Tgct2_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: Tgct2_m (testicular germ cell tumor 2 (mouse)) Mus musculus

Symbol: Tgct2_m
Name: testicular germ cell tumor 2 (mouse)
RGD ID: 1357819
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm39193,328,551 - 20,539,663MOUSEQTLGRCm39
GRCm38193,278,551 - 20,562,299MOUSEQTLGRCm38
cM Map19syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tgct2_mMouseendocrine/exocrine gland phenotype  IEA 704405Created by mouse qtl pipelineMGIPMID:12566386
Tgct2_mMouseincreased testis tumor incidence  IAGP 5509061 MGIPMID:12566386
Tgct2_mMouseneoplasm  IEA 704405Created by mouse qtl pipelineMGIPMID:12566386
Tgct2_mMousereproductive system phenotype  IEA 704405Created by mouse qtl pipelineMGIPMID:12566386

#
Reference Title
Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
PMID:12566386  



1 to 20 of 952 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
68451Ighmbp2immunoglobulin mu DNA binding protein 21933090763333011Mouse
163707350LOC128927853CapStarr-seq enhancer MGSCv37_chr19:3282897-32830061933328973333006Mouse
1553419Mrpl21mitochondrial ribosomal protein L211933329973342837Mouse
9613586Mir6984microRNA 69841933389203338983Mouse
10390Cpt1acarnitine palmitoyltransferase 1a, liver1933723283435735Mouse
401715424LOC131390868STARR-seq mESC enhancer starr_453141933738743376522Mouse
1320316Tesmintestis expressed metallothionein like1934388573457823Mouse
62247Galgalanin and GMAP prepropeptide1934599153464544Mouse
1316165Ppp6r3protein phosphatase 6, regulatory subunit 31935049283626191Mouse
401703021LOC131390869STARR-seq mESC enhancer starr_453171935285473530181Mouse
14999382Gm23940predicted gene, 239401935403093540413Mouse
401714737LOC131390870STARR-seq mESC enhancer starr_453181935823553587961Mouse
5142346Gm19205predicted gene, 192051936175513618448Mouse
401837481LOC132444988STARR-positive B cell enhancer ABC_E4011936256813625982Mouse
1319618Lrp5low density lipoprotein receptor-related protein 51936348253736574Mouse
39129691LOC114827961VISTA enhancer mm17191936882473689522Mouse
9595923Gm36672predicted gene, 366721937365833742435Mouse
9622299Gm36608predicted gene, 366081937396843758168Mouse
401835590LOC132444989STARR-positive B cell enhancer ABC_E56711937581073758408Mouse
13236661810055G02RikRIKEN cDNA 1810055G02 gene1937583433767882Mouse

1 to 20 of 952 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match

1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1301197Tlyr1_mthymic lymphoma resistance 1 (mouse)Not determined192053952825313796Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse

1 to 10 of 27 rows


Database
Acc Id
Source(s)
MGD MGI:3054746

Note Type Note Reference