Eif6 (eukaryotic translation initiation factor 6) - Rat Genome Database

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Gene: Eif6 (eukaryotic translation initiation factor 6) Rattus norvegicus
Analyze
Symbol: Eif6
Name: eukaryotic translation initiation factor 6
RGD ID: 1305373
Description: Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in several processes, including regulation of glycolytic process; regulation of translation; and ribosome biogenesis. Predicted to be located in cytoplasm; lamin filament; and nucleoplasm. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in cytosol; nucleolus; and synapse. Orthologous to human EIF6 (eukaryotic translation initiation factor 6); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: eIF-6; integrin beta 4 binding protein; Itgb4bp; LOC305506; MGC124669
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Related Pseudogenes: Eif6-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,785,162 - 164,791,410 (-)NCBIGRCr8
mRatBN7.23144,325,038 - 144,331,396 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,325,036 - 144,331,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,190,428 - 148,196,661 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,807,695 - 156,813,928 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,547,215 - 154,553,448 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,356,867 - 151,363,201 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,356,868 - 151,363,115 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,722,078 - 157,728,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11487,483,901 - 87,491,947 (-)NCBI
Celera3143,049,279 - 143,055,527 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (ISO)
diquat  (ISO)
diuron  (EXP)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (EXP)
flutamide  (EXP)
FR900359  (ISO)
fumonisin B1  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
N-(6-acetamidohexyl)acetamide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium dichromate  (EXP)
T-2 toxin  (EXP)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
trovafloxacin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Eukaryotic initiation factor 6 mediates a continuum between 60S ribosome biogenesis and translation. Miluzio A, etal., EMBO Rep. 2009 May;10(5):459-65. doi: 10.1038/embor.2009.70. Epub 2009 Apr 17.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9374518   PMID:12426392   PMID:12477932   PMID:17507929   PMID:19056867   PMID:21536732   PMID:22082260   PMID:23376485   PMID:23533145   PMID:26383020   PMID:26391622   PMID:29128355  


Genomics

Comparative Map Data
Eif6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,785,162 - 164,791,410 (-)NCBIGRCr8
mRatBN7.23144,325,038 - 144,331,396 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,325,036 - 144,331,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,190,428 - 148,196,661 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,807,695 - 156,813,928 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,547,215 - 154,553,448 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,356,867 - 151,363,201 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,356,868 - 151,363,115 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,722,078 - 157,728,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11487,483,901 - 87,491,947 (-)NCBI
Celera3143,049,279 - 143,055,527 (-)NCBICelera
Cytogenetic Map3q42NCBI
EIF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,278,906 - 35,284,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,278,907 - 35,284,985 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,866,709 - 33,872,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,330,139 - 33,336,008 (-)NCBINCBI36Build 36hg18NCBI36
Build 342033,330,138 - 33,335,920NCBI
Celera2030,615,330 - 30,621,199 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,644,132 - 30,650,042 (-)NCBIHuRef
CHM1_12033,767,787 - 33,773,697 (-)NCBICHM1_1
T2T-CHM13v2.02036,999,768 - 37,005,633 (-)NCBIT2T-CHM13v2.0
Eif6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,661,757 - 155,668,845 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,661,752 - 155,668,845 (-)EnsemblGRCm39 Ensembl
GRCm382155,819,837 - 155,826,925 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,819,832 - 155,826,925 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,645,573 - 155,652,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,511,278 - 155,518,366 (-)NCBIMGSCv36mm8
Celera2161,752,364 - 161,759,336 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Eif6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495621021 - 9,816 (+)EnsemblChiLan1.0
ChiLan1.0NW_004956210226 - 6,819 (+)NCBIChiLan1.0ChiLan1.0
EIF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,013,352 - 41,019,306 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,006,444 - 41,012,410 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,608,264 - 31,614,225 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,731,097 - 32,737,136 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,731,097 - 32,737,136 (-)Ensemblpanpan1.1panPan2
EIF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,259,623 - 24,266,453 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,259,620 - 24,266,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,905,521 - 23,912,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,951,802 - 24,958,477 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,951,799 - 24,958,930 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,238,654 - 24,245,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,333,669 - 24,340,340 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,772,767 - 24,779,438 (-)NCBIUU_Cfam_GSD_1.0
Eif6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,271,873 - 173,278,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,471,102 - 5,477,813 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,471,113 - 5,477,679 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,638,298 - 38,643,973 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,638,295 - 38,643,918 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EIF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,185,419 - 56,190,993 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,184,679 - 56,191,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660872,336,092 - 2,341,826 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Eif6
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:110
Interacting mature miRNAs:128
Transcripts:ENSRNOT00000073492
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat

Markers in Region
RH130292  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,325,074 - 144,325,231 (+)MAPPERmRatBN7.2
Rnor_6.03151,356,904 - 151,357,060NCBIRnor6.0
Rnor_5.03157,722,115 - 157,722,271UniSTSRnor5.0
Celera3143,049,316 - 143,049,472UniSTS
RH 3.4 Map14577.69UniSTS
Cytogenetic Map3q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000073492   ⟹   ENSRNOP00000066257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,325,036 - 144,331,401 (-)Ensembl
Rnor_6.0 Ensembl3151,356,868 - 151,363,115 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078688   ⟹   ENSRNOP00000071658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,327,982 - 144,331,401 (-)Ensembl
Rnor_6.0 Ensembl3151,359,482 - 151,362,890 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116245   ⟹   ENSRNOP00000080957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,327,310 - 144,331,401 (-)Ensembl
RefSeq Acc Id: NM_001037352   ⟹   NP_001032429
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83164,785,162 - 164,791,410 (-)NCBI
mRatBN7.23144,325,038 - 144,331,286 (-)NCBI
Rnor_6.03151,356,867 - 151,363,115 (-)NCBI
Rnor_5.03157,722,078 - 157,728,394 (-)NCBI
Celera3143,049,279 - 143,055,527 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001032429 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05765 (Get FASTA)   NCBI Sequence Viewer  
  EDL85894 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000066257.1
  ENSRNOP00000071658.2
  ENSRNOP00000080957.1
  ENSRNOP00055034509
  ENSRNOP00060041089
  ENSRNOP00065040194
GenBank Protein Q3KRD8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001032429   ⟸   NM_001037352
- UniProtKB: Q3KRD8 (UniProtKB/Swiss-Prot),   A0A8I5ZQX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000066257   ⟸   ENSRNOT00000073492
RefSeq Acc Id: ENSRNOP00000071658   ⟸   ENSRNOT00000078688
RefSeq Acc Id: ENSRNOP00000080957   ⟸   ENSRNOT00000116245

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KRD8-F1-model_v2 AlphaFold Q3KRD8 1-245 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692589
Promoter ID:EPDNEW_R3114
Type:multiple initiation site
Name:Eif6_1
Description:eukaryotic translation initiation factor 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03151,363,140 - 151,363,200EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305373 AgrOrtholog
BioCyc Gene G2FUF-47116 BioCyc
Ensembl Genes ENSRNOG00000049497 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055024559 UniProtKB/Swiss-Prot
  ENSRNOG00060028303 UniProtKB/Swiss-Prot
  ENSRNOG00065028436 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000073492.3 UniProtKB/Swiss-Prot
  ENSRNOT00000078688.2 UniProtKB/TrEMBL
  ENSRNOT00000116245.1 UniProtKB/TrEMBL
  ENSRNOT00055042277 UniProtKB/Swiss-Prot
  ENSRNOT00060049230 UniProtKB/Swiss-Prot
  ENSRNOT00065049009 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7929717 IMAGE-MGC_LOAD
InterPro eIF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:305506 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124669 IMAGE-MGC_LOAD
NCBI Gene 305506 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam eIF-6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Eif6 PhenoGen
PIRSF IF-6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000049497 RatGTEx
  ENSRNOG00055024559 RatGTEx
  ENSRNOG00060028303 RatGTEx
  ENSRNOG00065028436 RatGTEx
SMART eIF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Pentein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K110_RAT UniProtKB/TrEMBL
  A0A8I5ZQX8 ENTREZGENE, UniProtKB/TrEMBL
  IF6_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Eif6  eukaryotic translation initiation factor 6  Itgb4bp  integrin beta 4 binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Itgb4bp  integrin beta 4 binding protein  Itgb4bp_predicted  integrin beta 4 binding protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Itgb4bp_predicted  integrin beta 4 binding protein (predicted)      Symbol and Name status set to approved 70820 APPROVED