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ONTOLOGY REPORT - ANNOTATIONS

Term:spliceosomal snRNP assembly
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Accession:GO:0000387 term browser browse the term
Definition:The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
Synonyms:related_synonym: spliceosomal snRNP biogenesis


show annotations for term's descendants           Sort by:
spliceosomal snRNP assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A involved_in ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:18984161)
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033		 UniProt
RGD
InterPro
TreeGrafter
GO_Central		 PMID:18984161 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:152,019,369...152,039,670
Ensembl chr 1:152,019,378...152,039,661 		JBrowse link
G Coil coilin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:73,789,077...73,810,378
Ensembl chr10:73,789,488...73,810,393 		JBrowse link
G Ddx20 DEAD-box helicase 20 involved_in ISO
IBA		 (PMID:12067652), (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr 2:193,158,761...193,168,484
Ensembl chr 2:193,158,823...193,166,774 		JBrowse link
G ENSRNOG00000063060 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr 6:84,273,587...84,274,496 JBrowse link
G ENSRNOG00000063288 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr14:32,635,911...32,636,620 JBrowse link
G ENSRNOG00000063333 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:93,293,758...93,294,114 JBrowse link
G ENSRNOG00000063412 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr  X:133,163,165...133,163,784 JBrowse link
G ENSRNOG00000064062 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr19:33,454,456...33,455,388 JBrowse link
G ENSRNOG00000066758 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:14,995,412...14,996,454 JBrowse link
G ENSRNOG00000068015 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr  X:133,878,251...133,878,959 JBrowse link
G ENSRNOG00000068876 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr 9:112,301,511...112,302,585 JBrowse link
G Gemin2 gem (nuclear organelle) associated protein 2 involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:12067652), (PMID:18984161), (PMID:31799625)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:12067652 PMID:18984161 PMID:31799625 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:76,706,424...76,721,154
Ensembl chr 6:76,707,523...76,721,153 		JBrowse link
G Gemin4 gem (nuclear organelle) associated protein 4 involved_in ISO
IBA		 (PMID:12067652), (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr10:61,062,420...61,073,529
Ensembl chr10:61,066,425...61,073,431
Ensembl chr10:61,066,425...61,073,431 		JBrowse link
G Gemin5 gem (nuclear organelle) associated protein 5 involved_in ISO
IBA		 (PMID:12067652), (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr10:42,295,729...42,342,902
Ensembl chr10:42,297,515...42,342,892 		JBrowse link
G Gemin6 gem (nuclear organelle) associated protein 6 involved_in ISO
IBA		 (PMID:12067652), (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr 6:14,786,090...14,790,617
Ensembl chr 6:14,786,070...14,790,612 		JBrowse link
G Gemin7 gem (nuclear organelle) associated protein 7 involved_in ISO
IBA		 (PMID:12067652), (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000033 NCBI chr 1:79,215,054...79,228,769
Ensembl chr 1:79,214,919...79,224,994 		JBrowse link
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:78,269,910...78,270,681
Ensembl chr 4:78,269,888...78,270,669 		JBrowse link
G Gemin8 gem (nuclear organelle) associated protein 8 involved_in ISO
IBA		 (PMID:12067652), (PMID:16434402), (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:12067652 PMID:16434402 PMID:18984161 GO_REF:0000033 NCBI chr  X:28,259,806...28,278,641
Ensembl chr  X:28,259,793...28,278,663 		JBrowse link
G Glod4 glyoxalase domain containing 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:61,077,535...61,095,876
Ensembl chr10:61,066,421...61,095,898 		JBrowse link
G LOC108350623 small nuclear ribonucleoprotein F-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:155,116,497...155,116,945 JBrowse link
G LOC108352309 small nuclear ribonucleoprotein F-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:33,533,614...33,533,927
Ensembl chr11:33,533,512...33,533,871 		JBrowse link
G LOC120099250 U1 small nuclear ribonucleoprotein C-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:135,673,708...135,678,865 JBrowse link
G LOC120100604 small nuclear ribonucleoprotein G-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:186,400,521...186,402,953
Ensembl chr 2:186,400,857...186,401,087 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO (PMID:17709427) RGD PMID:17709427 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296 		JBrowse link
G Prmt7 protein arginine methyltransferase 7 involved_in ISO
ISS
IEA		 (PMID:17709427)
GO_REF:0000024
GO_REF:0000104		 RGD
UniProt		 PMID:17709427 GO_REF:0000024 GO_REF:0000104 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577 		JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in ISS
ISO		 GO_REF:0000024
(PMID:12077342)		 UniProt
RGD		 PMID:12077342 GO_REF:0000024 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in
NOT|involved_in		 ISO (PMID:14749385), (PMID:15314151)
(PMID:15314151)		 RGD PMID:14749385 PMID:15314151 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:12067652), (PMID:18984161)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:12067652 PMID:18984161 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 involved_in ISO
ISS		 (PMID:18984161)
GO_REF:0000024		 RGD
UniProt		 PMID:18984161 GO_REF:0000024 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in ISO
IEA		 (PMID:8972845)
GO_REF:0000104		 RGD
UniProt		 PMID:8972845 GO_REF:0000104 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide involved_in ISO
IBA		 (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:18984161 GO_REF:0000033 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide involved_in ISO
IBA		 (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:18984161 GO_REF:0000033 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide involved_in ISO
IBA		 (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:18984161 GO_REF:0000033 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpd3l1 small nuclear ribonucleoprotein D3 polypeptide like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr19:12,396,026...12,396,454
Ensembl chr19:12,396,026...12,396,454 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E involved_in ISO
IBA		 (PMID:18984161)
GO_REF:0000033		 RGD
GO_Central		 PMID:18984161 GO_REF:0000033 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F involved_in ISO (PMID:18984161) RGD PMID:18984161 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G involved_in ISO
IEA		 (PMID:18984161)
GO_REF:0000104		 RGD
UniProt		 PMID:18984161 GO_REF:0000104 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118 		JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:12067652), (PMID:18984161)
GO_REF:0000033
GO_REF:0000118		 UniProt
RGD
GO_Central
TreeGrafter		 PMID:12067652 PMID:18984161 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in ISO (MGI:5904379|PMID:28263986) RGD PMID:28263986 MGI:5904379 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO
ISS		 (PMID:35188580)
GO_REF:0000024		 RGD
UniProt		 PMID:35188580 GO_REF:0000024 NCBI chr 1:198,251,986...198,254,810
Ensembl chr 1:198,235,487...198,254,980 		JBrowse link
G Zfp341 zinc finger protein 341 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:143,122,699...143,156,250
Ensembl chr 3:143,119,093...143,156,249 		JBrowse link
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:145,057,368...145,079,838
Ensembl chr 3:145,057,458...145,080,166 		JBrowse link
G Linc00176 long intergenic non-protein coding RNA 176 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:168,771,350...168,775,133
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:10523320) RGD PMID:10523320 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20595234)		 UniProt
Ensembl
RGD		 PMID:20595234 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 involved_in ISO (PMID:20595234) RGD PMID:20595234 NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 acts_upstream_of_or_within
involved_in		 ISO (PMID:11867543)
(PMID:15257298), (PMID:20118938)		 RGD PMID:11867543 PMID:15257298 PMID:20118938 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873 		JBrowse link
G Prpf4b pre-mRNA processing factor 4B involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:20118938)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:20118938 GO_REF:0000024 GO_REF:0000107 NCBI chr17:29,985,343...30,020,285
Ensembl chr17:29,985,343...30,019,625 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 involved_in IEA
ISO
ISS
IBA		 GO_REF:0000107
(PMID:15257298), (PMID:20118938)
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033		 Ensembl
RGD
UniProt
TreeGrafter
GO_Central		 PMID:15257298 PMID:20118938 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 involved_in ISO
IBA		 (PMID:20595234)
GO_REF:0000033		 RGD
GO_Central		 PMID:20595234 GO_REF:0000033 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:12032085), (PMID:20595234) RGD PMID:12032085 PMID:20595234 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Tssc4 tumor suppressing subtransferable candidate 4 involved_in ISO
IEA
ISS		 (PMID:34131137)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:34131137 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:198,251,986...198,254,810
Ensembl chr 1:198,235,487...198,254,980 		JBrowse link
G Usp4 ubiquitin specific peptidase 4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20595234)		 UniProt
RGD		 PMID:20595234 GO_REF:0000024 NCBI chr 8:109,035,402...109,079,382
Ensembl chr 8:109,036,099...109,080,427 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cellular component organization or biogenesis 7217
        cellular component biogenesis 3571
          ribonucleoprotein complex biogenesis 593
            protein-RNA complex assembly 225
              spliceosomal snRNP assembly 54
                spliceosomal tri-snRNP complex assembly 12
Path 2
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cellular metabolic process 10279
        cellular aromatic compound metabolic process 5937
          nucleobase-containing compound metabolic process 5696
            nucleic acid metabolic process 5103
              RNA metabolic process 4506
                RNA processing 1017
                  RNA splicing 467
                    RNA splicing, via transesterification reactions 351
                      RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 351
                        mRNA splicing, via spliceosome 351
                          spliceosomal snRNP assembly 54
                            spliceosomal tri-snRNP complex assembly 12
paths to the root