734,872 - 9,816,050 (-)NCBIGRCm39mm39
GRCm38139,684,836 - 9,766,014 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,684,833 - 9,765,330 (-)EnsemblGRCm38mm10GRCm38
MGSCv37139,684,082 - 9,764,454 (-)NCBIGRCm37mm9NCBIm37
MGSCv36139,685,016 - 9,764,377 (-)NCBImm8
Celera139,628,471 - 9,708,829 (-)NCBICelera
Cytogenetic Map13A1NCBI
Zmynd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955492774,895 - 879,050 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955492775,501 - 879,051 (-)NCBIChiLan1.0ChiLan1.0
ZMYND11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110222,653 - 346,376 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10226,880 - 346,369 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010139,879 - 264,711 (+)NCBIMhudiblu_PPA_v0panPan3
ZMYND11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl234,493,994 - 34,570,523 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1234,492,283 - 34,614,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Zmynd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648413,779,266 - 13,872,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYND11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1069,159,455 - 69,295,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11069,159,456 - 69,295,640 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21076,230,372 - 76,366,365 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYND11
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl9201,911 - 275,841 (+)Ensembl
ChlSab1.19162,438 - 275,764 (+)NCBI
Zmynd11
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477510,723,145 - 10,830,856 (-)NCBI

Position Markers
BF415630  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01763,912,021 - 63,912,117NCBIRnor6.0
Rnor_5.01765,675,050 - 65,675,146UniSTSRnor5.0
RGSC_v3.41771,298,439 - 71,298,535UniSTSRGSC3.4
Celera1760,031,296 - 60,031,392UniSTS
Cytogenetic Map17q12.1UniSTS
RH 3.4 Map17611.2UniSTS
RH127683  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01763,825,746 - 63,825,960NCBIRnor6.0
Rnor_5.01765,590,353 - 65,590,567UniSTSRnor5.0
RGSC_v3.41771,418,434 - 71,418,648UniSTSRGSC3.4
Celera1759,945,552 - 59,945,766UniSTS
Cytogenetic Map17q12.1UniSTS
RH 3.4 Map17585.6UniSTS
G26357  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01763,827,415 - 63,827,631NCBIRnor6.0
Rnor_5.01765,592,022 - 65,592,238UniSTSRnor5.0
RGSC_v3.41771,416,763 - 71,416,979UniSTSRGSC3.4
Celera1759,947,221 - 59,947,437UniSTS
Cytogenetic Map17q12.1UniSTS
D10S1340E  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01763,825,672 - 63,825,782NCBIRnor6.0
Rnor_5.01765,590,279 - 65,590,389UniSTSRnor5.0
RGSC_v3.41771,418,612 - 71,418,722UniSTSRGSC3.4
Celera1759,945,478 - 59,945,588UniSTS
Cytogenetic Map17q12.1UniSTS
G06312  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01763,825,671 - 63,825,916NCBIRnor6.0
Rnor_5.01765,590,278 - 65,590,523UniSTSRnor5.0
RGSC_v3.41771,418,478 - 71,418,723UniSTSRGSC3.4
Celera1759,945,477 - 59,945,722UniSTS
Cytogenetic Map17q12.1UniSTS
UniSTS:25682  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01763,825,682 - 63,825,782NCBIRnor6.0
Rnor_5.01765,590,289 - 65,590,389UniSTSRnor5.0
Celera1759,945,488 - 59,945,588UniSTS
Cytogenetic Map17q12.1UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17173413148Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17173413148Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17333697273413148Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17333697273413148Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17333697273413148Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172149095066490950Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172149095066490950Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172149095066490950Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172149095066490950Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172149095066490950Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172149095074823273Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172277506564946194Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172769095963994435Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172841314873413148Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173097522875975228Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173097522875975228Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173205588277922655Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173330362778303627Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173330362785321557Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173628324577922655Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173779030673413148Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)174117605786176057Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)174117605786176057Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174173108086731080Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174254187285446768Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174295602163994435Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174435615789356157Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174866025273413148Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174866025273413148Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)175241095790843779Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)175241095790843779Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175347518090690466Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175387148890843779Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175399194790843779Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175622429686731080Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)176039717763994347Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)176135530067004384Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)176219570373981731Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)176219570374702206Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)176219582286194199Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176367597570261772Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:985
Count of miRNA genes:287
Interacting mature miRNAs:371
Transcripts:ENSRNOT00000045183, ENSRNOT00000049391
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 38 11 8
Low 1 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_203366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_203369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAHX01092142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01092143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01092144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01092145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01092146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01092147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB162617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB162618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB162619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB162620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC094595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC119638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000045183   ⟹   ENSRNOP00000046942
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1763,825,627 - 63,879,171 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000049391   ⟹   ENSRNOP00000042280
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1763,825,627 - 63,879,166 (-)Ensembl
RefSeq Acc Id: NM_203366   ⟹   NP_976242
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,616 - 63,879,166 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
RGSC_v3.41771,296,712 - 71,418,778 (+)RGD
Celera1759,945,422 - 59,998,709 (-)NCBI
Sequence:
RefSeq Acc Id: NM_203367   ⟹   NP_976243
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,616 - 63,879,166 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
RGSC_v3.41771,296,712 - 71,418,778 (+)RGD
Celera1759,945,422 - 59,998,709 (-)NCBI
Sequence:
RefSeq Acc Id: NM_203368   ⟹   NP_976244
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,616 - 63,879,166 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
RGSC_v3.41771,296,712 - 71,418,778 (+)RGD
Celera1759,945,422 - 59,998,709 (-)NCBI
Sequence:
RefSeq Acc Id: NM_203369   ⟹   NP_976245
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,616 - 63,913,844 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
RGSC_v3.41771,296,712 - 71,418,778 (+)RGD
Celera1759,945,422 - 60,033,026 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254150   ⟹   XP_006254212
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,827,319 - 63,914,740 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254151   ⟹   XP_006254213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,621 - 63,914,382 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254152   ⟹   XP_006254214
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,827,319 - 63,914,543 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254154   ⟹   XP_006254216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,616 - 63,914,739 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254155   ⟹   XP_006254217
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,616 - 63,914,381 (-)NCBI
Rnor_5.01765,590,223 - 65,677,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771704   ⟹   XP_008769926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,827,319 - 63,914,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771705   ⟹   XP_008769927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,827,319 - 63,914,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771706   ⟹   XP_008769928
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,827,319 - 63,854,238 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771707   ⟹   XP_008769929
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,827,319 - 63,914,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771708   ⟹   XP_008769930
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,616 - 63,914,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771709   ⟹   XP_008769931
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,827,319 - 63,914,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771710   ⟹   XP_008769932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,825,616 - 63,914,379 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771711   ⟹   XP_008769933
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01763,827,319 - 63,914,380 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_976242 (Get FASTA)   NCBI Sequence Viewer  
  NP_976243 (Get FASTA)   NCBI Sequence Viewer  
  NP_976244 (Get FASTA)   NCBI Sequence Viewer  
  NP_976245 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254212 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254213 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254214 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254216 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254217 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769926 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769927 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769928 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769929 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769930 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769931 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769932 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769933 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH65308 (Get FASTA)   NCBI Sequence Viewer  
  BAD11083 (Get FASTA)   NCBI Sequence Viewer  
  BAD11084 (Get FASTA)   NCBI Sequence Viewer  
  BAD11085 (Get FASTA)   NCBI Sequence Viewer  
  BAD11086 (Get FASTA)   NCBI Sequence Viewer  
  EDM06969 (Get FASTA)   NCBI Sequence Viewer  
  EDM06970 (Get FASTA)   NCBI Sequence Viewer  
  EDM06971 (Get FASTA)   NCBI Sequence Viewer  
  EDM06972 (Get FASTA)   NCBI Sequence Viewer  
  EDM06973 (Get FASTA)   NCBI Sequence Viewer  
  EDM06974 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_976245   ⟸   NM_203369
- Peptide Label: gamma isoform
- UniProtKB: F7EXH3 (UniProtKB/TrEMBL),   Q75QC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_976242   ⟸   NM_203366
- Peptide Label: alpha isoform
- UniProtKB: Q75QC5 (UniProtKB/TrEMBL),   Q75QC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_976243   ⟸   NM_203367
- Peptide Label: beta isoform
- UniProtKB: F7FKH2 (UniProtKB/TrEMBL),   Q75QC5 (UniProtKB/TrEMBL),   Q75QC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_976244   ⟸   NM_203368
- Peptide Label: delta isoform
- UniProtKB: Q75QC4 (UniProtKB/TrEMBL),   Q75QC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254216   ⟸   XM_006254154
- Peptide Label: isoform X3
- UniProtKB: F7FKH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254212   ⟸   XM_006254150
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254214   ⟸   XM_006254152
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254213   ⟸   XM_006254151
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254217   ⟸   XM_006254155
- Peptide Label: isoform X3
- UniProtKB: F7FKH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769926   ⟸   XM_008771704
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008769929   ⟸   XM_008771707
- Peptide Label: isoform X6
- UniProtKB: F7EXH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769933   ⟸   XM_008771711
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008769931   ⟸   XM_008771709
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_008769927   ⟸   XM_008771705
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008769932   ⟸   XM_008771710
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_008769930   ⟸   XM_008771708
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008769928   ⟸   XM_008771706
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000046942   ⟸   ENSRNOT00000045183
RefSeq Acc Id: ENSRNOP00000042280   ⟸   ENSRNOT00000049391
Protein Domains
Bromo   MYND-type   PHD-type   PWWP

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303252 AgrOrtholog
Ensembl Genes ENSRNOG00000014670 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000042280 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000046942 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045183 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000049391 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5599817 IMAGE-MGC_LOAD
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  ZMYND8/11_PWWP UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_MYND UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:291259 UniProtKB/TrEMBL
MGC_CLONE MGC:72621 IMAGE-MGC_LOAD
NCBI Gene 291259 ENTREZGENE
Pfam Bromodomain UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
PhenoGen Zmynd11 PhenoGen
PROSITE BROMODOMAIN_2 UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  ZF_MYND_1 UniProtKB/TrEMBL
  ZF_MYND_2 UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  FYVE_PHD_ZnF UniProtKB/TrEMBL
UniGene Rn.38301 ENTREZGENE
UniProt F7EXH3 ENTREZGENE, UniProtKB/TrEMBL
  F7FKH2 ENTREZGENE, UniProtKB/TrEMBL
  Q75QC4 ENTREZGENE, UniProtKB/TrEMBL
  Q75QC5 ENTREZGENE, UniProtKB/TrEMBL
  Q75QC6 ENTREZGENE, UniProtKB/TrEMBL
  Q75QC7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Zmynd11  zinc finger, MYND-type containing 11  Zmynd11  zinc finger, MYND domain containing 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Zmynd11  zinc finger, MYND domain containing 11  BS69  BS69 protein  Symbol and Name updated 1299863 APPROVED
2005-09-30 BS69        Symbol and Name status set to provisional 70820 PROVISIONAL