Nmt2 (N-myristoyltransferase 2) - Rat Genome Database

Name: Nmt2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Nmt2 (N-myristoyltransferase 2) Rattus norvegicus

Analyze

Symbol:

Nmt2

Name:

N-myristoyltransferase 2

RGD ID:

1303175

Description:

Predicted to enable glycylpeptide N-tetradecanoyltransferase activity and peptidyl-lysine N6-myristoyltransferase activity. Predicted to be involved in N-terminal peptidyl-glycine N-myristoylation. Predicted to be located in Golgi apparatus; cytosol; and plasma membrane. Predicted to be extrinsic component of membrane. Predicted to be active in cytoplasm. Orthologous to human NMT2 (N-myristoyltransferase 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

glycylpeptide N-tetradecanoyltransferase 2; LOC291318

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NMT2 (N-myristoyltransferase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Nmt2 (N-myristoyltransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nmt2 (N-myristoyltransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NMT2 (N-myristoyltransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NMT2 (N-myristoyltransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nmt2 (N-myristoyltransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NMT2 (N-myristoyltransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NMT2 (N-myristoyltransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nmt2 (N-myristoyltransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NMT1 (N-myristoyltransferase 1)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	NMT2 (N-myristoyltransferase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nmt2 (N-myristoyltransferase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nmt2 (N-myristoyltransferase 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NMT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nmt	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nmt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	74,917,833 - 74,964,788 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	74,917,833 - 74,961,080 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	78,387,298 - 78,427,998 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	17	82,222,677 - 82,263,377 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	17	76,270,622 - 76,311,323 (-)	NCBI	Rnor_WKY
Rnor_6.0	17	78,919,235 - 78,966,013 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	78,921,793 - 78,962,476 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	80,562,797 - 80,603,205 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	86,039,838 - 86,080,243 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	86,050,670 - 86,091,076 (-)	NCBI
Celera	17	74,299,989 - 74,340,407 (-)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hypoparathyroidism-deafness-renal disease syndrome (ISO)

ovarian cyst (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (EXP)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

choline (ISO)

cobalt atom (EXP)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

curcumin (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

ethanol (ISO)

etoposide (ISO)

folic acid (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

indole-3-methanol (EXP)

iron atom (EXP)

iron(0) (EXP)

L-methionine (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

mercury atom (ISO)

mercury(0) (ISO)

mitomycin C (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (EXP)

nickel dichloride (EXP)

nickel sulfate (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sevoflurane (ISO)

silicon dioxide (ISO)

sodium tungstate (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

topotecan (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

tungsten (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

N-terminal peptidyl-glycine N-myristoylation (IBA,ISO,TAS)

N-terminal protein myristoylation (TAS)

Cellular Component

cytoplasm (IBA,ISO)

cytoplasm (TAS)

cytosol (ISO)

extrinsic component of membrane (ISO)

Golgi apparatus (ISO)

plasma membrane (ISO)

Molecular Function

glycylpeptide N-tetradecanoyltransferase activity (IBA,ISO,TAS)

peptidyl-lysine N6-myristoyltransferase activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Novel target genes of the Ah (dioxin) receptor: transcriptional induction of N-myristoyltransferase 2.	Kolluri SK, etal., Cancer Res 2001 Dec 1;61(23):8534-9.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9506952	PMID:16538398	PMID:25255805

Genomics

Comparative Map Data

Nmt2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	74,917,833 - 74,964,788 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	74,917,833 - 74,961,080 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	78,387,298 - 78,427,998 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	17	82,222,677 - 82,263,377 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	17	76,270,622 - 76,311,323 (-)	NCBI	Rnor_WKY
Rnor_6.0	17	78,919,235 - 78,966,013 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	78,921,793 - 78,962,476 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	80,562,797 - 80,603,205 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	86,039,838 - 86,080,243 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	86,050,670 - 86,091,076 (-)	NCBI
Celera	17	74,299,989 - 74,340,407 (-)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

NMT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	15,105,700 - 15,168,693 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	10	15,102,584 - 15,168,693 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	15,147,769 - 15,210,692 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	15,187,777 - 15,250,701 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	15,189,908 - 15,250,663	NCBI
Celera	10	15,076,403 - 15,139,333 (-)	NCBI		Celera
Cytogenetic Map	10	p13	NCBI
HuRef	10	15,057,910 - 15,120,095 (-)	NCBI		HuRef
CHM1_1	10	15,147,883 - 15,211,224 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	15,119,744 - 15,183,186 (-)	NCBI		T2T-CHM13v2.0

Nmt2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	3,285,249 - 3,329,914 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	3,285,249 - 3,329,914 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	3,284,212 - 3,328,877 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	3,284,212 - 3,328,877 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	3,201,560 - 3,243,641 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	3,201,560 - 3,243,641 (+)	NCBI		MGSCv36	mm8
Celera	2	3,236,029 - 3,278,108 (+)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI

Nmt2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955429	19,282,568 - 19,356,322 (+)	NCBI	ChiLan1.0	ChiLan1.0

NMT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	10	15,703,478 - 15,738,643 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	15,703,478 - 15,765,434 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	10	15,420,625 - 15,485,107 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

NMT2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	21,569,692 - 21,609,585 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	21,556,246 - 21,609,325 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	18,655,969 - 18,722,862 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	21,843,939 - 21,910,835 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	21,843,885 - 21,910,598 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	19,044,352 - 19,111,422 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	19,879,441 - 19,946,308 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	20,506,014 - 20,572,902 (+)	NCBI		UU_Cfam_GSD_1.0

Nmt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	16,153,648 - 16,198,536 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936574	5,651,758 - 5,698,033 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936574	5,653,153 - 5,698,027 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NMT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	46,647,179 - 46,722,518 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	46,647,167 - 46,722,519 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	51,413,843 - 51,452,192 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NMT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	15,081,828 - 15,145,935 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	15,080,787 - 15,145,899 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	20,627,625 - 20,708,754 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nmt2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624805	408,378 - 457,887 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nmt2
171 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	18
Count of miRNA genes:	16
Interacting mature miRNAs:	18
Transcripts:	ENSRNOT00000030228
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	53498828	82479847	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	57246843	82046127	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	59005649	77910000	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	65703580	81153923	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	71003325	81153923	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	71774621	82479847	Rat

Markers in Region

RH137920

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	74,938,671 - 74,938,910 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	78,940,074 - 78,940,312	NCBI	Rnor6.0
Rnor_5.0	17	80,580,880 - 80,581,118	UniSTS	Rnor5.0
RGSC_v3.4	17	86,057,922 - 86,058,160	UniSTS	RGSC3.4
Celera	17	74,318,071 - 74,318,309	UniSTS
RH 3.4 Map	17	766.0	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

RH138290

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	74,937,954 - 74,938,083 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	78,939,357 - 78,939,485	NCBI	Rnor6.0
Rnor_5.0	17	80,580,163 - 80,580,291	UniSTS	Rnor5.0
RGSC_v3.4	17	86,057,205 - 86,057,333	UniSTS	RGSC3.4
Celera	17	74,317,354 - 74,317,482	UniSTS
RH 3.4 Map	17	763.3	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		29	25	12	14	12	1	1	74	33	41	11	1
Low	3	14	32	29	5	29	7	10		2			7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001412419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_207590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ629217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000030228 ⟹ ENSRNOP00000035716

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	74,917,833 - 74,961,080 (-)	Ensembl
Rnor_6.0 Ensembl	17	78,921,793 - 78,962,476 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094370 ⟹ ENSRNOP00000088998

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	74,917,833 - 74,942,945 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099682 ⟹ ENSRNOP00000090038

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	74,917,833 - 74,961,080 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112511 ⟹ ENSRNOP00000078750

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	74,917,833 - 74,961,080 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119939 ⟹ ENSRNOP00000083953

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	74,917,833 - 74,961,080 (-)	Ensembl

RefSeq Acc Id:

NM_207590 ⟹ NP_997473

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	74,920,590 - 74,961,008 (-)	NCBI
Rnor_6.0	17	78,921,992 - 78,962,410 (-)	NCBI
Rnor_5.0	17	80,562,797 - 80,603,205 (-)	NCBI
RGSC_v3.4	17	86,039,838 - 86,080,243 (-)	RGD
Celera	17	74,299,989 - 74,340,407 (-)	RGD

Sequence:

show sequence

ATGGCGGAGGACAGCGAGTCTGCGGCCAGCCAGCTGAGCCTAGAGCTGGACGACCAGGACACGT
GCGGAATAGACGGAGACAATGAGGAGGAGACGGAACACGCCAAAGGAAGCCCTGGAAGGGATTT
GGGAGCAAAAAAGAAAAAGAAGAAACAGAAGAGAAAAAAGGAGAAGCCAAACTCTGGGGGTACC
AAGTCCGACTCCGCATCTGACTCCCAGGAGATTAAGATTCAGCAATCTTCTAAACACAACGCCA
TCTGGCAGCAGATTTCAGCAGGAGCAGCCATGGGTGGTGATACTATGGAAGGTGAATGGATAGA
TTTAAGAATGTATCATAAGAATCCCACCATCCCTATTCAGAAGCTACAGGACATCCAGAGAGCA
ATGGAGCTGCTCTCTGCATGCCAAGGCCCAGCCAGGAACATTGATGAGGCCACAAAACGCAGAT
ACCAGTTCTGGGACACACAGCCAGTGCCCAAATTGAATGAAGTCATAACATCTCATGGTGCAAT
TGAACCAGACAAAGACAATATCCGCCAGGAACCGTACTCTTTGCCACAAGGTTTCATGTGGGAC
ACATTAGACTTGAGTAATGCTGAAGTGCTCAAGGAGTTGTACACGTTGCTGAACGAGAATTATG
TGGAAGACGATGACAATATGTTCCGCTTTGACTACTCACCTGAGTTTCTCTTGTGGGCTCTGCG
TCCCCCAGGATGGCTTCTGCAGTGGCACTGTGGGGTCCGAGTGTCTTCCAATAAAAAGTTAGAA
GGCTTCATAAGTGCCATCCCGGCAAACATCCGAATTTATGACAGTGTGAAGAGGATGGTGGAAA
TCAACTTTCTTTGTGTGCATAAGAAACTGAGATCCAAACGGGTAGCCCCTGTGTTAATCCGGGA
AATAACTAGAAGAGTGAACCTGGAAGGCATCTTTCAGGCCGTGTATACTGCAGGAGTGGTTCTC
CCTAAGCCTGTGGCCACATGCAGGTATTGGCACCGATCCCTAAACCCCAGGAAACTGGTGGAAG
TGAAATTTTCTCATCTGAGTAGAAACATGACCTTACAGAGAACGATGAAGCTTTACAGACTTCC
AGATGTTACAAAGACTTCAGGTCTGAGACCGATGGAACCAAAAGATATCAGAGCAGTCCGAGAG
CTAATCAACGTCTACTTGAAGCAGTTTCATCTAGCTCCAGTGATGGGAGACGAAGAAGTGGCCC
ACTGGTTCCTCCCCAGGGAGCACATCATTGACACCTTTGTGGTGGAGAGCCCCAGTGGGAAGCT
GACCGACTTCCTGAGCTTCTACACACTCCCCTCCACGGTTATGCACCACCCCGCTCACAAGAGC
CTCAAGGCTGCCTATTCCTTCTACAACATTCACACAGAGACGCCCCTGCTGGACCTCATGAACG
ACGCGCTCATTATAGCCAAATTGAAAGGATTTGATGTGTTCAATGCACTAGATTTGATGGAAAA
TAAGACCTTCTTGGAAAAGCTCAAGTTTGGTATAGGAGACGGCAACTTACAGTATTATTTGTAC
AACTGGAGGTGTCCAGGGACAGACTCTGAAAAGGTTGGACTTGTTCTACAGTAG

hide sequence

RefSeq Acc Id:

XM_008771854 ⟹ XP_008770076

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	74,917,833 - 74,961,097 (-)	NCBI
Rnor_6.0	17	78,919,235 - 78,962,526 (-)	NCBI

Sequence:

show sequence

ACCAGACTCGGTGCCCGAGGGTGGGCGGCACTAGAGGGAGCTGCGGCCGCGCCCGCCCTGTCGC
GCCTTGCTTGCTGCTCGGAGCGCCGCCTCCCCAGCCGCTCGGAGCCGCCGCGATGGCGGAGGAC
AGCGAGTCTGCGGCCAGCCAGCAGAGCCTAGAGCTGGACGACCAGGACACGTGCGGAATAGACG
GAGACAATGAGGAGGAGACGGAACACGCCAAAGGAAGCCCTGGAGGGGATTTGGGAGCAAAAAA
GAAAAAGAAGAAACAGAAGAGAAAAAAGGAGAAGCCAAACTCTGGGGGTACCAAGTCCGACTCC
GCATCTGACTCCCAGGAGATTAAGATTCAGCAGTCTTCTAAACACAACGCCATCTGGCAGCAGA
TTTCAGCAGGAGCAGCCATGGCTTCCCTCTTGGCCTCACGTGATCAGTGCTCCACTAGACATAA
CTTCCAAGAATCCCACCATCCCTATTCAGAAGCTACAGGACATCCAGAGAGCAATGGAGCTGCT
CTCTGCATGCCAAGGCCCAGCCAGGAACATTGATGAGGCCACAAAACGCAGATACCAGTTCTGG
GACACACAGCCAGTGCCCAAATTGAATGAAGTCATAACATCTCATGGTGCAATTGAACCAGACA
AAGACAATATCCGCCAGGAACCGTATTCTTTGCCACAAGGTTTCATGTGGGACACATTAGACTT
GAGTAATGCTGAAGTGCTCAAGGAGTTGTACACGTTGCTGAACGAGAATTATGTGGAAGACGAT
GACAATATGTTCCGCTTTGACTACTCACCTGAGTTTCTCTTGTGGGCTCTGCGTCCCCCAGGAT
GGCTTCTGCAGTGGCACTGTGGGGTCCGAGTGTCTTCCAATAAAAAGTTAGTAGGCTTCATAAG
TGCCATCCCAGCAAACATCCGAATTTATGACAGTGTGAAGAGGATGGTGGAAATCAACTTTCTT
TGTGTGCATAAGAAACTGAGATCCAAACGGGTAGCCCCTGTGTTAATCCGGGAAATAACTAGAA
GAGTGAACCTGGAAGGCATCTTTCAGGCCGTGTATACTGCAGGAGTGGTTCTCCCTAAGCCTGT
GGCCACATGCAGGTATTGGCACCGATCCCTAAACCCCAGGAAACTGGTGGAAGTGAAATTTTCT
CATCTGAGTAGAAACATGACCTTACAGAGAACGATGAAGCTTTACAGACTTCCAGATGTTACAA
AGACTTCAGGTCTGAGACCGATGGAACCAAAAGATATCAGAGCAGTCCGAGAGCTAATCAACGT
CTACTTGAAGCAGTTTCATCTAGCTCCAGTGATGGGAGACGAAGAAGTGGCCCACTGGTTCCTC
CCCAGGGAGCACATCATTGACACCTTTGTGGTGGAGAGCCCCAGTGGGAAGCTGACCGACTTCC
TGAGCTTCTACACACTCCCCTCCACGGTTATGCACCACCCCGCTCACAAGAGCCTCAAGGCTGC
CTATTCCTTCTACAACATTCACACAGAGACGCCCCTGCTGGACCTCATGAACGACGCGCTCATT
ATAGCCAAATTGAAAGGATTTGATGTGTTCAATGCACTAGATTTGATGGAAAATAAGACCTTCT
TGGAAAAGCTCAAGTTTGGTATAGGAGACGGCAACTTACAGTATTATTTGTACAACTGGAGGTG
TCCAGGGACAGACTCTGAAAAGGTTGGACTTGTTCTACAGTAGATGGATGTTATTCCTAGAAGG
CTGACATTCTCGTTTGTTAGTGTTCTATCTAGTGATGCCTGGAACTGTCATTCCAAAGAAGAAT
AAAAGCACAAGTTGAGTGAAACTGGAGTAGTTGCTAACAATCAGAACAGATGGCCAGTTGTACA
CATTTCTAGTTAGGGTATTGGGAGCCAGTCTCCACTGTTGGCTAACGTGGGAGGGATTAAAGGT
GTCTGAGAGCTCTCACGGTAGAGAGAGGATGTTGTCTGTCTACTCTAGAAATGGTTCTGTCTCT
GTGAACCAAACAAGTGGCAGCATCATGTTATGGCCTCTGCTGTTGGGAGAGCCACTGCTGCTTT
CTGTGTGTTAAATGGTGATATACTTGTAAAACAGACAAGGATCCATGTGTATCACCCGACATGA
TGCTACTGGGAATGTTTATAGAGTTGACATGTGGTAGATACTTACTTAAGGAGCAATATGAAAA
TGTACCAGTGACTTAGCACACTTACTATCCCATAAGCATAGTAGCCAAACCAGTCATACACAGC
TTTGTCTTTTGCTCTTCAGCCAGTGGATTGTTTCAAAAGCAGAGTTTGGGGCATTTGTTCAGTG
TGCTCACTAAAGGGTACACAGCTGACGGATCAGACCTTGGGGCTGCTGTGCAATCTCATTTCTC
AGCAATGTCAAGGATGTGTGAGGGAAAGGAAGTCAAAGCTCTAAGGTCAGATCAAAGACCCAGC
GGTGGAGTAGTGCTGTCAGCACACAGATGGTCTGAATGTTTTTATTATGCAAAATTGCACATGT
TCCTTTATGCTGACTTTAATTTATCATGAAAATTGTCATGCTAATGGAAAATGTCTTACTTGTA
AATAAGTATTCATAATTTTGTTACTGAAGTTGTTTTTACCTAGAACTTAAAAACCAAGTTTCAC
AGTGTATATATGTGTGTATATGCTGCCACTAATCCAAGGGAAAATAAACTACTCGACACGGCCA
TTGTATAGACTGGGCCTTTGAGTCAGATGCCACAAAGTAGATCTTCTTCCTGCCTTTACTGCAG
TGCCTCCGCTCCAGTCCAGACATGGCATTCCCTTCCCTACTAGAAAGGAGTCACCAAATGTGAC
CTGTAGGCTGTCCCCCCTGTTGGCTGCTCTTTACAGCTCACAAACTGAGAGCTTTTGGCTTTTT
TTTTTTTTTTTTTTTAATGGTTGGGGGAAATAGTCCAAAGAATGACGTTTTGTAGCATGCAAAT
CTTAGGAAATCCAAACATTGTATCAGATTACAGCCACACCTTCATTATGTCCTACCTATGGTTG
CCTCATGCTACAAAGGGAAATCAAGTAGTTGTCACAGACTGGGCTGTACATTGCCTACAAAGTT
CGAATGTTTGCTCTCTGGCCTCCTGTGGACAGGTCCTAAATAGGCCACAAATTGTGCCATCCCT
GATAACACCACTAGAGGGGGCACCTGGGCCCCACAAGTGGTGCAGAAGTGGGACCAGTACTGTT
TCTAGACACATGACAGATTTCTCACTTTATACCATGCCCAACTGTGTCGAATTTTTAACCGAAC
ACCTTCAGGAAATGAAACTACCTATTCATTGCAGCACTATTTAGAAAGTCAGTGAGTTTGTCGA
TCTAGATTTACAACTCTTTGGGAATTAGTACACTCATTTTTATGTCTAATACAAATTGAATTTT
CAGGTCAGAATTTCCAATCAGGAATTTTGTCGTGGGCTTATTTATTATTTACCTCATGAAGAAA
CTGTTAACCATTCCTTTAGAGATTGTTATTGTAGAACTGTTACTTTAAATACACTAATAGTTAA
CGGTGGTGTCTTCATAATTTAAGCACATGAGCAGTTGGTATTTTAGAGAATCCGTAACCAGGGC
AACTGCTTGAGTATAAATAGCTATTAAAACCAAATGTAAAAGGAAGTCTCAAGTGAAGTTACAC
TGCCCTGTACTCCATATCCAAATTGTGCTGTAAGGTTTCTTCCCTTCAAAACAGGAAATTTGTC
ACCAAGAGGAACAAAGTGGGACAGCCTGTGAGTTCACCCAAAACTTGGGATGAAAAAGTTTTAA
CAATACCCTCTTACCTCCTAAACTACAGAATGATTTTCAGAGTGGATTTGTAAAGCACCGACAG
CCCCACTCCCCGCCTGAAAGACCCATCAATGTCTGTCCTCTCCCCATCTGGGTGCCATCTAGGT
TACTACTGTAGCTAAGTCTGGCTTAGGTTTTGTTGCTGTTTGTAGTTTGTTGGCTTTGCTTTTT
GTTTGGTTTTGGTGCTAGGGATCAAGCCAGGGATTATATGTGCTGGTAAGCACATATTCTGCCA
TAGAGCTGTGCCCTGATGTACTTTCGATAGATGTTACCTGTTACAAGGAAGTTAATGGTGTGCA
GGGAGGGAATTCTCATCCAGACAACCTATCAGGCTTCTTTTCTCTGTCAGTCAAGCCTTTCTGC
CAAGCCTGTGTGCATCAGTGCTTACCTACAGAGAAAGCCAAATTACCAGAGTAAAAATGACATG
GCGCTCCTGAGGACAGTGTACCGCTTAGCATTTAGTGTCTCTCCCTTGTAGCTGAGAGCCTTCC
TCAGCTGTTCACCCACCTTGCTAGACCATGTCTGTGGCTCATTTTCCAAGTTTGGTAGAGATCT
GTTAAGTGCTGTAGGAAACTGATGTTCTTGCAAGCAAGCATTGTAGCAGCCTTTAAAGCAGCAA
ATTTATATGTGCATGGACATTAGGCTTAATAAACTTTGGTTTTGTTAA

hide sequence

RefSeq Acc Id:

XM_017600494 ⟹ XP_017455983

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	74,917,833 - 74,964,786 (-)	NCBI
Rnor_6.0	17	78,919,235 - 78,966,013 (-)	NCBI

Sequence:

show sequence

AATTTTATAACCGCAGTGCTAGAGAAGCGAAGATTACAGGATCCTGGGGCTTCTGGGTCATCCA
GCCTTGCCTACTTGGTTGAATTTCAAGCCAGTATCAAACAAGACAAAACAAAACAAAAATGGTG
GCTGGTACCTGAAGAAGGAGACCCAAGGTTGTTCTCTGGCCTCCAAACACACAGGCATGCCTGT
ATGTGCATCTGCATACCCAAACATGAACATACCAACATATTTATTATTGGCTTTTAAATATACT
TTATATCTAGACATGTTATGTGTCCATGGTTATATTGAGTTATGTCATCCATACCCAGGAGGAC
TTCTGCTGTTGGACAAAAGAAAGAAGTGTAGCAAGAAGGACAAGCATCAGAGGAGATACGGCCA
ATCAAGAACCCTTGTGTATTCTTGCAGTAGACCATCTGTGCAGACCCCACTGCCTGTTCCTCAA
TTTAAATACCATATGATTCAGCAACTTTACCTCTGTATTGTCCAACAGAACTGAAAGCAAGGCC
TTGCTTTCACAGTACCCAAAGAATGGAAGAAACTCAATGTCCACTAATGAATGGACTCATAAAA
CATACAGGCAACGATGGGATAGTATTTAGCTTTCAAAGGGAAGGAAATTAACACATGCTTTAAC
ATAAAGGATGTTGAGACCATTATATTATGTGAAATAAATCAGTCTAAAAACAGGTGAAGAGCTT
AAATGACTTTTCTACAGTAATCAAATTTACATACACAAAAGTAGACTGGTAGTTCCACAGTCTG
ACGAGAAGACATAACCGGGGAGATGCTTACTGGGATTAGGGGTGAAGTTCAACCAGAGGAAATG
TTCAAGGTATAAGTAGTATGAAATGAAACCAACCTATATACTTAAAGTGTTTGACAGTAACTTC
TACATTGCATATTTTTTGACACTTAAAAACAAGTCGAACAAGACCAACTACACAATCTTGGTCT
TGTATTCCATAAGATAAGCCAAGCAGAAGGAGAAAGTCCCAAGGGCCATTTTTAACACACTGGC
AAACACTCTACACAACTGGTTTCCTCTCAACTTGGATTTCACCTTCCAGAAGCTGCCACTTGGC
TCTGACTCCTGGATGAAGCCAGAGAGAGAAGCCCCTTGGAGACTCGAAGCCCTGGAGGGGATTT
GGGAGCAAAAAAGAAAAAGAAGAAACAGAAGAGAAAAAAGGAGAAGCCAAACTCTGGGGGTACC
AAGTCCGACTCCGCATCTGACTCCCAGGAGATTAAGATTCAGCAGTCTTCTAAACACAACGCCA
TCTGGCAGCAGATTTCAGCAGGAGCAGCCATGGAATCCCACCATCCCTATTCAGAAGCTACAGG
ACATCCAGAGAGCAATGGAGCTGCTCTCTGCATGCCAAGGCCCAGCCAGGAACATTGATGAGGC
CACAAAACGCAGATACCAGTTCTGGGACACACAGCCAGTGCCCAAATTGAATGAAGTCATAACA
TCTCATGGTGCAATTGAACCAGACAAAGACAATATCCGCCAGGAACCGTATTCTTTGCCACAAG
GTTTCATGTGGGACACATTAGACTTGAGTAATGCTGAAGTGCTCAAGGAGTTGTACACGTTGCT
GAACGAGAATTATGTGGAAGACGATGACAATATGTTCCGCTTTGACTACTCACCTGAGTTTCTC
TTGTGGGCTCTGCGTCCCCCAGGATGGCTTCTGCAGTGGCACTGTGGGGTCCGAGTGTCTTCCA
ATAAAAAGTTAGTAGGCTTCATAAGTGCCATCCCAGCAAACATCCGAATTTATGACAGTGTGAA
GAGGATGGTGGAAATCAACTTTCTTTGTGTGCATAAGAAACTGAGATCCAAACGGGTAGCCCCT
GTGTTAATCCGGGAAATAACTAGAAGAGTGAACCTGGAAGGCATCTTTCAGGCCGTGTATACTG
CAGGAGTGGTTCTCCCTAAGCCTGTGGCCACATGCAGGTATTGGCACCGATCCCTAAACCCCAG
GAAACTGGTGGAAGTGAAATTTTCTCATCTGAGTAGAAACATGACCTTACAGAGAACGATGAAG
CTTTACAGACTTCCAGATGTTACAAAGACTTCAGGTCTGAGACCGATGGAACCAAAAGATATCA
GAGCAGTCCGAGAGCTAATCAACGTCTACTTGAAGCAGTTTCATCTAGCTCCAGTGATGGGAGA
CGAAGAAGTGGCCCACTGGTTCCTCCCCAGGGAGCACATCATTGACACCTTTGTGGTGGAGAGC
CCCAGTGGGAAGCTGACCGACTTCCTGAGCTTCTACACACTCCCCTCCACGGTTATGCACCACC
CCGCTCACAAGAGCCTCAAGGCTGCCTATTCCTTCTACAACATTCACACAGAGACGCCCCTGCT
GGACCTCATGAACGACGCGCTCATTATAGCCAAATTGAAAGGATTTGATGTGTTCAATGCACTA
GATTTGATGGAAAATAAGACCTTCTTGGAAAAGCTCAAGTTTGGTATAGGAGACGGCAACTTAC
AGTATTATTTGTACAACTGGAGGTGTCCAGGGACAGACTCTGAAAAGGTTGGACTTGTTCTACA
GTAGATGGATGTTATTCCTAGAAGGCTGACATTCTCGTTTGTTAGTGTTCTATCTAGTGATGCC
TGGAACTGTCATTCCAAAGAAGAATAAAAGCACAAGTTGAGTGAAACTGGAGTAGTTGCTAACA
ATCAGAACAGATGGCCAGTTGTACACATTTCTAGTTAGGGTATTGGGAGCCAGTCTCCACTGTT
GGCTAACGTGGGAGGGATTAAAGGTGTCTGAGAGCTCTCACGGTAGAGAGAGGATGTTGTCTGT
CTACTCTAGAAATGGTTCTGTCTCTGTGAACCAAACAAGTGGCAGCATCATGTTATGGCCTCTG
CTGTTGGGAGAGCCACTGCTGCTTTCTGTGTGTTAAATGGTGATATACTTGTAAAACAGACAAG
GATCCATGTGTATCACCCGACATGATGCTACTGGGAATGTTTATAGAGTTGACATGTGGTAGAT
ACTTACTTAAGGAGCAATATGAAAATGTACCAGTGACTTAGCACACTTACTATCCCATAAGCAT
AGTAGCCAAACCAGTCATACACAGCTTTGTCTTTTGCTCTTCAGCCAGTGGATTGTTTCAAAAG
CAGAGTTTGGGGCATTTGTTCAGTGTGCTCACTAAAGGGTACACAGCTGACGGATCAGACCTTG
GGGCTGCTGTGCAATCTCATTTCTCAGCAATGTCAAGGATGTGTGAGGGAAAGGAAGTCAAAGC
TCTAAGGTCAGATCAAAGACCCAGCGGTGGAGTAGTGCTGTCAGCACACAGATGGTCTGAATGT
TTTTATTATGCAAAATTGCACATGTTCCTTTATGCTGACTTTAATTTATCATGAAAATTGTCAT
GCTAATGGAAAATGTCTTACTTGTAAATAAGTATTCATAATTTTGTTACTGAAGTTGTTTTTAC
CTAGAACTTAAAAACCAAGTTTCACAGTGTATATATGTGTGTATATGCTGCCACTAATCCAAGG
GAAAATAAACTACTCGACACGGCCATTGTATAGACTGGGCCTTTGAGTCAGATGCCACAAAGTA
GATCTTCTTCCTGCCTTTACTGCAGTGCCTCCGCTCCAGTCCAGACATGGCATTCCCTTCCCTA
CTAGAAAGGAGTCACCAAATGTGACCTGTAGGCTGTCCCCCCTGTTGGCTGCTCTTTACAGCTC
ACAAACTGAGAGCTTTTGGCTTTTTTTTTTTTTTTTTTTTAATGGTTGGGGGAAATAGTCCAAA
GAATGACGTTTTGTAGCATGCAAATCTTAGGAAATCCAAACATTGTATCAGATTACAGCCACAC
CTTCATTATGTCCTACCTATGGTTGCCTCATGCTACAAAGGGAAATCAAGTAGTTGTCACAGAC
TGGGCTGTACATTGCCTACAAAGTTCGAATGTTTGCTCTCTGGCCTCCTGTGGACAGGTCCTAA
ATAGGCCACAAATTGTGCCATCCCTGATAACACCACTAGAGGGGGCACCTGGGCCCCACAAGTG
GTGCAGAAGTGGGACCAGTACTGTTTCTAGACACATGACAGATTTCTCACTTTATACCATGCCC
AACTGTGTCGAATTTTTAACCGAACACCTTCAGGAAATGAAACTACCTATTCATTGCAGCACTA
TTTAGAAAGTCAGTGAGTTTGTCGATCTAGATTTACAACTCTTTGGGAATTAGTACACTCATTT
TTATGTCTAATACAAATTGAATTTTCAGGTCAGAATTTCCAATCAGGAATTTTGTCGTGGGCTT
ATTTATTATTTACCTCATGAAGAAACTGTTAACCATTCCTTTAGAGATTGTTATTGTAGAACTG
TTACTTTAAATACACTAATAGTTAACGGTGGTGTCTTCATAATTTAAGCACATGAGCAGTTGGT
ATTTTAGAGAATCCGTAACCAGGGCAACTGCTTGAGTATAAATAGCTATTAAAACCAAATGTAA
AAGGAAGTCTCAAGTGAAGTTACACTGCCCTGTACTCCATATCCAAATTGTGCTGTAAGGTTTC
TTCCCTTCAAAACAGGAAATTTGTCACCAAGAGGAACAAAGTGGGACAGCCTGTGAGTTCACCC
AAAACTTGGGATGAAAAAGTTTTAACAATACCCTCTTACCTCCTAAACTACAGAATGATTTTCA
GAGTGGATTTGTAAAGCACCGACAGCCCCACTCCCCGCCTGAAAGACCCATCAATGTCTGTCCT
CTCCCCATCTGGGTGCCATCTAGGTTACTACTGTAGCTAAGTCTGGCTTAGGTTTTGTTGCTGT
TTGTAGTTTGTTGGCTTTGCTTTTTGTTTGGTTTTGGTGCTAGGGATCAAGCCAGGGATTATAT
GTGCTGGTAAGCACATATTCTGCCATAGAGCTGTGCCCTGATGTACTTTCGATAGATGTTACCT
GTTACAAGGAAGTTAATGGTGTGCAGGGAGGGAATTCTCATCCAGACAACCTATCAGGCTTCTT
TTCTCTGTCAGTCAAGCCTTTCTGCCAAGCCTGTGTGCATCAGTGCTTACCTACAGAGAAAGCC
AAATTACCAGAGTAAAAATGACATGGCGCTCCTGAGGACAGTGTACCGCTTAGCATTTAGTGTC
TCTCCCTTGTAGCTGAGAGCCTTCCTCAGCTGTTCACCCACCTTGCTAGACCATGTCTGTGGCT
CATTTTCCAAGTTTGGTAGAGATCTGTTAAGTGCTGTAGGAAACTGATGTTCTTGCAAGCAAGC
ATTGTAGCAGCCTTTAAAGCAGCAAATTTATATGTGCATGGACATTAGGCTTAATAAACTTTGG
TTTTGTTAA

hide sequence

RefSeq Acc Id:

XM_039095542 ⟹ XP_038951470

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	74,917,833 - 74,964,788 (-)	NCBI

RefSeq Acc Id:

XM_039095543 ⟹ XP_038951471

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	74,917,833 - 74,961,097 (-)	NCBI

RefSeq Acc Id:

XM_039095544 ⟹ XP_038951472

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	74,917,833 - 74,940,909 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001399348	(Get FASTA)	NCBI Sequence Viewer
	NP_997473	(Get FASTA)	NCBI Sequence Viewer
	XP_008770076	(Get FASTA)	NCBI Sequence Viewer
	XP_017455983	(Get FASTA)	NCBI Sequence Viewer
	XP_038951470	(Get FASTA)	NCBI Sequence Viewer
	XP_038951471	(Get FASTA)	NCBI Sequence Viewer
	XP_038951472	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAF32977	(Get FASTA)	NCBI Sequence Viewer
	EDL78702	(Get FASTA)	NCBI Sequence Viewer
	EDL78703	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_997473 ⟸ NM_207590

- Sequence:

show sequence

MAEDSESAASQLSLELDDQDTCGIDGDNEEETEHAKGSPGRDLGAKKKKKKQKRKKEKPNSGGT
KSDSASDSQEIKIQQSSKHNAIWQQISAGAAMGGDTMEGEWIDLRMYHKNPTIPIQKLQDIQRA
MELLSACQGPARNIDEATKRRYQFWDTQPVPKLNEVITSHGAIEPDKDNIRQEPYSLPQGFMWD
TLDLSNAEVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLE
GFISAIPANIRIYDSVKRMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVL
PKPVATCRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIRAVRE
LINVYLKQFHLAPVMGDEEVAHWFLPREHIIDTFVVESPSGKLTDFLSFYTLPSTVMHHPAHKS
LKAAYSFYNIHTETPLLDLMNDALIIAKLKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLY
NWRCPGTDSEKVGLVLQ

hide sequence

RefSeq Acc Id:	XP_008770076 ⟸ XM_008771854
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A9A8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRRRNTPKEALEGIWEQKRKRRNRREKRRSQTLGVPSPTPHLTPRRLRFSSLLNTTPSGSRFQ QEQPWLPSWPHVISAPLDITSKNPTIPIQKLQDIQRAMELLSACQGPARNIDEATKRRYQFWDT QPVPKLNEVITSHGAIEPDKDNIRQEPYSLPQGFMWDTLDLSNAEVLKELYTLLNENYVEDDDN MFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDSVKRMVEINFLCV HKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPVATCRYWHRSLNPRKLVEVKFSHL SRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIRAVRELINVYLKQFHLAPVMGDEEVAHWFLPR EHIIDTFVVESPSGKLTDFLSFYTLPSTVMHHPAHKSLKAAYSFYNIHTETPLLDLMNDALIIA KLKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ hide sequence

RefSeq Acc Id:

XP_017455983 ⟸ XM_017600494

- Peptide Label:

isoform X3

- Sequence:

show sequence

MKPEREAPWRLEALEGIWEQKRKRRNRREKRRSQTLGVPSPTPHLTPRRLRFSSLLNTTPSGSR
FQQEQPWNPTIPIQKLQDIQRAMELLSACQGPARNIDEATKRRYQFWDTQPVPKLNEVITSHGA
IEPDKDNIRQEPYSLPQGFMWDTLDLSNAEVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWAL
RPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDSVKRMVEINFLCVHKKLRSKRVAPVLIR
EITRRVNLEGIFQAVYTAGVVLPKPVATCRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRL
PDVTKTSGLRPMEPKDIRAVRELINVYLKQFHLAPVMGDEEVAHWFLPREHIIDTFVVESPSGK
LTDFLSFYTLPSTVMHHPAHKSLKAAYSFYNIHTETPLLDLMNDALIIAKLKGFDVFNALDLME
NKTFLEKLKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000035716 ⟸ ENSRNOT00000030228

RefSeq Acc Id:	XP_038951470 ⟸ XM_039095542
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951471 ⟸ XM_039095543
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038951472 ⟸ XM_039095544
- Peptide Label:	isoform X5

RefSeq Acc Id:

ENSRNOP00000078750 ⟸ ENSRNOT00000112511

RefSeq Acc Id:

ENSRNOP00000090038 ⟸ ENSRNOT00000099682

RefSeq Acc Id:

ENSRNOP00000088998 ⟸ ENSRNOT00000094370

RefSeq Acc Id:

ENSRNOP00000083953 ⟸ ENSRNOT00000119939

Protein Domains

Glycylpeptide N-tetradecanoyltransferase C-terminal Glycylpeptide N-tetradecanoyltransferase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M110-F1-model_v2	AlphaFold	F1M110	1-529	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700588

Promoter ID:

EPDNEW_R11112

Type:

initiation region

Name:

Nmt2_1

Description:

N-myristoyltransferase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	78,962,430 - 78,962,490	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303175	AgrOrtholog
BioCyc Gene	G2FUF-8639	BioCyc
Ensembl Genes	ENSRNOG00000026248	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000035716	ENTREZGENE
	ENSRNOP00000035716.6	UniProtKB/TrEMBL
	ENSRNOP00000078750.1	UniProtKB/TrEMBL
	ENSRNOP00000083953.1	UniProtKB/TrEMBL
	ENSRNOP00000088998	ENTREZGENE
	ENSRNOP00000088998.1	UniProtKB/TrEMBL
	ENSRNOP00000090038	ENTREZGENE
	ENSRNOP00000090038.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000030228	ENTREZGENE
	ENSRNOT00000030228.6	UniProtKB/TrEMBL
	ENSRNOT00000094370	ENTREZGENE
	ENSRNOT00000094370.1	UniProtKB/TrEMBL
	ENSRNOT00000099682	ENTREZGENE
	ENSRNOT00000099682.1	UniProtKB/TrEMBL
	ENSRNOT00000112511.1	UniProtKB/TrEMBL
	ENSRNOT00000119939.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.630.170	UniProtKB/TrEMBL
InterPro	Acyl_CoA_acyltransferase	UniProtKB/TrEMBL
	MyristoylCoA_TrFase	UniProtKB/TrEMBL
	MyristoylCoA_TrFase_C	UniProtKB/TrEMBL
	MyristoylCoA_TrFase_CS	UniProtKB/TrEMBL
	MyristoylCoA_TrFase_N	UniProtKB/TrEMBL
KEGG Report	rno:291318	UniProtKB/TrEMBL
NCBI Gene	291318	ENTREZGENE
PANTHER	GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 2	UniProtKB/TrEMBL
	Myristoyl_trans	UniProtKB/TrEMBL
Pfam	NMT	UniProtKB/TrEMBL
	NMT_C	UniProtKB/TrEMBL
PhenoGen	Nmt2	PhenoGen
PIRSF	N-myristl_transf	UniProtKB/TrEMBL
PROSITE	NMT_1	UniProtKB/TrEMBL
	NMT_2	UniProtKB/TrEMBL
Superfamily-SCOP	Acyl_CoA_acyltransferase	UniProtKB/TrEMBL
UniProt	A0A8I5ZLL5_RAT	UniProtKB/TrEMBL
	A0A8I5ZWZ4_RAT	UniProtKB/TrEMBL
	A0A8I6A8X5_RAT	UniProtKB/TrEMBL
	A0A8I6A9A8	ENTREZGENE, UniProtKB/TrEMBL
	F1M110	ENTREZGENE, UniProtKB/TrEMBL
	Q700Q7_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-13	Nmt2		LOC291318	N-myristoyltransferase 2	Symbol updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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