Rplp0 (ribosomal protein lateral stalk subunit P0) - Rat Genome Database

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Gene: Rplp0 (ribosomal protein lateral stalk subunit P0) Rattus norvegicus
Analyze
Symbol: Rplp0
Name: ribosomal protein lateral stalk subunit P0
RGD ID: 621247
Description: Exhibits peptide binding activity. Involved in several processes, including cellular response to organonitrogen compound; cellular response to phorbol 13-acetate 12-myristate; and lactation. Localizes to membrane and synapse. Biomarker of Down syndrome. Orthologous to human RPLP0 (ribosomal protein lateral stalk subunit P0); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 60S acidic ribosomal protein P0; 60S ribosomal protein L10E; acidic ribosomal phosphoprotein P0; acidic ribosomal protein P0; Arbp; L10E; ribosomal protein, large, P0
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21241,054,363 - 41,057,632 (-)NCBI
Rnor_6.0 Ensembl1246,791,528 - 46,794,797 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01246,791,528 - 46,794,797 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01248,588,974 - 48,592,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,315,766 - 42,318,732 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,179,153 - 42,182,120 (-)NCBI
Celera1242,677,808 - 42,681,077 (-)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-acetamidofluorene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3'-diindolylmethane  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
alpha-hexachlorocyclohexane  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP,ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
bufalin  (ISO)
C60 fullerene  (EXP)
captan  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chromium trinitrate  (ISO)
chromium(6+)  (ISO)
clobetasol  (ISO)
clofibrate  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
flutamide  (EXP)
folic acid  (ISO)
folpet  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (ISO)
lovastatin  (ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosomorpholine  (EXP)
naphthalene  (ISO)
nickel atom  (ISO)
nickel subsulfide  (EXP)
nimesulide  (EXP)
nitric oxide  (ISO)
paracetamol  (EXP,ISO)
PhIP  (EXP)
potassium chromate  (ISO)
Propiverine  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
S-nitroso-N-acetyl-D-penicillamine  (EXP)
silicon dioxide  (ISO)
sodium dichromate  (ISO)
Soman  (EXP)
tanespimycin  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
warfarin  (ISO)
zileuton  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:3323886   PMID:9798653   PMID:12962325   PMID:15121898   PMID:15303970   PMID:15489334   PMID:16396499   PMID:17289661   PMID:19188445   PMID:19946888   PMID:20458337   PMID:21170055  
PMID:21257285   PMID:21423176   PMID:21700703   PMID:22022532   PMID:22658674   PMID:22681889   PMID:22720776   PMID:23071613   PMID:23106098   PMID:23376485   PMID:24625528   PMID:29476059  
PMID:30053369  


Genomics

Comparative Map Data
Rplp0
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21241,054,363 - 41,057,632 (-)NCBI
Rnor_6.0 Ensembl1246,791,528 - 46,794,797 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01246,791,528 - 46,794,797 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01248,588,974 - 48,592,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,315,766 - 42,318,732 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,179,153 - 42,182,120 (-)NCBI
Celera1242,677,808 - 42,681,077 (-)NCBICelera
Cytogenetic Map12q16NCBI
RPLP0
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12120,196,699 - 120,201,235 (-)EnsemblGRCh38hg38GRCh38
GRCh3812120,196,699 - 120,201,111 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712120,634,502 - 120,638,914 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,118,886 - 119,123,397 (-)NCBINCBI36hg18NCBI36
Build 3412119,097,222 - 119,101,734NCBI
Celera12120,267,618 - 120,272,129 (-)NCBI
Cytogenetic Map12q24.23NCBI
HuRef12117,643,050 - 117,647,561 (-)NCBIHuRef
CHM1_112120,602,510 - 120,607,021 (-)NCBICHM1_1
Rplp0
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,697,526 - 115,701,788 (+)NCBIGRCm39mm39
GRCm39 Ensembl5115,697,526 - 115,701,786 (+)Ensembl
GRCm385115,559,467 - 115,563,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,559,467 - 115,563,727 (+)EnsemblGRCm38mm10GRCm38
MGSCv375116,009,476 - 116,013,738 (+)NCBIGRCm37mm9NCBIm37
MGSCv365115,820,514 - 115,824,726 (+)NCBImm8
Celera5112,664,588 - 112,668,879 (+)NCBICelera
Cytogenetic Map5FNCBI
Rplp0
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545511,404,898 - 11,409,262 (+)NCBIChiLan1.0ChiLan1.0
RPLP0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112121,146,882 - 121,151,388 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12121,146,882 - 121,151,388 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012117,771,887 - 117,776,391 (-)NCBIMhudiblu_PPA_v0panPan3
RPLP0
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,148,463 - 16,154,048 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2616,148,460 - 16,153,614 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,153,039 - 16,158,180 (-)NCBI
ROS_Cfam_1.02616,416,181 - 16,421,685 (-)NCBI
UMICH_Zoey_3.12616,377,241 - 16,382,371 (-)NCBI
UNSW_CanFamBas_1.02616,454,118 - 16,459,286 (-)NCBI
UU_Cfam_GSD_1.02616,495,325 - 16,500,476 (-)NCBI
Rplp0
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,213,496 - 146,217,945 (+)NCBI
SpeTri2.0NW_004936668712,402 - 716,839 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPLP0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,219,124 - 40,223,967 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,219,196 - 40,223,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214120,957,731 - 120,959,417 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap14q22-24NCBI
RPLP0
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,547,430 - 115,552,242 (-)NCBI
ChlSab1.1 Ensembl11115,547,427 - 115,550,209 (-)Ensembl
Rplp0
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474713,439,791 - 13,444,574 (+)NCBI


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12247568747475687Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12251344247513442Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12251344247513442Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12421005149210051Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6922362652716770Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922363052716770Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12978983452716770Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121312721150320041Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121441977552716770Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121502198652716770Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121590890052716770Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121590890052716770Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121834247752716770Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121834247752716770Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121872904352716770Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121875259352716770Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101875259352716770Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122265070248598906Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)122265070252716770Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122490659052716770Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122609884552716770Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122911360949560679Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122911360950757185Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123172356547433663Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123172356551955754Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123172356552716770Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123752188451955754Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:49
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000001518
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 9 28 41 22 18 22 1 2 51 20 34 8 1
Medium 15 27 19 1 19 7 9 23 15 7 3 7
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP465362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN931898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z29530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000001518   ⟹   ENSRNOP00000001518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1246,791,528 - 46,794,797 (-)Ensembl
RefSeq Acc Id: NM_022402   ⟹   NP_071797
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21241,054,363 - 41,057,632 (-)NCBI
Rnor_6.01246,791,528 - 46,794,797 (-)NCBI
Rnor_5.01248,588,974 - 48,592,243 (-)NCBI
RGSC_v3.41242,315,766 - 42,318,732 (-)RGD
Celera1242,677,808 - 42,681,077 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_071797 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH62028 (Get FASTA)   NCBI Sequence Viewer  
  CAA82647 (Get FASTA)   NCBI Sequence Viewer  
  EDM13873 (Get FASTA)   NCBI Sequence Viewer  
  P19945 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_071797   ⟸   NM_022402
- UniProtKB: P19945 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000001518   ⟸   ENSRNOT00000001518

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698686
Promoter ID:EPDNEW_R9211
Type:single initiation site
Name:Rplp0_1
Description:ribosomal protein lateral stalk subunit P0
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01246,794,797 - 46,794,857EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
12 46793535 46793536 C T snv Buf/N (MCW)
12 46793573 46793574 A G snv Buf/N (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
12 42317770 42317771 C T snv BUF/N (KNAW)
12 42317808 42317809 A G snv BUF/N (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621247 AgrOrtholog
Ensembl Genes ENSRNOG00000001148 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000001518 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001518 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.1730 UniProtKB/Swiss-Prot
  3.90.105.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5623881 IMAGE-MGC_LOAD
InterPro L10E_eukaryotes UniProtKB/Swiss-Prot
  Ribosomal_L10-like_sf UniProtKB/Swiss-Prot
  Ribosomal_L10P UniProtKB/Swiss-Prot
  RL10_insert_sf UniProtKB/Swiss-Prot
  RL10P_insert UniProtKB/Swiss-Prot
KEGG Report rno:64205 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72448 IMAGE-MGC_LOAD
NCBI Gene 64205 ENTREZGENE
Pfam Ribosomal_L10 UniProtKB/Swiss-Prot
  RL10P_insert UniProtKB/Swiss-Prot
PhenoGen Rplp0 PhenoGen
PIRSF L10E UniProtKB/Swiss-Prot
Superfamily-SCOP SSF160369 UniProtKB/Swiss-Prot
UniProt P19945 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Rplp0  ribosomal protein lateral stalk subunit P0  Rplp0  ribosomal protein, large, P0  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Rplp0  ribosomal protein, large, P0  Arbp  acidic ribosomal phosphoprotein P0  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Arbp  acidic ribosomal phosphoprotein P0    acidic ribosomal protein P0  Name updated 1299863 APPROVED
2002-08-07 Arbp  acidic ribosomal protein P0      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein predicted protein is 34.18 kDa 631930