Eif3m (eukaryotic translation initiation factor 3, subunit M) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Eif3m (eukaryotic translation initiation factor 3, subunit M) Rattus norvegicus
Analyze
Symbol: Eif3m
Name: eukaryotic translation initiation factor 3, subunit M
RGD ID: 1565840
Description: Predicted to enable translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translation. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Orthologous to human EIF3M (eukaryotic translation initiation factor 3 subunit M); PARTICIPATES IN translation initiation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: eukaryotic translation initiation factor 3 subunit M; LOC295975; RGD1565840; similar to Dendritic cell protein GA17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2391,424,754 - 91,442,358 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl391,416,325 - 91,442,392 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx394,916,720 - 94,934,260 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03103,515,667 - 103,533,207 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03101,347,071 - 101,364,663 (-)NCBIRnor_WKY
Rnor_6.0394,990,086 - 95,007,690 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,990,068 - 95,007,712 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03101,614,557 - 101,632,161 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4390,384,185 - 90,401,789 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera390,483,293 - 90,500,897 (-)NCBICelera
Cytogenetic Map3q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The scanning mechanism of eukaryotic translation initiation. Hinnebusch AG Annu Rev Biochem. 2014;83:779-812. doi: 10.1146/annurev-biochem-060713-035802. Epub 2014 Jan 29.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:17322308   PMID:18599441   PMID:24003236   PMID:25849773  


Genomics

Comparative Map Data
Eif3m
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2391,424,754 - 91,442,358 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl391,416,325 - 91,442,392 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx394,916,720 - 94,934,260 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03103,515,667 - 103,533,207 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03101,347,071 - 101,364,663 (-)NCBIRnor_WKY
Rnor_6.0394,990,086 - 95,007,690 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl394,990,068 - 95,007,712 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03101,614,557 - 101,632,161 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4390,384,185 - 90,401,789 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera390,483,293 - 90,500,897 (-)NCBICelera
Cytogenetic Map3q33NCBI
EIF3M
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381132,583,831 - 32,606,264 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1132,583,798 - 32,606,264 (+)EnsemblGRCh38hg38GRCh38
GRCh371132,605,377 - 32,627,810 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361132,561,967 - 32,580,595 (+)NCBINCBI36Build 36hg18NCBI36
Celera1132,752,144 - 32,770,766 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1132,299,982 - 32,318,710 (+)NCBIHuRef
CHM1_11132,605,368 - 32,624,094 (+)NCBICHM1_1
T2T-CHM13v2.01132,719,345 - 32,741,774 (+)NCBIT2T-CHM13v2.0
Eif3m
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392104,830,001 - 104,847,372 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2104,830,001 - 104,847,425 (-)EnsemblGRCm39 Ensembl
GRCm382104,999,656 - 105,017,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,999,656 - 105,017,080 (-)EnsemblGRCm38mm10GRCm38
MGSCv372104,839,813 - 104,857,184 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362104,800,495 - 104,817,866 (-)NCBIMGSCv36mm8
Celera2106,232,844 - 106,250,618 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map255.06NCBI
Eif3m
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547610,594,670 - 10,614,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547610,594,670 - 10,612,448 (+)NCBIChiLan1.0ChiLan1.0
EIF3M
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11132,433,324 - 32,451,829 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,433,324 - 32,451,829 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01132,545,655 - 32,568,153 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
EIF3M
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11834,944,181 - 35,036,686 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1834,944,181 - 35,033,541 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1834,558,412 - 34,583,117 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01835,555,348 - 35,580,077 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1835,550,252 - 35,579,999 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11835,126,209 - 35,150,910 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01834,706,619 - 34,731,340 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01835,342,246 - 35,366,933 (-)NCBIUU_Cfam_GSD_1.0
Eif3m
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494732,136,240 - 32,152,880 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365335,256,284 - 5,277,728 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365335,261,050 - 5,277,675 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF3M
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl228,256,591 - 28,282,770 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1228,258,399 - 28,282,812 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2230,748,559 - 30,772,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EIF3M
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1132,595,317 - 32,614,648 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl132,595,397 - 32,614,615 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038129,757,017 - 129,776,297 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif3m
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476621,041,167 - 21,060,039 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476621,041,235 - 21,057,430 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eif3m
41 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:71
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000017409
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat

Markers in Region
RH130778  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2391,442,519 - 91,443,078 (+)MAPPERmRatBN7.2
Rnor_6.0395,007,852 - 95,008,410NCBIRnor6.0
Rnor_5.03101,632,323 - 101,632,881UniSTSRnor5.0
RGSC_v3.4390,401,951 - 90,402,509UniSTSRGSC3.4
Celera390,501,059 - 90,501,617UniSTS
RH 3.4 Map3731.8UniSTS
Cytogenetic Map3q32UniSTS
RH133221  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2391,450,508 - 91,450,708 (+)MAPPERmRatBN7.2
Rnor_6.0395,015,332 - 95,015,531NCBIRnor6.0
Rnor_5.03101,639,803 - 101,640,002UniSTSRnor5.0
RGSC_v3.4390,409,703 - 90,409,902UniSTSRGSC3.4
Celera390,506,855 - 90,507,054UniSTS
RH 3.4 Map3732.6UniSTS
Cytogenetic Map3q32UniSTS
AU040300  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2391,424,922 - 91,426,433 (+)MAPPERmRatBN7.2
Rnor_6.0394,990,255 - 94,991,765NCBIRnor6.0
Rnor_5.03101,614,726 - 101,616,236UniSTSRnor5.0
RGSC_v3.4390,384,354 - 90,385,864UniSTSRGSC3.4
Celera390,483,462 - 90,484,972UniSTS
Cytogenetic Map3q32UniSTS
RH125509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2391,438,864 - 91,438,976 (+)MAPPERmRatBN7.2
Rnor_6.0395,004,197 - 95,004,308NCBIRnor6.0
Rnor_5.03101,628,668 - 101,628,779UniSTSRnor5.0
RGSC_v3.4390,398,296 - 90,398,407UniSTSRGSC3.4
Celera390,497,404 - 90,497,515UniSTS
Cytogenetic Map3q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017409   ⟹   ENSRNOP00000017409
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl391,424,754 - 91,440,165 (-)Ensembl
Rnor_6.0 Ensembl394,990,068 - 95,007,712 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094897   ⟹   ENSRNOP00000079525
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl391,424,758 - 91,442,334 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094935   ⟹   ENSRNOP00000091890
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl391,416,707 - 91,442,392 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097843   ⟹   ENSRNOP00000076501
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl391,416,325 - 91,442,354 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117477   ⟹   ENSRNOP00000087805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl391,424,754 - 91,442,334 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117946   ⟹   ENSRNOP00000087743
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl391,424,754 - 91,442,294 (-)Ensembl
RefSeq Acc Id: NM_001168523   ⟹   NP_001161995
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2391,424,754 - 91,442,358 (-)NCBI
Rnor_6.0394,990,086 - 95,007,690 (-)NCBI
Rnor_5.03101,614,557 - 101,632,161 (-)NCBI
RGSC_v3.4390,384,185 - 90,401,789 (-)RGD
Celera390,483,293 - 90,500,897 (-)RGD
Sequence:
RefSeq Acc Id: XM_039104532   ⟹   XP_038960460
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2391,424,754 - 91,442,023 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001161995 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960460 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79708 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001161995   ⟸   NM_001168523
- UniProtKB: D3ZAZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017409   ⟸   ENSRNOT00000017409
RefSeq Acc Id: XP_038960460   ⟸   XM_039104532
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000087743   ⟸   ENSRNOT00000117946
RefSeq Acc Id: ENSRNOP00000091890   ⟸   ENSRNOT00000094935
RefSeq Acc Id: ENSRNOP00000087805   ⟸   ENSRNOT00000117477
RefSeq Acc Id: ENSRNOP00000076501   ⟸   ENSRNOT00000097843
RefSeq Acc Id: ENSRNOP00000079525   ⟸   ENSRNOT00000094897
Protein Domains
PCI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAZ0-F1-model_v2 AlphaFold D3ZAZ0 1-374 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692267
Promoter ID:EPDNEW_R2792
Type:initiation region
Name:Eif3m_1
Description:eukaryotic translation initiation factor 3, subunit M
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0395,007,682 - 95,007,742EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565840 AgrOrtholog
BioCyc Gene G2FUF-48526 BioCyc
Ensembl Genes ENSRNOG00000012738 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017409 ENTREZGENE
  ENSRNOP00000017409.6 UniProtKB/TrEMBL
  ENSRNOP00000076501.1 UniProtKB/TrEMBL
  ENSRNOP00000079525 ENTREZGENE
  ENSRNOP00000079525.1 UniProtKB/TrEMBL
  ENSRNOP00000087743.1 UniProtKB/TrEMBL
  ENSRNOP00000087805.1 UniProtKB/TrEMBL
  ENSRNOP00000091890.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017409 ENTREZGENE
  ENSRNOT00000017409.8 UniProtKB/TrEMBL
  ENSRNOT00000094897 ENTREZGENE
  ENSRNOT00000094897.1 UniProtKB/TrEMBL
  ENSRNOT00000094935.1 UniProtKB/TrEMBL
  ENSRNOT00000097843.1 UniProtKB/TrEMBL
  ENSRNOT00000117477.1 UniProtKB/TrEMBL
  ENSRNOT00000117946.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  COPS7/eIF3m UniProtKB/TrEMBL
  eIF3m UniProtKB/TrEMBL
  eIF3m_C_helix UniProtKB/TrEMBL
  PCI_dom UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:295975 UniProtKB/TrEMBL
NCBI Gene 295975 ENTREZGENE
PANTHER PTHR15350 UniProtKB/TrEMBL
Pfam eIF3m_C_helix UniProtKB/TrEMBL
  PCI UniProtKB/TrEMBL
PhenoGen Eif3m PhenoGen
PROSITE PCI UniProtKB/TrEMBL
SMART PINT UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
UniProt A0A8I5XV17_RAT UniProtKB/TrEMBL
  A0A8I5ZR56_RAT UniProtKB/TrEMBL
  A0A8I6A4Q7_RAT UniProtKB/TrEMBL
  A0A8I6AH02_RAT UniProtKB/TrEMBL
  A0A8I6GFH6_RAT UniProtKB/TrEMBL
  D3ZAZ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Eif3m  eukaryotic translation initiation factor 3, subunit M  RGD1565840  similar to Dendritic cell protein GA17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565840  similar to Dendritic cell protein GA17   RGD1565840_predicted  similar to Dendritic cell protein GA17 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565840_predicted  similar to Dendritic cell protein GA17 (predicted)  LOC295975  similar to Dendritic cell protein GA17  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC295975  similar to Dendritic cell protein GA17      Symbol and Name status set to provisional 70820 PROVISIONAL