D17Rat129 Marker Search Result - Rat Genome Database

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Marker: D17Rat129

Symbol: D17Rat129
Previously known as: oxsts9834; R0107-A10; 
RGD ID: 39786
Expected Size: 167 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81773,608,969 - 73,609,136 (+)Marker Load Pipeline
mRatBN7.21768,699,297 - 68,699,464 (+)MAPPERmRatBN7.2
Rnor_6.01772,485,341 - 72,485,507NCBIRnor6.0
Rnor_5.01774,170,417 - 74,170,583UniSTSRnor5.0
RGSC_v3.41780,046,674 - 80,046,841RGDRGSC3.4
RGSC_v3.41780,046,675 - 80,046,841UniSTSRGSC3.4
RGSC_v3.11780,057,507 - 80,057,674RGD
Celera1768,186,617 - 68,186,783UniSTS
SHRSP x BN Map1738.2699RGD
SHRSP x BN Map1738.2699UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CTGGCTCATATTTCTCCCCA
Reverse Primer CTCTGAAGTGAGACCCTGGTG
 
Template 
GTGCATGCTGCAGGTCGACTCTAGAGGATCCCCCTCTGAAGTGAGACCCTGGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGGGAGTAGTGGAGATAGAGATAGAGAAAGA
AAGAGAGACAAAGACAGAGATAGAAAGACAGAGAGAGGCAGAGACAGAGATGGGGAGAAATATG
AGCCAGAAAGGAGTCAGGGGTAGGGGAGTGGCGGGTGGGGCGGGTGTGGGTGGGTATATATGGG
CGNCAGGTAGTGGTGGATACGAAGGATATGCAGGCCGTGGTTCATGTCTGTGATTTCAGCATTC
AGGAAGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTAT
CCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAAT
GAGTGAGCTAACTCACATTATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACTGTCGT
GCCACTNCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTNTGCGTATTGGGCGCCAGGTG
GTTTTCTTTTCACAGTGAANGGCAANNTGATTGNCTTCACGNTGGNCTAGAGATTCACACGTCC
NCTNTTGNCANNGCGNATTGTTGNNGNTCNAATNGNAANNNTTANANAATANCGATAGGTTAT
Strain, Expected Size(s)

ACI/N 165 AVN/Orl 165 BBDP/Rhw 165
BBDR/Rhw 165 BC/CpbU 165 BDIX/Han 165
BDVII/Cub 165 BN-Lx/Cub 165 BN/SsNHsd 165
BP/Cub 165 BUF/Pit 165 COP/OlaHsd 165
DA/PitN 165 DON/Melb 165 F344/Pit 165
FHH/Eur 165 GH/Omr 165 GK/KyoSwe 167
IS/Kyo 163 LE/Mol 165 LEW/Pit 165
LH/Mav 165 LN/Mav 165 LOU/CHan 165
M520/N 165 MHS/Gib 167 MNR/N 165
MNRA/N 165 MNS/Gib 165 MR/Pit 165
NEDH/K 165 NP9 165 ODU/N 165
OKA/Wsl 163 OM/Ztm 165 P5C 165
PVG/Pit 171 SD/Rij 165 SHR/OlaHsd 163
SHRSP/Riv 163 SR/Jr 165 SS/Jr 165
WAG/RijKyo 165 WF/Pit 165 WIST/Nhg 165
WKY/OlaHsd 163 WN/N 165 WTC/Kyo 163


GenBank Nucleotide CH473990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1358295Aocep1Aortic cell protein QTL 16.17e-07thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)175724672370156904Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172393042179524188Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176570358081153923Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175349882882479847Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat

1 to 10 of 39 rows