Srpk2 (SRSF protein kinase 2) - Rat Genome Database

Name: Srpk2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Srpk2 (SRSF protein kinase 2) Rattus norvegicus

Analyze

Symbol:

Srpk2

Name:

SRSF protein kinase 2

RGD ID:

1305107

Description:

Predicted to enable several functions, including 14-3-3 protein binding activity; ATP binding activity; and magnesium ion binding activity. Predicted to be involved in several processes, including R-loop processing; nuclear speck organization; and regulation of viral genome replication. Predicted to be located in cytosol; nuclear speck; and nucleolus. Predicted to be part of chromatin. Orthologous to human SRPK2 (SRSF protein kinase 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC296753; serine/arginine-rich protein specific kinase 2; serine/threonine-protein kinase SRPK2; SFRS protein kinase 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SRPK2 (SRSF protein kinase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Srpk2 (serine/arginine-rich protein specific kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Srpk2 (SRSF protein kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SRPK2 (SRSF protein kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SRPK2 (SRSF protein kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Srpk2 (SRSF protein kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SRPK2 (SRSF protein kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SRPK2 (SRSF protein kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Srpk2 (SRSF protein kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MMP2 (matrix metallopeptidase 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SRPK2 (SRSF protein kinase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Srpk2 (serine/arginine-rich protein specific kinase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG8565	Alliance	DIOPT (Ensembl Compara\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	SKY1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	spk-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Srpk79D	Alliance	DIOPT (OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	srpk3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	11,464,684 - 11,655,993 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	11,464,674 - 11,655,990 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	16,687,771 - 16,806,340 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	12,510,835 - 12,629,425 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	10,859,761 - 10,978,332 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	7,994,025 - 8,187,455 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	8,066,737 - 8,185,935 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	8,001,928 - 8,193,168 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	6,918,521 - 7,039,871 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	6,918,542 - 7,039,871 (+)	NCBI
Celera	4	7,148,433 - 7,267,472 (+)	NCBI		Celera
Cytogenetic Map	4	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

bipolar disorder (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

butyric acid (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chloroprene (EXP)

chlorpyrifos (EXP,ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

fulvestrant (ISO)

gentamycin (EXP)

ivermectin (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methotrexate (ISO)

methoxychlor (EXP)

miconazole (ISO)

N-methylformamide (ISO)

N-nitrosodiethylamine (ISO)

ochratoxin A (EXP)

paracetamol (ISO)

paraquat (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

propiconazole (ISO)

raloxifene (EXP)

sodium arsenite (ISO)

succimer (ISO)

tert-butyl hydroperoxide (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

toluene (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

intracellular signal transduction (IBA,ISO)

negative regulation of viral genome replication (ISO)

nuclear speck organization (ISO)

positive regulation of cell cycle (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of gene expression (ISO)

positive regulation of neuron apoptotic process (ISO)

positive regulation of viral genome replication (ISO)

R-loop processing (ISO)

regulation of mRNA processing (IBA)

RNA splicing (ISO)

spliceosomal complex assembly (IBA,ISO)

Cellular Component

chromatin (ISO)

cytoplasm (IBA,ISO)

cytosol (IEA,ISO)

nuclear speck (ISO)

nucleolus (IEA,ISO)

nucleoplasm (ISO)

nucleus (IBA,ISO)

Molecular Function

14-3-3 protein binding (ISO)

ATP binding (ISO)

magnesium ion binding (ISO)

protein binding (ISO)

protein serine/threonine kinase activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9446799	PMID:9472028	PMID:12417631	PMID:12477932	PMID:18559500	PMID:19592491	PMID:19906640	PMID:20498328	PMID:22658674	PMID:22681889	PMID:26167880	PMID:28076779

Genomics

Comparative Map Data

Srpk2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	11,464,684 - 11,655,993 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	11,464,674 - 11,655,990 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	16,687,771 - 16,806,340 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	12,510,835 - 12,629,425 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	10,859,761 - 10,978,332 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	7,994,025 - 8,187,455 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	8,066,737 - 8,185,935 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	8,001,928 - 8,193,168 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	6,918,521 - 7,039,871 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	6,918,542 - 7,039,871 (+)	NCBI
Celera	4	7,148,433 - 7,267,472 (+)	NCBI		Celera
Cytogenetic Map	4	q11	NCBI

SRPK2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	105,114,740 - 105,399,357 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	105,110,704 - 105,399,308 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	104,756,821 - 105,029,838 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	104,544,059 - 104,816,577 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	104,350,774 - 104,623,292	NCBI
Celera	7	99,562,462 - 99,834,859 (-)	NCBI		Celera
Cytogenetic Map	7	q22.3	NCBI
HuRef	7	99,117,123 - 99,299,796 (-)	NCBI		HuRef
CHM1_1	7	104,690,144 - 104,962,686 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	106,428,390 - 106,713,586 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	104,117,494 - 104,389,934 (-)	NCBI

Srpk2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	23,708,262 - 23,889,639 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	23,708,262 - 23,889,615 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	23,503,356 - 23,684,642 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	23,503,264 - 23,684,617 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	23,009,174 - 23,122,389 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	23,015,180 - 23,128,395 (-)	NCBI		MGSCv36	mm8
Celera	5	20,441,421 - 20,555,098 (-)	NCBI		Celera
Cytogenetic Map	5	A3	NCBI
cM Map	5	10.36	NCBI

Srpk2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	9,811,584 - 9,942,323 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	9,807,936 - 10,034,760 (-)	NCBI	ChiLan1.0	ChiLan1.0

SRPK2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	7	190,232,854 - 190,519,404 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	97,102,226 - 97,378,773 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	109,834,478 - 110,119,558 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	109,834,478 - 109,989,050 (-)	Ensembl	panpan1.1		panPan2

SRPK2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	14,991,187 - 15,243,124 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	14,999,422 - 15,236,393 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	14,642,234 - 14,889,552 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	15,295,582 - 15,546,667 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	15,302,732 - 15,541,047 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	15,079,634 - 15,328,371 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	15,002,645 - 15,251,931 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	15,282,883 - 15,531,664 (+)	NCBI		UU_Cfam_GSD_1.0

Srpk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	57,405,767 - 57,550,172 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	18,541,248 - 18,670,914 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	18,541,167 - 18,675,039 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRPK2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	105,006,987 - 105,264,731 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	105,009,550 - 105,264,689 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	115,729,526 - 115,831,344 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRPK2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	74,032,668 - 74,312,887 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	74,034,136 - 74,201,243 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	29,604,750 - 29,946,732 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Srpk2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624739	24,127,562 - 24,369,217 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Srpk2
780 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	159
Count of miRNA genes:	105
Interacting mature miRNAs:	135
Transcripts:	ENSRNOT00000063994
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61351	Bp33	Blood pressure QTL 33		0.0018	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	1	27716890	Rat
61408	Scl23	Serum cholesterol level QTL 23		0.0005	blood HDL phospholipid amount (VT:0010504)	serum high density lipoprotein phospholipid level (CMO:0001567)	4	1	27716890	Rat
724557	Plsm1	Polydactyly-luxate syndrome (PLS) morphotypes QTL 1		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	4	1	27716890	Rat
1641905	Colcr1	Colorectal carcinoma resistance QTL 1	4.3	0.0003	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	4	1	29494328	Rat
61333	Gluco16	Glucose level QTL 16	4.3	0.00001	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	1	30372989	Rat
9589097	Slep11	Serum leptin concentration QTL 11	5.09	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	4	1	31934116	Rat
8552903	Pigfal2	Plasma insulin-like growth factor 1 level QTL 2	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	1	31934116	Rat
9589046	Scfw2	Subcutaneous fat weight QTL 2	5.54	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	4	1	31934116	Rat
9590100	Sffal4	Serum free fatty acids level QTL 4	7.36	0.05	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	4	1	31934116	Rat
738021	Hcar13	Hepatocarcinoma resistance QTL 13	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	4	1	32584199	Rat
1357341	Gluco5	Glucose level QTL 5	6.4		adipocyte free fatty acid secretion trait (VT:0010465)	absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)	4	1	33250345	Rat
1357343	Gluco4	Glucose level QTL 4		0.00002	adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	4	1	33250345	Rat
61415	Eae11	Experimental allergic encephalomyelitis QTL 11	2.9		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	1	39505420	Rat
634323	Hc2	Hypercalciuria QTL 2	2.15		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	4	210796	45210796	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5214602	78882945	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	57114705	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	65958103	Rat
1358201	Gluco12	Glucose level QTL12	1.6		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake (CMO:0000870)	4	5218392	29593287	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5219178	56647776	Rat
631209	Bw2	Body weight QTL2	4.2		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	9940885	44463908	Rat
1300141	Bp178	Blood pressure QTL 178			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	10024901	39524530	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	10084089	55084089	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	10084089	55084089	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	10084089	55084089	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	10084089	55084089	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	10084089	55084089	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	10084089	55084089	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat

Markers in Region

RH130578

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	11,655,707 - 11,655,889 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	8,185,648 - 8,185,829	NCBI	Rnor6.0
Rnor_5.0	4	8,191,361 - 8,191,542	UniSTS	Rnor5.0
RGSC_v3.4	4	7,039,586 - 7,039,767	UniSTS	RGSC3.4
Celera	4	7,267,187 - 7,267,368	UniSTS
RH 3.4 Map	4	23.1	UniSTS
Cytogenetic Map	4	q11	UniSTS

RH129727

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	11,654,861 - 11,655,049 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	8,184,802 - 8,184,989	NCBI	Rnor6.0
Rnor_5.0	4	8,190,515 - 8,190,702	UniSTS	Rnor5.0
RGSC_v3.4	4	7,038,740 - 7,038,927	UniSTS	RGSC3.4
Celera	4	7,266,341 - 7,266,528	UniSTS
RH 3.4 Map	4	14.0	UniSTS
Cytogenetic Map	4	q11	UniSTS

BF395851

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	11,570,610 - 11,570,841 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	8,099,781 - 8,100,011	NCBI	Rnor6.0
Rnor_5.0	4	8,106,574 - 8,106,804	UniSTS	Rnor5.0
RGSC_v3.4	4	6,951,744 - 6,951,974	UniSTS	RGSC3.4
Celera	4	7,182,592 - 7,182,822	UniSTS
RH 3.4 Map	4	0.0	UniSTS
Cytogenetic Map	4	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	37	36	20	19	20	3	5	74	35	41	11	3
Low		6	21	21		21	5	6					5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF102149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000063994 ⟹ ENSRNOP00000059855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	11,537,385 - 11,655,990 (+)	Ensembl
Rnor_6.0 Ensembl	4	8,066,737 - 8,185,935 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076429 ⟹ ENSRNOP00000068064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	8,166,082 - 8,184,587 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080811 ⟹ ENSRNOP00000070149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	11,591,166 - 11,655,977 (+)	Ensembl
Rnor_6.0 Ensembl	4	8,066,907 - 8,184,681 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106508 ⟹ ENSRNOP00000096635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	11,464,674 - 11,655,990 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108014 ⟹ ENSRNOP00000080095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	11,475,893 - 11,655,988 (+)	Ensembl

RefSeq Acc Id:

NM_001106575 ⟹ NP_001100045

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,537,385 - 11,655,993 (+)	NCBI
Rnor_6.0	4	8,066,737 - 8,185,933 (+)	NCBI
Rnor_5.0	4	8,001,928 - 8,193,168 (+)	NCBI
RGSC_v3.4	4	6,918,521 - 7,039,871 (+)	RGD
Celera	4	7,148,433 - 7,267,472 (+)	RGD

Sequence:

show sequence

GGAGCGCCGTCCCTTTACAGCACCATTGAATCCCAGCCCGAACAGAAGTACTGTGAATCCTGTG
GCCTCATTCTGAACAAAAGGGATTAGGGAAGAAAAATCTCTTGATATAAGGCTTGTAAGCAAGG
GCGGGCAATCTTGGTTGTGAATATTTTCTGATTTTTCCAGAAATCAAGCAGAAGATTGAGCTGC
TGATGTCAGTTAACTCTGAGAAGTCGTCCTCTTCAGAAAGGCCGGAGCCTCAACAGAAAGCTCC
TTTAGTTCCTCCTCCTCCACCACCGCCACCGCCACCACCACTGCCAGACCCCGTGCCTCCAGAG
CCAGAGGAGGAGATTCTGGGGTCAGATGATGAGGAGCAGGAGGACCCCGCGGATTACTGCAAAG
GTGGCTATCATCCAGTGAAAATCGGAGACCTCTTCAATGGTCGCTATCATGTCATTAGGAAGCT
AGGATGGGGGCACTTTTCCACCGTCTGGCTATGCTGGGATATGCAAGGGAAGAGGTTTGTCGCC
ATGAAAGTTGTAAAAAGTGCACAGCATTATACAGAGACAGCCTTGGATGAAATTAAATTGCTCA
AATGTGTTCGAGAAAGTGACCCCAGTGACCCAAACAAAGACATGGTAGTCCAGCTAATCGATGA
CTTCAAGATCTCAGGCATGAATGGGATACATGTCTGCATGGTCTTCGAAGTACTTGGTCACCAT
CTCCTCAAATGGATCATCAAGTCCAACTATCAAGGCCTCCCAGTCCGCTGTGTGAAGAGTATCA
TTCGACAGGTCCTTCAGGGCTTAGACTATCTACACAGCAAGTGCAAGATAATCCACACTGATAT
CAAGCCGGAGAACATCCTGATGTGTGTGGACGGCGCGTACGTGCGGAGAATGGCGGCCGAGGCT
ACGGAGTGGCAGAAAGCAGGTGCTCCTCCTCCTTCTGGGTCTGCAGTGAGTACGGCTCCACAGC
AGAAACCTATAGGAAAAATATCTAAAAACAAAAAGAAAAAGCTAAAAAAGAAACAGAAGAGGCA
GGCTGAGTTGCTGGAGAAGCGCCTGCAGGAGATTGAGGAATTGGAGAGAGAAGCCGAAAGGAAA
ATCCTAGAAGAGAACACCACCTCTGCAGAAGCTTCCAGTGAGCAAGATGGAGAATGCCAGCCTG
AGGTGAAACTGAAAGAGGCCGAGTTAGAGGACACAACTGAGGAAGAGACAGCAAAGGACAATGG
TGAAGTTGAAGACCAGGAAGAGAAAGAAGACACAGAGAAGGAAAACACTGAGAAGGATGAAGAT
GATGTTGAACAGGAACTTGAGAACATAGACCCTACGTGGATGGAGTCCCCTAAGGCCAACGGCC
ATATTGAAAATGGCCTGTTTTTACTGGAGCAGCAGCTGGAGGATGAAGAGGATGAGGAAGATGA
CTGTGCAAACCCCGAGGAGTATAACCTGGATGAACCAAATGCGGAGAGTGATTATACGTATAGC
AGCTCCTATGAACAATTCAATGGTGAATTGCCAAACGGACAGCCTAAGAGTCCAGAGTTTCCCA
CACCGCTGTTTTCTGGGCCCTTAGAACCTGTGGCCTCTGACTCTGTGCTGTCAGAGGGATCACC
ACTCACCGAGCCAGAGGAAAGCAGTCCATCCCGTGACAGAAGCAGGACAGTTTCAGCCTCCAGT
ACTGGAGACTTGCCAAAAACAAAAACCCGGGCAGCTGACCTGTTGGTGAACCCTCTGGATCCAC
AGAATGCAGATAAAATTAGAGTAAAAATTGCTGACCTGGGAAATGCTTGTTGGGTGCATAAACA
TTTCACAGAGGATATCCAAACACGTCAGTATAGGTCCATAGAGGTTTTGATAGGAGCAGGCTAC
AGTACACCTGCAGACATTTGGAGTACAGCATGCATGGCATTTGAGCTGGCAACAGGAGACTATT
TGTTCGAACCGCATTCTGGGGAAGACTATTCCAGAGATGAAGACCACATAGCCCACATCATAGA
GCTGCTAGGCAGTATCCCAAGGCACTTTGCTCTGTCTGGAAAATACTCCCGGGAGTTCTTCAAC
CGCAGAGGAGAACTGCGGCACATCACCAAGCTGAAGCCCTGGAGCCTCTTTGATGTTCTTGTGG
AAAAGTATGGCTGGCCCCATGAAGATGCTGCACAGTTTACAGATTTCCTGATCCCAATGTTAGA
GATGGTTCCAGAAAAACGAGCCTCAGCTGGCGAATGCCTTCGGCATCCTTGGTTGAATTCTTAG
CAGATTCTACAAATATAGCATTCTGAGCTAGCAAATTTTTCCCAGTACATTGGACCTAAACAGT
GGCTCTCATTCTTTAACAGGATTACAAGTGAGCGGGCTCCACCCAGACCTTTGTTTTGCTTTGA
GGTACTGTTGTTTGACACTTCGCTTCCTGTGCACCACGGTCCTGGGGAAGGGTGGTCTTTGTCT
TCAGCTAAGTAGTTTACTCGCCATTTTCTTCTGGAAACAATAACATGTCTCTAAGCATTGTTTC
TTGTGTTGTGTGACATTCAAATGTCATTTTTTTTTTGAACGAAAAATACTTTCCCCTTTGTGTT
TTGGCAGGTTCGTTAACTATTTATGAAGACACATTTTAGCTGAGTATTCTATAATTTACACTCT
TAAGAAATTATCAGTTGGAACCAAGAAAGAGCAAGGGAATGTACAATGTTCTCTTCTGGCGAGG
GGAAGTCAGTCCCCCTGTATTATATGTATGTAACCATTCATCTGCACAGATAGGGCGAGGAGTC
CCGCGCGGAAAGCCGCCCGCCCTGAGCTTCTTAGCCTCCACTGCATGTTTCGGGTTTCCCACTG
CTTCAAGAAGTTGCACAAACTTTTCATCCCGTAGCAGTCCGAGTGGCTCTGGATTAGGTGCCAT
GCCCTCTGTGGCCCAGCAAGAGAGAAAAACATTAAAATTGACACTATAATCTAGCAGTTCCATT
TGTATTTTGCATATTTTTAAAACTATGTTTAAAAACATGTGATGGCCCAGTACCATCTAGTGTT
GCCTCTTCCCAGCACTGTAAGTTAAATGCGTTGTTTAAATTGGACAAGAGAAATATGTTCAGTG
TGTGGAATGAAAAAAATAATATATTTTCGGAAAAGCATGATCAGTGTTTGTTTAAAACACAAGG
TGTGTTTCTACAGTTTGCAGCGCAGTGGACAGAACACGCCTCACAGCTTACAGGTAGCCGTGAT
CATGTTCATTCCACCGGCAGCTTTACTTGCTACTGCGGCTCCCCTTGCCTTTTCATTACCGCCC
ATGAATGAGAAGGTCATTTCCCCTTTGCAGAGCGCATACAGTTTTAGTTTATGCATTTCCTTAA
AATTAACTGTAGAATCCAGGACGCAGACATTAGTAGGCAATACTATTTTAGAGTGTCTCATAGG
AGGTGTATTTAACCTCTTTTAGAAGTCAGTGGATTGAATGTCTTTTTTAAAAAATTTTTATTCA
TTAAGGTGCCTCGTTTTTTCTTGACTTTGTCCATTAACATTTATCCATTTGCCTTTGCAATAAT
TAGATTGTGAAAAGCTAACAAGTGTTGTAACAATAATCCTTTGTTTGGGGTGCTTGCACTTGTC
TTAAAAATTAAAGTGTTTTGGGGTGTTTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235903 ⟹ XP_006235965

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,538,163 - 11,654,614 (+)	NCBI
Rnor_6.0	4	8,064,325 - 8,187,455 (+)	NCBI
Rnor_5.0	4	8,001,928 - 8,193,168 (+)	NCBI

Sequence:

show sequence

AAAAAAGAAATACAAATGGAGACTGATGGAGGAATAGGTTTCTGCAGGGTTGGTTGTACGGCTG
CTGTTTGTGGGAACCAGGGAGCCAAGTGGTGGGGTGGAGTGGGGCATAGTGTGGTAACGGTGAC
GGTAAAAGCAGATTGGATTTTTTCAACCATTTTATAGATGAAATTAAAGTTTAGAAAGGCATGA
GGAGCACTGTTGCGAAGCAGGACAGGAAAGCTGGTAAAAATTAACTAACAAATGACAGTTGGGT
GAGGAGGCCTTCTCTGTCATTCAGAAGACTGAGTGAAAGGAACCACCTAACTGTACAAAAGATA
TAACGTTTCTGACGCTCCTCCTGTTTGAACATCCTTACTTCACCCCCTCTCCCCTCAACAGGGT
TTTCTATATAACAGGCCTAGAAACTTGCCCTGTAGACCAGGCTGCCCTTGAACCCACTGAGATC
TGCCTGCCTCTGCTTCCCAAGTTAAAGGCAGCCATCACGGTGCCGAGCTGTTTCGGGGATTTTT
AAAAGGTAACCAGGCCTAGCAATGGTAATGTTATAGAAGGGAAGGCATGTAGGCCTCCCAAGGA
GTGACACTGACAGTGGGTATAAAATTCTTCCGGAATCGCTCACTGTTTCCGGAACTAAACAAAC
GTGATGGTTTGGAGAGAACATGGACATCCTTCCTGCATCACTGCGACAGGCTGTGCGGCTCCAC
TGCCTTAACATGGTGTTTACCTCAGGTTTTATCTAGACATAGTAAAGTAAGAACTTAAAGAGAC
TCTCTTTGCAATAATGGTGGTTCAAGCACAATCTCATTCTGAAACATCCAGTCAAAAAGCGTAG
CGTGCTTGGGGTGTGGAGTGAGCTTCCACTTACAGTAGCACGCTGATTAAAGCACATGGCGACA
CTGATGATGCTCGGGGCAAGAAAGTGGGCTTAAAATTGTGGAAGCAGCAGTAAGGCGGACAGCC
TGTGCCTCGTTGGGTCCTTCAGTAAGTGTGCATCAAGGGGAGAAGGGCTGTGTTAGCCGGTGGG
AACAGGCTCCCAGGGTCCCCACATGCCATGCCTGACTCGCCTGGGCTTTGCGTGGATTATTTAA
TTAATTCTCCACAAGTAGAAATACTTATCCCCATTTTATAGATGAGGAAATAGAGGCTTTAGAG
AGTATGGGCAGTTTCCTGAAGAGCCCATGGTTTTTGAAAGTGAAGTGTTTCTAAGTCCCATGCA
GAGATGTTTCTCTTTTGAAATGAGGGGAGCCTTTACTAAAACAGTTTCCCTGTAGCCCCTGCGC
TGGGCCCTGTAATTTACCTCAGAATTCTCAAGGTAAGTTTTATTATTCTAGCAGTTTAATTTTA
TTATGTCTATGGGATGAGGATATATGCTTAAATTAGGAAAATCCCTTAACACTGGGAGAGAACT
TTCCTACTTTTATTTTTTCCTTACGTTTTTTTCATATTTTAACTCTATTGCTGTAGTCAGCATT
TTAAACCATTGTTTTGTTTCTAGGAAATATGCGTGCATGTGTGCATGCTTACCCTCCCACCCCC
GACATTATTGAGGTCTGCTTTGAAATTCTGACATCTTATAGGTTTCCAGTGATAACAGTTTTAA
TTTTAGTATGTGGACTTTTTATTACAAATGTATATTGTAATTAAAAAAATAGAGTGAAAATACT
TTTTAAGAACAGACAAAAGAGCCTTTCCCACGAAGTGAGAACACCGGGGTTACTCAGTGGAGAT
ACTAAGTTGCTGGTGTGGTTTAAGGCAGCTCGCTATATTTACCGTGTCTTTTGCCTTTGCTGTG
CTCTTTTCACTCTGGCCTGTAAGTTCTTCTCCTACCTAACTTGGTTCCAACAACCATCTTTTAA
TTAAATTGAAGTTGCACTTAAATTTCTGATGTAGGTGGCGTTGCCAGTCCTTCCTAAAAGGACA
AGAATATCCTCTCTGCACGGTACCTGGGTGTTGCTGTTCACTGTGTTCTGTGAAGGAGGAGGGG
AAAGTGAGGTGTAAAGAAGTCTTTCTGAGAACATTAGGGACCGATGTTAAATTTGATTAAAAAC
AATCAGGAAATTATAACATTTTAATCATTGAGTTGAGGTTTTGGCTTAATATTTCATTCTTAAG
TGACAGAAATGATTCACTGAGCCATATTTTTTAGGGCCAATCAAATAGAAGCAGCCAGGGGTTG
CATATCTGTTCATTGCAGATTGAAACATTGTAATTTAGGCTTCTCAAATTATTTAGTATATTGA
GTTTAGCTGTTAGCATTTCATGTTTGTGTTGTAATTTGTTCAATTTGAAACCTTTTAATAAAAC
CCGGGTAGTTCTACCTTAAAAAAAAAAGGACACCCCTCTGCTTAAAGGAAGTGGTGCTTCCTGC
TTTCATAAACAGTCATGTGCATAGCTTAGCAAGGCCTGTGCTCTGGAGCGCCGTCCCTTTACAG
CACCATTGAATCCCAGCCCGAACAGAAGTACTGTGAATCCTGTGGCCTCATTCTGAACAAAAGG
GATTAGGGAAGAAAAATCTCTTGATATAAGGCTTGTAAGCAAGGGCGGGCAATCTTGGTTGTGA
ATATTTTCTGATTTTTCCAGAAATCAAGCAGAAGATTGAGCTGCTGATGTCAGTTAACTCTGAG
AAGTCGTCCTCTTCAGAAAGGTACAGCTACATCTCTTGCATGAACAATTAATGGGGCAACATTG
CCAAGAAACAAACAGGACTTACCTTTCCCTTGTCAAGTTTGCTATGGAACGTGTTGTACTGCAT
GCTGGCGTTGTGCTGGATTGAAGATGTGTATTTGGGCAAGCCGTTCTGCTTTGCGAGGGGAAAT
TGATTTTTTTAGAAAAACAGTCAGTCTAATCAGCTGCAGCATGCGCACCATAACACAGCAGATC
GCTGGCTCAAGTGTGGCAGCTGCTGAAAGCTTAAAAAATAATTTAACCAAAAAAAAAAAAAATC
TTGCTTTTTAAAGGACGTAATGAGATTTTTGTTCTTGTATTCTGAGGTTGCTGGTATATAGAAT
TCCCAAGGTTATTTGTAAATATCTAGCTTAAACAGTTGATTTTTTTCCCTGTAATAAGTCTATA
TATATTTTTAATGAACAAAGGGAGTGCCATTTGTACGTAGCTTAGGAATGCAAACCCACAGATT
AGTCACATCTGAAAAAGAGATCTGATGTTTCTTCAAGTGTCTGCCAGGGAAGAGTCCCTGCATG
CAGTGATGGTTCACGCCTGCAGGCCGGAGCCTCAACAGAAAGCTCCTTTAGTTCCTCCTCCTCC
ACCACCGCCACCGCCACCACCACTGCCAGACCCCGTGCCTCCAGAGCCAGAGGAGGAGATTCTG
GGGTCAGATGATGAGGAGCAGGAGGACCCCGCGGATTACTGCAAAGGTGGCTATCATCCAGTGA
AAATCGGAGACCTCTTCAATGGTCGCTATCATGTCATTAGGAAGCTAGGATGGGGGCACTTTTC
CACCGTCTGGCTATGCTGGGATATGCAAGGGAAGAGGTTTGTCGCCATGAAAGTTGTAAAAAGT
GCACAGCATTATACAGAGACAGCCTTGGATGAAATTAAATTGCTCAAATGTGTTCGAGAAAGTG
ACCCCAGTGACCCAAACAAAGACATGGTAGTCCAGCTAATCGATGACTTCAAGATCTCAGGCAT
GAATGGGATACATGTCTGCATGGTCTTCGAAGTACTTGGTCACCATCTCCTCAAATGGATCATC
AAGTCCAACTATCAAGGCCTCCCAGTCCGCTGTGTGAAGAGTATCATTCGACAGGTCCTTCAGG
GCTTAGACTATCTACACAGCAAGTGCAAGATAATCCACACTGATATCAAGCCGGAGAACATCCT
GATGTGTGTGGACGGCGCGTACGTGCGGAGAATGGCGGCCGAGGCTACGGAGTGGCAGAAAGCA
GGTGCTCCTCCTCCTTCTGGGTCTGCAGTGAGTACGGCTCCACAGCAGAAACCTATAGGAAAAA
TATCTAAAAACAAAAAGAAAAAGCTAAAAAAGAAACAGAAGAGGCAGGCTGAGTTGCTGGAGAA
GCGCCTGCAGGAGATTGAGGAATTGGAGAGAGAAGCCGAAAGGAAAATCCTAGAAGAGAACACC
ACCTCTGCAGAAGCTTCCAGTGAGCAAGATGGAGAATGCCAGCCTGAGGTGAAACTGAAAGAGG
CCGAGTTAGAGGACACAACTGAGGAAGAGACAGCAAAGGACAATGGTGAAGTTGAAGACCAGGA
AGAGAAAGAAGACACAGAGAAGGAAAACACTGAGAAGGATGAAGATGATGTTGAACAGGAACTT
GAGAACATAGACCCTACGTGGATGGAGTCCCCTAAGGCCAACGGCCATATTGAAAATGGCCTGT
TTTTACTGGAGCAGCAGCTGGAGGATGAAGAGGATGAGGAAGATGACTGTGCAAACCCCGAGGA
GTATAACCTGGATGAACCAAATGCGGAGAGTGATTATACGTATAGCAGCTCCTATGAACAATTC
AATGGTGAATTGCCAAACGGACAGCCTAAGAGTCCAGAGTTTCCCACACCGCTGTTTTCTGGGC
CCTTAGAACCTGTGGCCTCTGACTCTGTGCTGTCAGAGGGATCACCACTCACCGAGCCAGAGGA
AAGCAGTCCATCCCGTGACAGAAGCAGGACAGTTTCAGCCTCCAGTACTGGAGACTTGCCAAAA
ACAAAAACCCGGGCAGCTGACCTGTTGGTGAACCCTCTGGATCCACAGAATGCAGATAAAATTA
GAGTAAAAATTGCTGACCTGGGAAATGCTTGTTGGGTGCATAAACATTTCACAGAGGATATCCA
AACACGTCAGTATAGGTCCATAGAGGTTTTGATAGGAGCAGGCTACAGTACACCTGCAGACATT
TGGAGTACAGCATGCATGGCATTTGAGCTGGCAACAGGAGACTATTTGTTCGAACCGCATTCTG
GGGAAGACTATTCCAGAGATGAAGACCACATAGCCCACATCATAGAGCTGCTAGGCAGTATCCC
AAGGCACTTTGCTCTGTCTGGAAAATACTCCCGGGAGTTCTTCAACCGCAGAGATCACATAGCA
TTGATCATTGAACTGCTGGGGAAAGTCCCTCGAAAATACGCTATGTTGGGGAAATATTCCAAGG
AGTTTTTCACCAGAAAAGGAGAACTGCGGCACATCACCAAGCTGAAGCCCTGGAGCCTCTTTGA
TGTTCTTGTGGAAAAGTATGGCTGGCCCCATGAAGATGCTGCACAGTTTACAGATTTCCTGATC
CCAATGTTAGAGATGGTTCCAGAAAAACGAGCCTCAGCTGGCGAATGCCTTCGGCATCCTTGGT
TGAATTCTTAGCAGATTCTACAAATATAGCATTCTGAGCTAGCAAATTTTTCCCAGTACATTGG
ACCTAAACAGTGGCTCTCATTCTTTAACAGGATTACAAGTGAGCGGGCTCCACCCAGACCTTTG
TTTTGCTTTGAGGTACTGTTGTTTGACACTTCGCTTCCTGTGCACCACGGTCCTGGGGAAGGGT
GGTCTTTGTCTTCAGCTAAGTAGTTTACTCGCCATTTTCTTCTGGAAACAATAACATGTCTCTA
AGCATTGTTTCTTGTGTTGTGTGACATTCAAATGTCATTTTTTTTTTGAACGAAAAATACTTTC
CCCTTTGTGTTTTGGCAGGTTCGTTAACTATTTATGAAGACACATTTTAGCTGAGTATTCTATA
ATTTACACTCTTAAGAAATTATCAGTTGGAACCAAGAAAGAGCAAGGGAATGTACAATGTTCTC
TTCTGGCGAGGGGAAGTCAGTCCCCCTGTATTATATGTATGTAACCATTCATCTGCACAGATAG
GGCGAGGAGTCCCGCGCGGAAAGCCGCCCGCCCTGAGCTTCTTAGCCTCCACTGCATGTTTCGG
GTTTCCCACTGCTTCAAGAAGTTGCACAAACTTTTCATCCCGTAGCAGTCCGAGTGGCTCTGGA
TTAGGTGCCATGCCCTCTGTGGCCCAGCAAGAGAGAAAAACATTAAAATTGACACTATAATCTA
GCAGTTCCATTTGTATTTTGCATATTTTTAAAACTATGTTTAAAAACATGTGATGGCCCAGTAC
CATCTAGTGTTGCCTCTTCCCAGCACTGTAAGTTAAATGCGTTGTTTAAATTGGACAAGAGAAA
TATGTTCAGTGTGTGGAATGAAAAAAATAATATATTTTCGGAAAAGCATGATCAGTGTTTGTTT
AAAACACAAGGTGTGTTTCTACAGTTTGCAGCGCAGTGGACAGAACACGCCTCACAGCTTACAG
GTAGCCGTGATCATGTTCATTCCACCGGCAGCTTTACTTGCTACTGCGGCTCCCCTTGCCTTTT
CATTACCGCCCATGAATGAGAAGGTCATTTCCCCTTTGCAGAGCGCATACAGTTTTAGTTTATG
CATTTCCTTAAAATTAACTGTAGAATCCAGGACGCAGACATTAGTAGGCAATACTATTTTAGAG
TGTCTCATAGGAGGTGTATTTAACCTCTTTTAGAAGTCAGTGGATTGAATGTCTTTTTTAAAAA
ATTTTTATTCATTAAGGTGCCTCGTTTTTTCTTGACTTTGTCCATTAACATTTATCCATTTGCC
TTTGCAATAATTAGATTGTGAAAAGCTAACAAGTGTTGTAACAATAATCCTTTGTTTGGGGTGC
TTGCACTTGTCTTAAAAATTAAAGTGTTTTGGGGTGTTTTTCCAGACATTGCCTTGGTTATTGC
CCTGCATTTGAAGAGTCAGAATCAACATACACTGCTGTCAGTAGAGCGCCAACAAAGCTAAGGA
GGTGCAGAATGGATTTCATGAGCCAGGCTTTAGTTATATGTTTCATCATAAGTGGGGGGCGTTC
TCCCCTGCCCCCAGTCTTTCCTTCTGGGGACAAGACACATATCCCTCCTAGGAGTTAACTTTAT
TCCGTCACACACTGAAGTGAGGCAGGTACCACTCATTCATAAACTATGCATGCTGAGTTTTTCT
AATGAGCCTGTGGGTTTCCTTGTGGAGCCTGTGTTAGATGGTGGCTGTTAAGTCATGGTTTCTA
TAGAAACATTCCTATAAGAACCACAGAGTATGTTTATGTCTTCCCTACCTCTGAAAGAACTTTT
AGTTTTTGAATGAAATTTGTCTAATGCAGTTAGAAATATCAAGTTGGAAAAGAAAGCTAGAATA
TTAACCTTGGTGATTCTATCAGATTCTTGGTAGCAGGATGATAAAGAATTAAAGGTTGGCTGTG
GTGGTGCACGCCTTTAGCACTTGGGAGGCAGAGGTAGGAAGATCTGAGTTTGAGGCCAGCCTGG
TCTGCAGAAGTTCCAGGCCATCCAAGGCTATATAGTGAGATCCCATATTGAAAGCCTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGAGGAAGAAGGAAATGAATAAAAGCTTAAAGTGAACCGCTGG
TTATCTGGAACATGATAGTCAACTCAGTCTTTTTAGGGGAAAGACCCTGTGAAATTTTTATGGA
CAATTAGAAGCAGTGGGTCTTCTATGTGACTTAAACAGATTCAGAAGTAGCTAATCTCAAAATC
CGCAGAACTGTACAGAGACAAAGTGGGCATTAGGGAGTTTGAAAGAAGTATACTTTTTAGATGA
TAGCTGCTTGTTTTTCCATGTTCCCTGCACCGTGCGTGATTTAACAGGTATGAGTAAAACTTTT
ATTGGAATAGAAAACATGTTCAGATTATTTTTCTTTTCTTGTTTTTTGAGGCAAGTTCTCAAGC
CATGGCTGGCCTTTAACTCAGAGATCTGCCTACCTAGGCATTCTAGCCCCCTCCTATCCCTCAC
ACACGCACACACACACCCTCTCTCTTTCAATTAAGTTTGTAGAGTGTGTCCATTAAAGATTATA
TTTAGTTGATGTCTTTCAGTTTGCACACGAGCTTTCATTGTGGAATTACTTTATAGCTGGCAAC
TTGGAAAGTCTGTGGACAGGTGACTTTACAGATGAACACTGCTGGCTTCTTTGGTCTGTCTGAA
ATTATCAAGGAGGAACAGTGTGAACCCATCCAGTTTTCAGACTAAGTTTCTTTATTAAATGTCC
TAAGGTGAACATTGGCAAGTCAAAGATGGCATGGTAACTGGTGTTCTTCAAAAACTTGAAGATG
ATTGGTTTTAAGCCCTGAATGAGCTGTTTCTCAAATACCACCAAAGTTAACTTTCAAATGGGAA
TTGAATGATAAAACATGATTTAAGTCACTAAA

hide sequence

RefSeq Acc Id:

XM_017592513 ⟹ XP_017448002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,464,684 - 11,654,614 (+)	NCBI
Rnor_6.0	4	7,994,025 - 8,187,455 (+)	NCBI

Sequence:

show sequence

CACTCGCTATGGGAAAACCCAGCCAGTCCAGCAGCTCTATGGAGAGAGCTAGGCTGTGAGGAGG
AGACCTATCTGCCAGTGCCTGTTAGCATAGGAGGCCTTCTGTTAAACAGCCATGTGAAGAGTCG
CCTTAGGAACACGGCCTCCAGCTTCCCTCAAGCCTTCGGATGACTGAAGCCTCCGGATGACTGA
AGCCTTGGGCAGCGTCTCCTGTCAGGAGCTCAGTTGCCTGTGTGCTCCTGAACCACAGACTCTG
CCGGAGCCTCAACAGAAAGCTCCTTTAGTTCCTCCTCCTCCACCACCGCCACCGCCACCACCAC
TGCCAGACCCCGTGCCTCCAGAGCCAGAGGAGGAGATTCTGGGGTCAGATGATGAGGAGCAGGA
GGACCCCGCGGATTACTGCAAAGGTGGCTATCATCCAGTGAAAATCGGAGACCTCTTCAATGGT
CGCTATCATGTCATTAGGAAGCTAGGATGGGGGCACTTTTCCACCGTCTGGCTATGCTGGGATA
TGCAAGGGAAGAGGTTTGTCGCCATGAAAGTTGTAAAAAGTGCACAGCATTATACAGAGACAGC
CTTGGATGAAATTAAATTGCTCAAATGTGTTCGAGAAAGTGACCCCAGTGACCCAAACAAAGAC
ATGGTAGTCCAGCTAATCGATGACTTCAAGATCTCAGGCATGAATGGGATACATGTCTGCATGG
TCTTCGAAGTACTTGGTCACCATCTCCTCAAATGGATCATCAAGTCCAACTATCAAGGCCTCCC
AGTCCGCTGTGTGAAGAGTATCATTCGACAGGTCCTTCAGGGCTTAGACTATCTACACAGCAAG
TGCAAGATAATCCACACTGATATCAAGCCGGAGAACATCCTGATGTGTGTGGACGGCGCGTACG
TGCGGAGAATGGCGGCCGAGGCTACGGAGTGGCAGAAAGCAGGTGCTCCTCCTCCTTCTGGGTC
TGCAGTGAGTACGGCTCCACAGCAGAAACCTATAGGAAAAATATCTAAAAACAAAAAGAAAAAG
CTAAAAAAGAAACAGAAGAGGCAGGCTGAGTTGCTGGAGAAGCGCCTGCAGGAGATTGAGGAAT
TGGAGAGAGAAGCCGAAAGGAAAATCCTAGAAGAGAACACCACCTCTGCAGAAGCTTCCAGTGA
GCAAGATGGAGAATGCCAGCCTGAGGTGAAACTGAAAGAGGCCGAGTTAGAGGACACAACTGAG
GAAGAGACAGCAAAGGACAATGGTGAAGTTGAAGACCAGGAAGAGAAAGAAGACACAGAGAAGG
AAAACACTGAGAAGGATGAAGATGATGTTGAACAGGAACTTGAGAACATAGACCCTACGTGGAT
GGAGTCCCCTAAGGCCAACGGCCATATTGAAAATGGCCTGTTTTTACTGGAGCAGCAGCTGGAG
GATGAAGAGGATGAGGAAGATGACTGTGCAAACCCCGAGGAGTATAACCTGGATGAACCAAATG
CGGAGAGTGATTATACGTATAGCAGCTCCTATGAACAATTCAATGGTGAATTGCCAAACGGACA
GCCTAAGAGTCCAGAGTTTCCCACACCGCTGTTTTCTGGGCCCTTAGAACCTGTGGCCTCTGAC
TCTGTGCTGTCAGAGGGATCACCACTCACCGAGCCAGAGGAAAGCAGTCCATCCCGTGACAGAA
GCAGGACAGTTTCAGCCTCCAGTACTGGAGACTTGCCAAAAACAAAAACCCGGGCAGCTGACCT
GTTGGTGAACCCTCTGGATCCACAGAATGCAGATAAAATTAGAGTAAAAATTGCTGACCTGGGA
AATGCTTGTTGGGTGCATAAACATTTCACAGAGGATATCCAAACACGTCAGTATAGGTCCATAG
AGGTTTTGATAGGAGCAGGCTACAGTACACCTGCAGACATTTGGAGTACAGCATGCATGGCATT
TGAGCTGGCAACAGGAGACTATTTGTTCGAACCGCATTCTGGGGAAGACTATTCCAGAGATGAA
GACCACATAGCCCACATCATAGAGCTGCTAGGCAGTATCCCAAGGCACTTTGCTCTGTCTGGAA
AATACTCCCGGGAGTTCTTCAACCGCAGAGATCACATAGCATTGATCATTGAACTGCTGGGGAA
AGTCCCTCGAAAATACGCTATGTTGGGGAAATATTCCAAGGAGTTTTTCACCAGAAAAGGAGAA
CTGCGGCACATCACCAAGCTGAAGCCCTGGAGCCTCTTTGATGTTCTTGTGGAAAAGTATGGCT
GGCCCCATGAAGATGCTGCACAGTTTACAGATTTCCTGATCCCAATGTTAGAGATGGTTCCAGA
AAAACGAGCCTCAGCTGGCGAATGCCTTCGGCATCCTTGGTTGAATTCTTAGCAGATTCTACAA
ATATAGCATTCTGAGCTAGCAAATTTTTCCCAGTACATTGGACCTAAACAGTGGCTCTCATTCT
TTAACAGGATTACAAGTGAGCGGGCTCCACCCAGACCTTTGTTTTGCTTTGAGGTACTGTTGTT
TGACACTTCGCTTCCTGTGCACCACGGTCCTGGGGAAGGGTGGTCTTTGTCTTCAGCTAAGTAG
TTTACTCGCCATTTTCTTCTGGAAACAATAACATGTCTCTAAGCATTGTTTCTTGTGTTGTGTG
ACATTCAAATGTCATTTTTTTTTTGAACGAAAAATACTTTCCCCTTTGTGTTTTGGCAGGTTCG
TTAACTATTTATGAAGACACATTTTAGCTGAGTATTCTATAATTTACACTCTTAAGAAATTATC
AGTTGGAACCAAGAAAGAGCAAGGGAATGTACAATGTTCTCTTCTGGCGAGGGGAAGTCAGTCC
CCCTGTATTATATGTATGTAACCATTCATCTGCACAGATAGGGCGAGGAGTCCCGCGCGGAAAG
CCGCCCGCCCTGAGCTTCTTAGCCTCCACTGCATGTTTCGGGTTTCCCACTGCTTCAAGAAGTT
GCACAAACTTTTCATCCCGTAGCAGTCCGAGTGGCTCTGGATTAGGTGCCATGCCCTCTGTGGC
CCAGCAAGAGAGAAAAACATTAAAATTGACACTATAATCTAGCAGTTCCATTTGTATTTTGCAT
ATTTTTAAAACTATGTTTAAAAACATGTGATGGCCCAGTACCATCTAGTGTTGCCTCTTCCCAG
CACTGTAAGTTAAATGCGTTGTTTAAATTGGACAAGAGAAATATGTTCAGTGTGTGGAATGAAA
AAAATAATATATTTTCGGAAAAGCATGATCAGTGTTTGTTTAAAACACAAGGTGTGTTTCTACA
GTTTGCAGCGCAGTGGACAGAACACGCCTCACAGCTTACAGGTAGCCGTGATCATGTTCATTCC
ACCGGCAGCTTTACTTGCTACTGCGGCTCCCCTTGCCTTTTCATTACCGCCCATGAATGAGAAG
GTCATTTCCCCTTTGCAGAGCGCATACAGTTTTAGTTTATGCATTTCCTTAAAATTAACTGTAG
AATCCAGGACGCAGACATTAGTAGGCAATACTATTTTAGAGTGTCTCATAGGAGGTGTATTTAA
CCTCTTTTAGAAGTCAGTGGATTGAATGTCTTTTTTAAAAAATTTTTATTCATTAAGGTGCCTC
GTTTTTTCTTGACTTTGTCCATTAACATTTATCCATTTGCCTTTGCAATAATTAGATTGTGAAA
AGCTAACAAGTGTTGTAACAATAATCCTTTGTTTGGGGTGCTTGCACTTGTCTTAAAAATTAAA
GTGTTTTGGGGTGTTTTTCCAGACATTGCCTTGGTTATTGCCCTGCATTTGAAGAGTCAGAATC
AACATACACTGCTGTCAGTAGAGCGCCAACAAAGCTAAGGAGGTGCAGAATGGATTTCATGAGC
CAGGCTTTAGTTATATGTTTCATCATAAGTGGGGGGCGTTCTCCCCTGCCCCCAGTCTTTCCTT
CTGGGGACAAGACACATATCCCTCCTAGGAGTTAACTTTATTCCGTCACACACTGAAGTGAGGC
AGGTACCACTCATTCATAAACTATGCATGCTGAGTTTTTCTAATGAGCCTGTGGGTTTCCTTGT
GGAGCCTGTGTTAGATGGTGGCTGTTAAGTCATGGTTTCTATAGAAACATTCCTATAAGAACCA
CAGAGTATGTTTATGTCTTCCCTACCTCTGAAAGAACTTTTAGTTTTTGAATGAAATTTGTCTA
ATGCAGTTAGAAATATCAAGTTGGAAAAGAAAGCTAGAATATTAACCTTGGTGATTCTATCAGA
TTCTTGGTAGCAGGATGATAAAGAATTAAAGGTTGGCTGTGGTGGTGCACGCCTTTAGCACTTG
GGAGGCAGAGGTAGGAAGATCTGAGTTTGAGGCCAGCCTGGTCTGCAGAAGTTCCAGGCCATCC
AAGGCTATATAGTGAGATCCCATATTGAAAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
AGGAAGAAGGAAATGAATAAAAGCTTAAAGTGAACCGCTGGTTATCTGGAACATGATAGTCAAC
TCAGTCTTTTTAGGGGAAAGACCCTGTGAAATTTTTATGGACAATTAGAAGCAGTGGGTCTTCT
ATGTGACTTAAACAGATTCAGAAGTAGCTAATCTCAAAATCCGCAGAACTGTACAGAGACAAAG
TGGGCATTAGGGAGTTTGAAAGAAGTATACTTTTTAGATGATAGCTGCTTGTTTTTCCATGTTC
CCTGCACCGTGCGTGATTTAACAGGTATGAGTAAAACTTTTATTGGAATAGAAAACATGTTCAG
ATTATTTTTCTTTTCTTGTTTTTTGAGGCAAGTTCTCAAGCCATGGCTGGCCTTTAACTCAGAG
ATCTGCCTACCTAGGCATTCTAGCCCCCTCCTATCCCTCACACACGCACACACACACCCTCTCT
CTTTCAATTAAGTTTGTAGAGTGTGTCCATTAAAGATTATATTTAGTTGATGTCTTTCAGTTTG
CACACGAGCTTTCATTGTGGAATTACTTTATAGCTGGCAACTTGGAAAGTCTGTGGACAGGTGA
CTTTACAGATGAACACTGCTGGCTTCTTTGGTCTGTCTGAAATTATCAAGGAGGAACAGTGTGA
ACCCATCCAGTTTTCAGACTAAGTTTCTTTATTAAATGTCCTAAGGTGAACATTGGCAAGTCAA
AGATGGCATGGTAACTGGTGTTCTTCAAAAACTTGAAGATGATTGGTTTTAAGCCCTGAATGAG
CTGTTTCTCAAATACCACCAAAGTTAACTTTCAAATGGGAATTGAATGATAAAACATGATTTAA
GTCACTAAA

hide sequence

RefSeq Acc Id:

XM_039107226 ⟹ XP_038963154

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,475,526 - 11,655,991 (+)	NCBI

RefSeq Acc Id:

XM_039107227 ⟹ XP_038963155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,475,258 - 11,655,991 (+)	NCBI

RefSeq Acc Id:

XM_039107228 ⟹ XP_038963156

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,475,268 - 11,655,991 (+)	NCBI

RefSeq Acc Id:

XM_039107229 ⟹ XP_038963157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,475,526 - 11,655,991 (+)	NCBI

RefSeq Acc Id:

XM_039107230 ⟹ XP_038963158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,475,938 - 11,654,614 (+)	NCBI

RefSeq Acc Id:

XM_039107231 ⟹ XP_038963159

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,475,277 - 11,654,614 (+)	NCBI

RefSeq Acc Id:

XM_039107232 ⟹ XP_038963160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,464,684 - 11,654,614 (+)	NCBI

RefSeq Acc Id:

XM_039107233 ⟹ XP_038963161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,475,282 - 11,655,991 (+)	NCBI

RefSeq Acc Id:

XM_039107234 ⟹ XP_038963162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,475,991 - 11,654,614 (+)	NCBI

RefSeq Acc Id:

XM_039107235 ⟹ XP_038963163

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,553,965 - 11,655,991 (+)	NCBI

RefSeq Acc Id:

XM_039107236 ⟹ XP_038963164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,548,844 - 11,655,991 (+)	NCBI

RefSeq Acc Id:

XM_039107237 ⟹ XP_038963165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,494,577 - 11,655,991 (+)	NCBI

RefSeq Acc Id:

XM_039107238 ⟹ XP_038963166

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	11,476,122 - 11,655,991 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100045	(Get FASTA)	NCBI Sequence Viewer
	XP_006235965	(Get FASTA)	NCBI Sequence Viewer
	XP_017448002	(Get FASTA)	NCBI Sequence Viewer
	XP_038963154	(Get FASTA)	NCBI Sequence Viewer
	XP_038963155	(Get FASTA)	NCBI Sequence Viewer
	XP_038963156	(Get FASTA)	NCBI Sequence Viewer
	XP_038963157	(Get FASTA)	NCBI Sequence Viewer
	XP_038963158	(Get FASTA)	NCBI Sequence Viewer
	XP_038963159	(Get FASTA)	NCBI Sequence Viewer
	XP_038963160	(Get FASTA)	NCBI Sequence Viewer
	XP_038963161	(Get FASTA)	NCBI Sequence Viewer
	XP_038963162	(Get FASTA)	NCBI Sequence Viewer
	XP_038963163	(Get FASTA)	NCBI Sequence Viewer
	XP_038963164	(Get FASTA)	NCBI Sequence Viewer
	XP_038963165	(Get FASTA)	NCBI Sequence Viewer
	XP_038963166	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61879	(Get FASTA)	NCBI Sequence Viewer
	EDL99396	(Get FASTA)	NCBI Sequence Viewer
	EDL99397	(Get FASTA)	NCBI Sequence Viewer
	EDL99398	(Get FASTA)	NCBI Sequence Viewer
	EDL99399	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059855
	ENSRNOP00000059855.1
	ENSRNOP00000070149
	ENSRNOP00000070149.2
	ENSRNOP00000080095
	ENSRNOP00000080095.1
	ENSRNOP00000096635.1

RefSeq Acc Id:

NP_001100045 ⟸ NM_001106575

- UniProtKB:

B1WBT4 (UniProtKB/TrEMBL), F7FC44 (UniProtKB/TrEMBL), A6K588 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSVNSEKSSSSERPEPQQKAPLVPPPPPPPPPPPLPDPVPPEPEEEILGSDDEEQEDPADYCKG
GYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALDEIKLLK
CVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSII
RQVLQGLDYLHSKCKIIHTDIKPENILMCVDGAYVRRMAAEATEWQKAGAPPPSGSAVSTAPQQ
KPIGKISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAERKILEENTTSAEASSEQDGECQPE
VKLKEAELEDTTEEETAKDNGEVEDQEEKEDTEKENTEKDEDDVEQELENIDPTWMESPKANGH
IENGLFLLEQQLEDEEDEEDDCANPEEYNLDEPNAESDYTYSSSYEQFNGELPNGQPKSPEFPT
PLFSGPLEPVASDSVLSEGSPLTEPEESSPSRDRSRTVSASSTGDLPKTKTRAADLLVNPLDPQ
NADKIRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL
FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFDVLVE
KYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS

hide sequence

RefSeq Acc Id:	XP_006235965 ⟸ XM_006235903
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFLQVSAREESLHAVMVHACRPEPQQKAPLVPPPPPPPPPPPLPDPVPPEPEEEILGSDDEEQE DPADYCKGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETA LDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLP VRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDGAYVRRMAAEATEWQKAGAPPPSGS AVSTAPQQKPIGKISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAERKILEENTTSAEASSE QDGECQPEVKLKEAELEDTTEEETAKDNGEVEDQEEKEDTEKENTEKDEDDVEQELENIDPTWM ESPKANGHIENGLFLLEQQLEDEEDEEDDCANPEEYNLDEPNAESDYTYSSSYEQFNGELPNGQ PKSPEFPTPLFSGPLEPVASDSVLSEGSPLTEPEESSPSRDRSRTVSASSTGDLPKTKTRAADL LVNPLDPQNADKIRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAF ELATGDYLFEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRDHIALIIELLGK VPRKYAMLGKYSKEFFTRKGELRHITKLKPWSLFDVLVEKYGWPHEDAAQFTDFLIPMLEMVPE KRASAGECLRHPWLNS hide sequence

RefSeq Acc Id:	XP_017448002 ⟸ XM_017592513
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6GM61 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEALGSVSCQELSCLCAPEPQTLPEPQQKAPLVPPPPPPPPPPPLPDPVPPEPEEEILGSDDE EQEDPADYCKGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYT ETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQ GLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDGAYVRRMAAEATEWQKAGAPPP SGSAVSTAPQQKPIGKISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAERKILEENTTSAEA SSEQDGECQPEVKLKEAELEDTTEEETAKDNGEVEDQEEKEDTEKENTEKDEDDVEQELENIDP TWMESPKANGHIENGLFLLEQQLEDEEDEEDDCANPEEYNLDEPNAESDYTYSSSYEQFNGELP NGQPKSPEFPTPLFSGPLEPVASDSVLSEGSPLTEPEESSPSRDRSRTVSASSTGDLPKTKTRA ADLLVNPLDPQNADKIRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTAC MAFELATGDYLFEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRDHIALIIEL LGKVPRKYAMLGKYSKEFFTRKGELRHITKLKPWSLFDVLVEKYGWPHEDAAQFTDFLIPMLEM VPEKRASAGECLRHPWLNS hide sequence

RefSeq Acc Id:

ENSRNOP00000070149 ⟸ ENSRNOT00000080811

RefSeq Acc Id:

ENSRNOP00000059855 ⟸ ENSRNOT00000063994

RefSeq Acc Id:

ENSRNOP00000068064 ⟸ ENSRNOT00000076429

RefSeq Acc Id:	XP_038963160 ⟸ XM_039107232
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963155 ⟸ XM_039107227
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963156 ⟸ XM_039107228
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963159 ⟸ XM_039107231
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963161 ⟸ XM_039107233
- Peptide Label:	isoform X8
- UniProtKB:	A6K588 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963154 ⟸ XM_039107226
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963157 ⟸ XM_039107229
- Peptide Label:	isoform X6
- UniProtKB:	A6K588 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963158 ⟸ XM_039107230
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963162 ⟸ XM_039107234
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZPE5 (UniProtKB/TrEMBL), A0A8I6GM61 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963166 ⟸ XM_039107238
- Peptide Label:	isoform X10
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963165 ⟸ XM_039107237
- Peptide Label:	isoform X10
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963164 ⟸ XM_039107236
- Peptide Label:	isoform X10
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963163 ⟸ XM_039107235
- Peptide Label:	isoform X10
- UniProtKB:	A0A0G2JX62 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000080095 ⟸ ENSRNOT00000108014

RefSeq Acc Id:

ENSRNOP00000096635 ⟸ ENSRNOT00000106508

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JX62-F1-model_v2	AlphaFold	A0A0G2JX62	1-712	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692800

Promoter ID:

EPDNEW_R3324

Type:

multiple initiation site

Name:

Srpk2_1

Description:

SRSF protein kinase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	8,066,724 - 8,066,784	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305107	AgrOrtholog
BioCyc Gene	G2FUF-46010	BioCyc
Ensembl Genes	ENSRNOG00000010601	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000063994	ENTREZGENE
	ENSRNOT00000063994.4	UniProtKB/TrEMBL
	ENSRNOT00000080811	ENTREZGENE
	ENSRNOT00000080811.2	UniProtKB/TrEMBL
	ENSRNOT00000106508.1	UniProtKB/TrEMBL
	ENSRNOT00000108014	ENTREZGENE
	ENSRNOT00000108014.1	UniProtKB/TrEMBL
Gene3D-CATH	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7125533	IMAGE-MGC_LOAD
InterPro	Kinase-like_dom	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
KEGG Report	rno:296753	UniProtKB/TrEMBL
MGC_CLONE	MGC:187443	IMAGE-MGC_LOAD
NCBI Gene	296753	ENTREZGENE
PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	UniProtKB/TrEMBL
	SRSF PROTEIN KINASE 2	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
PhenoGen	Srpk2	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010601	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
UniProt	A0A0G2JX62	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZPE5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GM61	ENTREZGENE, UniProtKB/TrEMBL
	A6K588	ENTREZGENE, UniProtKB/TrEMBL
	B1WBT4	ENTREZGENE, UniProtKB/TrEMBL
	F7FC44	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-01	Srpk2	SRSF protein kinase 2	Srpk2	SFRS protein kinase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-22	Srpk2	SFRS protein kinase 2	Srpk2	Srsf protein kinase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-07-13	Srpk2	Srsf protein kinase 2	Srpk2	SFRS protein kinase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-23	Srpk2	SFRS protein kinase 2	Srpk2	serine/arginine-rich protein specific kinase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Srpk2	serine/arginine-rich protein specific kinase 2	Srpk2_predicted	serine/arginine-rich protein specific kinase 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Srpk2_predicted	serine/arginine-rich protein specific kinase 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD