Stx5a (syntaxin 5A) - Rat Genome Database

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Gene: Stx5a (syntaxin 5A) Mus musculus
Analyze
Symbol: Stx5a
Name: syntaxin 5A
RGD ID: 68635
MGI Page MGI
Description: Predicted to enable SNAP receptor activity; SNARE binding activity; and protein N-terminus binding activity. Predicted to be involved in several processes, including Golgi disassembly; Golgi vesicle transport; and regulation of Golgi organization. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and vesicle. Predicted to be part of SNARE complex. Predicted to be active in Golgi membrane. Predicted to be integral component of membrane. Is expressed in mesenchyme of metanephros and metanephros epithelium. Orthologous to human STX5 (syntaxin 5); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 0610031F24Rik; D19Ertd627; D19Ertd627e; Stx5; syntaxin-5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,718,788 - 8,733,006 (+)NCBIGRCm39mm39
GRCm39 Ensembl198,718,777 - 8,733,433 (+)Ensembl
GRCm38198,741,424 - 8,755,642 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,741,413 - 8,756,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv37198,815,914 - 8,830,132 (+)NCBIGRCm37mm9NCBIm37
MGSCv36198,808,865 - 8,822,687 (+)NCBImm8
Celera198,501,497 - 8,515,650 (+)NCBICelera
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10469351   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11323436   PMID:11544199   PMID:12477932   PMID:14517553   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17015433   PMID:18799693   PMID:18836075   PMID:21267068   PMID:21460039   PMID:21873635   PMID:25131634   PMID:28000760  
PMID:29180572  


Genomics

Comparative Map Data
Stx5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,718,788 - 8,733,006 (+)NCBIGRCm39mm39
GRCm39 Ensembl198,718,777 - 8,733,433 (+)Ensembl
GRCm38198,741,424 - 8,755,642 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,741,413 - 8,756,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv37198,815,914 - 8,830,132 (+)NCBIGRCm37mm9NCBIm37
MGSCv36198,808,865 - 8,822,687 (+)NCBImm8
Celera198,501,497 - 8,515,650 (+)NCBICelera
Cytogenetic Map19ANCBI
STX5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1162,806,860 - 62,832,051 (-)EnsemblGRCh38hg38GRCh38
GRCh381162,806,860 - 62,832,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371162,574,332 - 62,599,523 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,330,945 - 62,356,136 (-)NCBINCBI36hg18NCBI36
Build 341162,330,945 - 62,356,116NCBI
Celera1151,132,647 - 51,133,735 (-)NCBI
Cytogenetic Map11q12.3NCBI
HuRef1158,903,359 - 58,928,592 (-)NCBIHuRef
CHM1_11162,457,414 - 62,482,605 (-)NCBICHM1_1
Stx5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21205,637,401 - 205,653,563 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1205,637,413 - 205,653,563 (+)Ensembl
Rnor_6.01224,939,497 - 224,955,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,939,497 - 224,955,657 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,876,955 - 231,893,830 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,409,653 - 211,426,725 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11211,568,082 - 211,585,155 (+)NCBI
Celera1203,150,296 - 203,166,494 (+)NCBICelera
Cytogenetic Map1q43NCBI
Stx5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599414,392 - 438,581 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955599414,338 - 438,581 (+)NCBIChiLan1.0ChiLan1.0
STX5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11161,516,348 - 61,541,509 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,516,348 - 61,541,509 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01158,162,269 - 58,187,427 (-)NCBIMhudiblu_PPA_v0panPan3
STX5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,862,432 - 53,883,091 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,862,541 - 53,882,536 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,468,474 - 52,489,127 (+)NCBI
ROS_Cfam_1.01854,914,883 - 54,935,546 (+)NCBI
UMICH_Zoey_3.11854,011,528 - 54,032,175 (+)NCBI
UNSW_CanFamBas_1.01853,585,960 - 53,606,622 (+)NCBI
UU_Cfam_GSD_1.01854,382,237 - 54,402,893 (+)NCBI
Stx5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,348,660 - 10,373,817 (+)NCBI
SpeTri2.0NW_004936581462,417 - 487,563 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,937,776 - 8,948,164 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,937,705 - 8,968,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,283,018 - 8,313,748 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,071,099 - 11,094,880 (+)NCBI
ChlSab1.1 Ensembl111,071,118 - 11,096,189 (+)Ensembl
Vero_WHO_p1.0NW_023666038108,413,656 - 108,438,404 (+)NCBI
Stx5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249261,270,624 - 1,286,439 (-)NCBI

Position Markers
BE457658  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,740,455 - 8,740,543UniSTSGRCm38
MGSCv37198,814,945 - 8,815,033UniSTSGRCm37
Celera198,500,528 - 8,500,616UniSTS
Cytogenetic Map19AUniSTS
Whitehead/MRC_RH1981.63UniSTS
RH134005  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,740,996 - 8,741,179UniSTSGRCm38
MGSCv37198,815,486 - 8,815,669UniSTSGRCm37
Celera198,501,069 - 8,501,252UniSTS
Cytogenetic Map19AUniSTS
RH124618  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,740,508 - 8,740,592UniSTSGRCm38
MGSCv37198,814,998 - 8,815,082UniSTSGRCm37
Celera198,500,581 - 8,500,665UniSTS
Cytogenetic Map19AUniSTS
RH125702  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,740,103 - 8,740,601UniSTSGRCm38
MGSCv37198,814,593 - 8,815,091UniSTSGRCm37
Celera198,500,176 - 8,500,674UniSTS
Cytogenetic Map19AUniSTS
Whitehead/MRC_RH1979.98UniSTS
AU014962  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,755,348 - 8,755,589UniSTSGRCm38
MGSCv37198,829,838 - 8,830,079UniSTSGRCm37
Celera198,515,356 - 8,515,597UniSTS
Cytogenetic Map19AUniSTS
cM Map19 UniSTS
Whitehead/MRC_RH1982.07UniSTS
H31976  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38198,740,110 - 8,740,542UniSTSGRCm38
MGSCv37198,814,600 - 8,815,032UniSTSGRCm37
Celera198,500,183 - 8,500,615UniSTS
Cytogenetic Map19AUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120278703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950147898980461Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19533596239336106Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4196
Count of miRNA genes:802
Interacting mature miRNAs:1069
Transcripts:ENSMUST00000010254, ENSMUST00000073430, ENSMUST00000175642, ENSMUST00000175834, ENSMUST00000175872, ENSMUST00000175901, ENSMUST00000176009, ENSMUST00000176013, ENSMUST00000176093, ENSMUST00000176182, ENSMUST00000176260, ENSMUST00000176314, ENSMUST00000176381, ENSMUST00000176404, ENSMUST00000176570, ENSMUST00000176844, ENSMUST00000176968, ENSMUST00000177322, ENSMUST00000177373
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001167799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC025794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF232709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ030996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK389576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN539678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV649852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000010254   ⟹   ENSMUSP00000010254
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,718,853 - 8,733,006 (+)Ensembl
GRCm38.p6 Ensembl198,741,489 - 8,755,642 (+)Ensembl
RefSeq Acc Id: ENSMUST00000073430   ⟹   ENSMUSP00000073136
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,719,167 - 8,733,006 (+)Ensembl
GRCm38.p6 Ensembl198,741,803 - 8,755,642 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175642
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,718,834 - 8,720,034 (+)Ensembl
GRCm38.p6 Ensembl198,741,470 - 8,742,670 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175834
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,725,954 - 8,726,742 (+)Ensembl
GRCm38.p6 Ensembl198,748,590 - 8,749,378 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175872   ⟹   ENSMUSP00000135416
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,718,852 - 8,732,966 (+)Ensembl
GRCm38.p6 Ensembl198,741,488 - 8,755,602 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175901   ⟹   ENSMUSP00000134951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,719,171 - 8,727,136 (+)Ensembl
GRCm38.p6 Ensembl198,741,807 - 8,749,772 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176009
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,720,224 - 8,726,483 (+)Ensembl
GRCm38.p6 Ensembl198,742,860 - 8,749,119 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176013   ⟹   ENSMUSP00000135465
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,719,252 - 8,733,006 (+)Ensembl
GRCm38.p6 Ensembl198,741,888 - 8,755,642 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,718,876 - 8,721,890 (+)Ensembl
GRCm38.p6 Ensembl198,741,512 - 8,744,526 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176182
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,725,867 - 8,732,422 (+)Ensembl
GRCm38.p6 Ensembl198,748,503 - 8,755,058 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,719,508 - 8,726,252 (+)Ensembl
GRCm38.p6 Ensembl198,742,144 - 8,748,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176314   ⟹   ENSMUSP00000135348
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,719,033 - 8,720,224 (+)Ensembl
GRCm38.p6 Ensembl198,741,669 - 8,742,860 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176381   ⟹   ENSMUSP00000134854
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,718,777 - 8,733,433 (+)Ensembl
GRCm38.p6 Ensembl198,741,413 - 8,756,069 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176404
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,725,897 - 8,732,348 (+)Ensembl
GRCm38.p6 Ensembl198,748,533 - 8,754,984 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176570   ⟹   ENSMUSP00000134892
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,726,763 - 8,727,458 (+)Ensembl
GRCm38.p6 Ensembl198,749,399 - 8,750,094 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,725,882 - 8,727,077 (+)Ensembl
GRCm38.p6 Ensembl198,748,518 - 8,749,713 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176968   ⟹   ENSMUSP00000135468
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,726,367 - 8,732,429 (+)Ensembl
GRCm38.p6 Ensembl198,749,003 - 8,755,065 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177322   ⟹   ENSMUSP00000135624
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,718,777 - 8,732,950 (+)Ensembl
GRCm38.p6 Ensembl198,741,413 - 8,755,586 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177373   ⟹   ENSMUSP00000134794
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,718,843 - 8,732,487 (+)Ensembl
GRCm38.p6 Ensembl198,741,479 - 8,755,123 (+)Ensembl
RefSeq Acc Id: NM_001167799   ⟹   NP_001161271
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,718,788 - 8,733,006 (+)NCBI
GRCm38198,741,424 - 8,755,642 (+)ENTREZGENE
MGSCv37198,815,914 - 8,830,132 (+)RGD
Celera198,501,497 - 8,515,650 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_019829   ⟹   NP_062803
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,719,167 - 8,733,006 (+)NCBI
GRCm38198,741,803 - 8,755,642 (+)NCBI
MGSCv37198,815,914 - 8,830,132 (+)RGD
Celera198,501,497 - 8,515,650 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030250998   ⟹   XP_030106858
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,719,145 - 8,733,004 (+)NCBI
GRCm38198,741,792 - 8,755,637 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250999   ⟹   XP_030106859
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,719,158 - 8,733,004 (+)NCBI
GRCm38198,741,802 - 8,755,637 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251000   ⟹   XP_030106860
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,718,804 - 8,733,004 (+)NCBI
GRCm38198,741,440 - 8,755,637 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_062803   ⟸   NM_019829
- UniProtKB: Q8K1E0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161271   ⟸   NM_001167799
- UniProtKB: Q8K1E0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030106860   ⟸   XM_030251000
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030106858   ⟸   XM_030250998
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030106859   ⟸   XM_030250999
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000134794   ⟸   ENSMUST00000177373
RefSeq Acc Id: ENSMUSP00000135624   ⟸   ENSMUST00000177322
RefSeq Acc Id: ENSMUSP00000073136   ⟸   ENSMUST00000073430
RefSeq Acc Id: ENSMUSP00000135468   ⟸   ENSMUST00000176968
RefSeq Acc Id: ENSMUSP00000010254   ⟸   ENSMUST00000010254
RefSeq Acc Id: ENSMUSP00000134854   ⟸   ENSMUST00000176381
RefSeq Acc Id: ENSMUSP00000135348   ⟸   ENSMUST00000176314
RefSeq Acc Id: ENSMUSP00000134892   ⟸   ENSMUST00000176570
RefSeq Acc Id: ENSMUSP00000135465   ⟸   ENSMUST00000176013
RefSeq Acc Id: ENSMUSP00000134951   ⟸   ENSMUST00000175901
RefSeq Acc Id: ENSMUSP00000135416   ⟸   ENSMUST00000175872
Promoters
RGD ID:13678802
Promoter ID:EPDNEW_M23550
Type:initiation region
Name:Stx5a_1
Description:Mus musculus syntaxin 5A , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23551  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38198,741,440 - 8,741,500EPDNEW
RGD ID:13678804
Promoter ID:EPDNEW_M23551
Type:initiation region
Name:Stx5a_2
Description:Mus musculus syntaxin 5A , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23550  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38198,741,853 - 8,741,913EPDNEW
RGD ID:6830471
Promoter ID:MM_KWN:26302
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_019829_STX5A,   UC008GMO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36198,815,711 - 8,816,812 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1928483 AgrOrtholog
Ensembl Genes ENSMUSG00000010110 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000010254 UniProtKB/TrEMBL
  ENSMUSP00000073136 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000134794 UniProtKB/TrEMBL
  ENSMUSP00000134854 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000134892 UniProtKB/TrEMBL
  ENSMUSP00000134951 UniProtKB/TrEMBL
  ENSMUSP00000135348 UniProtKB/TrEMBL
  ENSMUSP00000135416 UniProtKB/TrEMBL
  ENSMUSP00000135465 UniProtKB/TrEMBL
  ENSMUSP00000135468 UniProtKB/TrEMBL
  ENSMUSP00000135624 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000010254 UniProtKB/TrEMBL
  ENSMUST00000073430 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000175872 UniProtKB/TrEMBL
  ENSMUST00000175901 UniProtKB/TrEMBL
  ENSMUST00000176013 UniProtKB/TrEMBL
  ENSMUST00000176314 UniProtKB/TrEMBL
  ENSMUST00000176381 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000176570 UniProtKB/TrEMBL
  ENSMUST00000176968 UniProtKB/TrEMBL
  ENSMUST00000177322 UniProtKB/TrEMBL
  ENSMUST00000177373 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin-5_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56389 UniProtKB/Swiss-Prot
MGD MGI:1928483 ENTREZGENE
NCBI Gene 56389 ENTREZGENE
Pfam SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin-5_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stx5a PhenoGen
PROSITE SYNTAXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt H3BJ02_MOUSE UniProtKB/TrEMBL
  H3BJ89_MOUSE UniProtKB/TrEMBL
  H3BJE3_MOUSE UniProtKB/TrEMBL
  H3BKD6_MOUSE UniProtKB/TrEMBL
  H3BKJ7_MOUSE UniProtKB/TrEMBL
  H3BKP0_MOUSE UniProtKB/TrEMBL
  H3BKP3_MOUSE UniProtKB/TrEMBL
  H3BL25_MOUSE UniProtKB/TrEMBL
  I1E4X1_MOUSE UniProtKB/TrEMBL
  Q8K1E0 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TM79 UniProtKB/Swiss-Prot
  Q99J28 UniProtKB/Swiss-Prot
  Q9JKP2 UniProtKB/Swiss-Prot