Cm57 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Cm57 (Cardiac mass QTL 57) Rattus norvegicus

Symbol: Cm57
Name: Cardiac mass QTL 57
RGD ID: 1581509
Also known as: Lvm13
Trait: heart left ventricle mass   (VT:0007031)    
Measurement Type: heart left ventricle weight to body weight ratio   (CMO:0000530)    
LOD Score: 4.5
P Value: 0.05
Variance: 5.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01785,183,543 - 85,236,284RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01786,907,303 - 86,961,249RGDRnor5.0
RGSC_v3.41770,094,251 - 97,296,363RGDRGSC3.4
RGSC_v3.11770,105,085 - 97,307,196RGD
Cross Type: Not Available
Strains Crossed: WKY/Cfd WKHA/Cfd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Cacnb2 is a candidate Gene for Cm57

Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
WKHA/Cfd  (IEA)
WKY/Cfd  (IEA)

References

References - curated
1. Llamas B, etal., Mamm Genome. 2005 Sep;16(9):700-11. Epub 2005 Oct 20.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1589703LOC364790similar to nuclear RNA helicase, DECD variant of DEAD box family178517357285185779Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
35735D17Rat49163178523628485236444Ratregion
35827D17Rat52157178518336585183543Ratregion
Position Markers

Flank 1: (D17Rat49)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01785,236,284 - 85,236,444NCBI
Rnor_5.01786,961,249 - 86,961,409UniSTS
Celera1780,489,408 - 80,489,568UniSTS
RH 3.4 Map17833.2RGD
RH 3.4 Map17833.2UniSTS
RH 2.0 Map17714.3RGD
SHRSP x BN Map1747.5399RGD
FHH x ACI Map1765.46RGD
Cytogenetic Map17q12.3UniSTS
Peak: (D17Rat52)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01785,183,365 - 85,183,543NCBI
Rnor_5.01786,907,125 - 86,907,303UniSTS
RGSC_v3.41792,594,163 - 92,594,341UniSTS
RGSC_v3.41792,594,162 - 92,594,341RGD
RGSC_v3.11792,604,996 - 92,605,174RGD
Celera1780,435,759 - 80,435,937UniSTS
RH 3.4 Map17830.9RGD
RH 3.4 Map17830.9UniSTS
RH 2.0 Map17697.9RGD
SHRSP x BN Map1747.5999RGD
Cytogenetic Map17q12.3UniSTS
Flank 2: (D17Rat52)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01785,183,365 - 85,183,543NCBI
Rnor_5.01786,907,125 - 86,907,303UniSTS
RGSC_v3.41792,594,163 - 92,594,341UniSTS
RGSC_v3.41792,594,162 - 92,594,341RGD
RGSC_v3.11792,604,996 - 92,605,174RGD
Celera1780,435,759 - 80,435,937UniSTS
RH 3.4 Map17830.9RGD
RH 3.4 Map17830.9UniSTS
RH 2.0 Map17697.9RGD
SHRSP x BN Map1747.5999RGD
Cytogenetic Map17q12.3UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173330362785321557Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)174117605786176057Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)174117605786176057Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174173108086731080Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174254187285446768Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174435615789356157Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)175241095790843779Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)175241095790843779Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175347518090690466Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175387148890843779Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175399194790843779Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175622429686731080Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)176219582286194199Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176751265790843779Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)176933327285183543Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)177485263085183543Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)177570542786731080Rat
1581509Cm57Cardiac mass QTL 574.50.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)178518354385236284Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details MapManager QTX used for linkage analysis; analysis was for male rats only 1578726