Eif3b (eukaryotic translation initiation factor 3, subunit B) - Rat Genome Database

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Gene: Eif3b (eukaryotic translation initiation factor 3, subunit B) Rattus norvegicus
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Symbol: Eif3b
Name: eukaryotic translation initiation factor 3, subunit B
RGD ID: 1309018
Description: Predicted to enable RNA binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in several processes, including IRES-dependent viral translational initiation; translational initiation; and viral translational termination-reinitiation. Predicted to be located in cytoplasmic stress granule. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Predicted to be active in synapse. Orthologous to human EIF3B (eukaryotic translation initiation factor 3 subunit B); PARTICIPATES IN translation initiation pathway; RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: eIF-3-eta; Eif3s9; eukaryotic translation initiation factor 3 subunit 9; eukaryotic translation initiation factor 3 subunit B; eukaryotic translation initiation factor 3, subunit 9 (eta); LOC288516; MGC112720
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,310,308 - 19,334,768 (-)NCBIGRCr8
mRatBN7.21214,196,403 - 14,220,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,196,403 - 14,220,886 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,005,307 - 15,029,761 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,628,804 - 15,653,258 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,655,518 - 14,679,974 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,285,730 - 16,310,190 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,285,733 - 16,310,190 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,278,834 - 18,303,294 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,666,974 - 14,692,130 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,647,578 - 14,722,030 (-)NCBI
Celera1215,956,056 - 15,980,516 (-)NCBICelera
Cytogenetic Map12q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif3bRathuman immunodeficiency virus infectious disease  ISORGD:131912511554173CTD Direct Evidence: marker/mechanismCTDPMID:15308739

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Object Symbol
Species
Term
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Evidence
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Reference
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Original Reference(s)
Eif3bRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of EIF3B mRNA]CTDPMID:31150632
Eif3bRat(-)-demecolcine increases expressionISORGD:13191256480464Demecolcine results in increased expression of EIF3B mRNACTDPMID:23649840
Eif3bRat(-)-epigallocatechin 3-gallate decreases expressionISORGD:13191256480464epigallocatechin gallate results in decreased expression of EIF3B proteinCTDPMID:31195006
Eif3bRat1,2-dimethylhydrazine increases expressionISORGD:131912664804641,2-Dimethylhydrazine results in increased expression of EIF3B mRNACTDPMID:22206623
Eif3bRat1,2-dimethylhydrazine multiple interactionsISORGD:13191266480464Folic Acid inhibits the reaction [1,2-Dimethylhydrazine results in increased expression of EIF3B mRNA]CTDPMID:22206623
Eif3bRat17beta-estradiol affects expressionISORGD:13191266480464Estradiol affects the expression of EIF3B mRNACTDPMID:15598610
Eif3bRat17beta-estradiol increases expressionISORGD:13191266480464Estradiol results in increased expression of EIF3B mRNACTDPMID:39298647
Eif3bRat17beta-estradiol decreases phosphorylationISORGD:13191256480464Estradiol results in decreased phosphorylation of EIF3B proteinCTDPMID:27026707
Eif3bRat17beta-estradiol increases expressionISORGD:13191256480464Estradiol results in increased expression of EIF3B mRNACTDPMID:23019147|PMID:31614463
Eif3bRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISORGD:131912564804642,2',4,4'-tetrabromodiphenyl ether analog results in increased expression of EIF3B mRNACTDPMID:19095052
Eif3bRat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISORGD:131912664804642,2',4,4'-tetrabromodiphenyl ether affects the expression of EIF3B mRNACTDPMID:30294300
Eif3bRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13191266480464Tetrachlorodibenzodioxin affects the expression of EIF3B mRNACTDPMID:21570461
Eif3bRat2,4-dinitrotoluene affects expressionEXP 64804642,4-dinitrotoluene affects the expression of EIF3B mRNACTDPMID:21346803
Eif3bRat2,6-dinitrotoluene affects expressionEXP 64804642,6-dinitrotoluene affects the expression of EIF3B mRNACTDPMID:21346803
Eif3bRat2-methylcholine affects expressionISORGD:13191256480464beta-methylcholine affects the expression of EIF3B mRNACTDPMID:21179406
Eif3bRat4,4'-sulfonyldiphenol increases expressionISORGD:13191266480464bisphenol S results in increased expression of EIF3B mRNACTDPMID:39298647
Eif3bRat4,4'-sulfonyldiphenol decreases methylationISORGD:13191256480464bisphenol S results in decreased methylation of EIF3B geneCTDPMID:31601247
Eif3bRat4-amino-2,6-dinitrotoluene affects expressionEXP 64804644-amino-2,6-dinitrotoluene affects the expression of EIF3B mRNACTDPMID:21346803
Eif3bRataflatoxin B1 increases expressionISORGD:13191256480464Aflatoxin B1 results in increased expression of EIF3B mRNACTDPMID:22100608
Eif3bRatall-trans-retinoic acid multiple interactionsISORGD:13191256480464Thiophenes analog promotes the reaction [Tretinoin results in decreased expression of EIF3B mRNA]CTDPMID:16140955

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Biological Process
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Original Reference(s)
Eif3bRatbiological_process  ND 159840701/2016: no relevant rat dataRGD 
Eif3bRatcytoplasmic translational initiation involved_inIEAUniRule:UR0001061191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRatformation of cytoplasmic translation initiation complex involved_inIEAUniRule:UR0001061191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRatIRES-dependent viral translational initiation involved_inISORGD:13191251624291 PMID:9573242RGDPMID:9573242
Eif3bRatIRES-dependent viral translational initiation involved_inIEAUniProtKB:P55884|ensembl:ENSP000003541251600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRatregulation of translational initiation involved_inISORGD:13191251624291 PMID:8995410RGDPMID:8995410
Eif3bRatregulation of translational initiation involved_inIEAUniProtKB:P55884|ensembl:ENSP000003541251600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRatregulation of translational initiation involved_inISSUniProtKB:P558841600115GO_REF:0000024UniProtGO_REF:0000024
Eif3bRattranslation involved_inIEAUniProtKB-KW:KW-06481600115GO_REF:0000043UniProtGO_REF:0000043
Eif3bRattranslational initiation involved_inISSUniProtKB:P558841600115GO_REF:0000024UniProtGO_REF:0000024
Eif3bRattranslational initiation involved_inIEAUniProtKB-KW:KW-03961600115GO_REF:0000043UniProtGO_REF:0000043
Eif3bRattranslational initiation involved_inIBAMGI:106478|PANTHER:PTN000362658|SGD:S000005888|UniProtKB:P558841600115GO_REF:0000033GO_CentralGO_REF:0000033
Eif3bRattranslational initiation involved_inISORGD:13191261624291 PMID:17581632RGDPMID:17581632
Eif3bRattranslational initiation involved_inIEAUniProtKB:Q8JZQ9|ensembl:ENSMUSP000000980761600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRattranslational initiation involved_inIEAInterPro:IPR0114001600115GO_REF:0000002InterProGO_REF:0000002
Eif3bRattranslational initiation involved_inIEAUniProtKB:P55884|ensembl:ENSP000003541251600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRattranslational initiation involved_inISORGD:13191251624291 PMID:17581632, PMID:8995410RGDPMID:17581632|PMID:8995410
Eif3bRatviral translational termination-reinitiation involved_inISORGD:13191251624291 PMID:21347434RGDPMID:21347434
Eif3bRatviral translational termination-reinitiation involved_inIEAUniProtKB:P55884|ensembl:ENSP000003541251600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Eif3bRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Eif3bRatcytoplasm located_inIEAUniRule:UR0001061191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Eif3bRatcytoplasmic stress granule located_inISSUniProtKB:P558841600115GO_REF:0000024UniProtGO_REF:0000024
Eif3bRatcytoplasmic stress granule located_inIEAUniProtKB-SubCell:SL-04961600115GO_REF:0000044UniProtGO_REF:0000044
Eif3bRatcytoplasmic stress granule located_inIEAUniProtKB:P55884|ensembl:ENSP000003541251600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRatcytoplasmic stress granule located_inISORGD:13191251624291 PMID:17984221RGDPMID:17984221
Eif3bRateukaryotic 43S preinitiation complex part_ofIEAUniRule:UR0001061191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRateukaryotic 48S preinitiation complex part_ofIEAUniRule:UR0001061191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRateukaryotic translation initiation factor 3 complex part_ofISSUniProtKB:P558841600115GO_REF:0000024UniProtGO_REF:0000024
Eif3bRateukaryotic translation initiation factor 3 complex part_ofIEAUniProtKB:Q8JZQ9|ensembl:ENSMUSP000000980761600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRateukaryotic translation initiation factor 3 complex part_ofIEAUniProtKB:P55884|ensembl:ENSP000003541251600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRateukaryotic translation initiation factor 3 complex part_ofIBAMGI:106478|PANTHER:PTN000362658|PomBase:SPAC25G10.08|SGD:S000005888|UniProtKB:P558841600115GO_REF:0000033GO_CentralGO_REF:0000033
Eif3bRateukaryotic translation initiation factor 3 complex part_ofIEAInterPro:IPR0114001600115GO_REF:0000002InterProGO_REF:0000002
Eif3bRateukaryotic translation initiation factor 3 complex part_ofISORGD:13191261624291 PMID:17581632RGDPMID:17581632
Eif3bRateukaryotic translation initiation factor 3 complex part_ofISORGD:13191251624291 PMID:17322308, PMID:17581632, PMID:18599441, PMID:25849773, PMID:8995410RGDPMID:17322308|PMID:17581632|PMID:18599441|PMID:25849773|PMID:8995410
Eif3bRateukaryotic translation initiation factor 3 complex part_ofIEAUniRule:UR0001061191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRateukaryotic translation initiation factor 3 complex, eIF3m part_ofISORGD:13191261624291 PMID:24003236RGDPMID:24003236
Eif3bRateukaryotic translation initiation factor 3 complex, eIF3m part_ofIEAUniProtKB:Q8JZQ9|ensembl:ENSMUSP000000980761600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRatsynapse is_active_inIEAUniProtKB:Q8JZQ9|ensembl:ENSMUSP000000980761600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
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Object Symbol
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Original Reference(s)
Eif3bRatnucleic acid binding enablesIEAInterPro:IPR0359791600115GO_REF:0000002InterProGO_REF:0000002
Eif3bRatprotein binding enablesIPIUniProtKB:Q9R0N38693368PMID:24882364ParkinsonsUK-UCL 
Eif3bRatprotein binding enablesISORGD:13191261624291UniProtKB:Q6NZJ6 PMID:16541103RGDPMID:16541103
Eif3bRatprotein binding enablesISORGD:13191251624291UniProtKB:O00303|UniProtKB:O00571|UniProtKB:O15371|UniProtKB:O15372|UniProtKB:O75821|UniProtKB:O75822|UniProtKB:P23443|UniProtKB:P60228|UniProtKB:Q04637|UniProtKB:Q13347|UniProtKB:Q14103|UniProtKB:Q14152|UniProtKB:Q7L2H7|UniProtKB:Q9J0X9|UniProtKB:Q9UBQ5|UniProtKB:Q9Y262 PMID:11169732, PMID:14688252, PMID:15567442, PMID:18423201, PMID:18599441, PMID:18628297, PMID:19245811, PMID:19615732, PMID:21986499, PMID:23023399, PMID:24396066, PMID:24423872, PMID:30021884, more ...RGDPMID:11169732|PMID:14688252|PMID:15567442|PMID:18423201|PMID:18599441|PMID:18628297|PMID:19245811|PMID:19615732|PMID:21986499|PMID:23023399|PMID:24396066|PMID:24423872|PMID:30021884|PMID:33961781|PMID:34819669|PMID:35271311|PMID:39251607
Eif3bRatRNA binding enablesIEAUniRule:UR000106119|UniRule:UR0004146191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRatRNA binding enablesIEAUniRule:UR0001061191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRatRNA binding enablesIEAInterPro:IPR000504|InterPro:IPR0114001600115GO_REF:0000002InterProGO_REF:0000002
Eif3bRatRNA binding enablesIEAUniProtKB:P55884|ensembl:ENSP000003541251600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRatRNA binding enablesIEAUniProtKB-KW:KW-06941600115GO_REF:0000043UniProtGO_REF:0000043
Eif3bRatRNA binding enablesISORGD:13191251624291 PMID:25849773, PMID:27462815RGDPMID:25849773|PMID:27462815
Eif3bRattranslation initiation factor activity contributes_toISORGD:13191251624291 PMID:17581632, PMID:25849773RGDPMID:17581632|PMID:25849773
Eif3bRattranslation initiation factor activity enablesIEAUniProtKB-KW:KW-03961600115GO_REF:0000043UniProtGO_REF:0000043
Eif3bRattranslation initiation factor activity contributes_toIBAMGI:106478|PANTHER:PTN000362658|UniProtKB:P558841600115GO_REF:0000033GO_CentralGO_REF:0000033
Eif3bRattranslation initiation factor activity contributes_toIEAUniProtKB:Q8JZQ9|ensembl:ENSMUSP000000980761600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRattranslation initiation factor activity enablesIEAInterPro:IPR0114001600115GO_REF:0000002InterProGO_REF:0000002
Eif3bRattranslation initiation factor activity contributes_toISORGD:13191261624291 PMID:17581632RGDPMID:17581632
Eif3bRattranslation initiation factor activity enablesIEAUniProtKB:P55884|ensembl:ENSP000003541251600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3bRattranslation initiation factor activity enablesISORGD:13191251624291 PMID:8995410RGDPMID:8995410
Eif3bRattranslation initiation factor activity enablesIEAUniRule:UR0001061191600115GO_REF:0000104UniProtGO_REF:0000104
Eif3bRattranslation initiation factor activity contributes_toISSUniProtKB:P558841600115GO_REF:0000024UniProtGO_REF:0000024
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RGD Manual Annotations


  
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Source
Original Reference(s)
Eif3bRattranslation initiation pathway  ISORGD:131912510002776 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
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Evidence
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Reference
Notes
Source
Original Reference(s)
Eif3bRatRNA transport pathway  IEA 6907045 KEGGrno:03013

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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The scanning mechanism of eukaryotic translation initiation. Hinnebusch AG Annu Rev Biochem. 2014;83:779-812. doi: 10.1146/annurev-biochem-060713-035802. Epub 2014 Jan 29.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells. Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
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PMID:8995410   PMID:9573242   PMID:12477932   PMID:15489334   PMID:16452087   PMID:16641100   PMID:17322308   PMID:17581632   PMID:18599441   PMID:20458337   PMID:21347434   PMID:24003236  
PMID:25002582   PMID:25849773   PMID:27462815   PMID:30053369  



Eif3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,310,308 - 19,334,768 (-)NCBIGRCr8
mRatBN7.21214,196,403 - 14,220,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,196,403 - 14,220,886 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,005,307 - 15,029,761 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,628,804 - 15,653,258 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,655,518 - 14,679,974 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,285,730 - 16,310,190 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,285,733 - 16,310,190 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,278,834 - 18,303,294 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,666,974 - 14,692,130 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,647,578 - 14,722,030 (-)NCBI
Celera1215,956,056 - 15,980,516 (-)NCBICelera
Cytogenetic Map12q11NCBI
EIF3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,354,086 - 2,380,745 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,354,086 - 2,380,745 (+)EnsemblGRCh38hg38GRCh38
GRCh3772,393,721 - 2,420,380 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,361,000 - 2,386,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 3472,167,741 - 2,193,616NCBI
Celera72,363,928 - 2,389,774 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef72,313,949 - 2,339,345 (+)NCBIHuRef
CHM1_172,394,083 - 2,419,909 (+)NCBICHM1_1
T2T-CHM13v2.072,467,574 - 2,494,152 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,442,541 - 2,468,274 (+)NCBI
Eif3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,405,060 - 140,429,113 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,405,083 - 140,429,115 (+)EnsemblGRCm39 Ensembl
GRCm385140,419,305 - 140,443,358 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,419,328 - 140,443,360 (+)EnsemblGRCm38mm10GRCm38
MGSCv375140,895,259 - 140,919,312 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365140,671,779 - 140,695,832 (+)NCBIMGSCv36mm8
Celera5137,477,208 - 137,501,576 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map578.97NCBI
Eif3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546012,917,389 - 12,941,126 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546012,918,349 - 12,941,150 (-)NCBIChiLan1.0ChiLan1.0
EIF3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,316,023 - 7,342,717 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,640,803 - 55,668,632 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,619,460 - 2,646,182 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,718,582 - 2,743,944 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl72,718,582 - 2,742,695 (+)Ensemblpanpan1.1panPan2
EIF3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1614,780,318 - 14,802,938 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl614,781,215 - 14,803,883 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha616,242,639 - 16,265,270 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0614,906,371 - 14,929,004 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl614,907,264 - 14,929,069 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1614,709,937 - 14,732,572 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0614,638,275 - 14,660,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0614,924,356 - 14,946,923 (-)NCBIUU_Cfam_GSD_1.0
Eif3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344142,929,948 - 142,953,382 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493682398,056 - 121,482 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493682398,056 - 121,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,645,706 - 1,666,091 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.131,645,462 - 1,666,096 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EIF3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12819,220,649 - 19,247,134 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2819,222,328 - 19,245,969 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660902,498,569 - 2,524,978 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,559,940 - 30,583,862 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,561,240 - 30,583,213 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Eif3b
85 total Variants

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:53
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000060444
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat

1 to 10 of 46 rows
RH128231  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21214,196,496 - 14,196,693 (+)MAPPERmRatBN7.2
Rnor_6.01216,285,824 - 16,286,020NCBIRnor6.0
Rnor_5.01218,278,928 - 18,279,124UniSTSRnor5.0
RGSC_v3.41214,667,068 - 14,667,264UniSTSRGSC3.4
Celera1215,956,150 - 15,956,346UniSTS
RH 3.4 Map12236.0UniSTS
Cytogenetic Map12q11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000060444   ⟹   ENSRNOP00000057188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1214,196,403 - 14,220,886 (-)Ensembl
Rnor_6.0 Ensembl1216,285,733 - 16,310,190 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099724   ⟹   ENSRNOP00000097491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1214,196,403 - 14,220,886 (-)Ensembl
RefSeq Acc Id: NM_001031640   ⟹   NP_001026810
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81219,310,308 - 19,334,768 (-)NCBI
mRatBN7.21214,196,403 - 14,220,865 (-)NCBI
Rnor_6.01216,285,730 - 16,310,190 (-)NCBI
Rnor_5.01218,278,834 - 18,303,294 (-)NCBI
RGSC_v3.41214,666,974 - 14,692,130 (-)RGD
Celera1215,956,056 - 15,980,516 (-)RGD
Sequence:
Protein RefSeqs NP_001026810 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98728 (Get FASTA)   NCBI Sequence Viewer  
  EDL89734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000057188
  ENSRNOP00000057188.1
GenBank Protein Q4G061 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001026810   ⟸   NM_001031640
- UniProtKB: Q4G061 (UniProtKB/Swiss-Prot),   A6K1S6 (UniProtKB/TrEMBL),   A0A8I6B5U9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057188   ⟸   ENSRNOT00000060444
Ensembl Acc Id: ENSRNOP00000097491   ⟸   ENSRNOT00000099724
RRM

Name Modeler Protein Id AA Range Protein Structure
AF-Q4G061-F1-model_v2 AlphaFold Q4G061 1-797 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698455
Promoter ID:EPDNEW_R8980
Type:multiple initiation site
Name:Eif3b_1
Description:eukaryotic translation initiation factor 3, subunit B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01216,310,209 - 16,310,269EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-19920 BioCyc
Ensembl Genes ENSRNOG00000001253 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000060444 ENTREZGENE
  ENSRNOT00000060444.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
  3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7381504 IMAGE-MGC_LOAD
InterPro EIF3B UniProtKB/Swiss-Prot
  eIF3B_RRM UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  TIF_beta_prop-like UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:288516 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112720 IMAGE-MGC_LOAD
NCBI Gene 288516 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT B UniProtKB/Swiss-Prot
  PTHR14068 UniProtKB/Swiss-Prot
Pfam eIF2A UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Eif3b PhenoGen
PIRSF eIF3b UniProtKB/Swiss-Prot
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001253 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
  Tricorn protease domain 2 UniProtKB/Swiss-Prot
UniProt A0A8I6B5U9 ENTREZGENE, UniProtKB/TrEMBL
  A6K1S6 ENTREZGENE, UniProtKB/TrEMBL
  EIF3B_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Eif3b  eukaryotic translation initiation factor 3, subunit B  Eif3s9  eukaryotic translation initiation factor 3, subunit 9 (eta)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Eif3s9  eukaryotic translation initiation factor 3, subunit 9 (eta)  Eif3s9_predicted  eukaryotic translation initiation factor 3, subunit 9 (eta) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Eif3s9_predicted  eukaryotic translation initiation factor 3, subunit 9 (eta) (predicted)      Symbol and Name status set to approved 70820 APPROVED