Or5b117 (olfactory receptor family 5 subfamily B member 117) - Rat Genome Database

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Gene: Or5b117 (olfactory receptor family 5 subfamily B member 117) Mus musculus
Analyze
No known orthologs.
Symbol: Or5b117
Name: olfactory receptor family 5 subfamily B member 117
RGD ID: 1551213
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2RE5P-3787124-3786180; MOR202-; MOR202-16; olfactory receptor 1472; olfactory receptor MOR202-16; Olfr1472
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391913,430,935 - 13,431,879 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1913,430,644 - 13,433,450 (-)EnsemblGRCm39 Ensembl
GRCm381913,453,571 - 13,454,515 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1913,453,280 - 13,456,086 (-)EnsemblGRCm38mm10GRCm38
MGSCv371913,528,061 - 13,529,005 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361913,520,590 - 13,521,534 (-)NCBIMGSCv36mm8
Celera1914,124,762 - 14,125,706 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Variants

.
Variants in Or5b117
46 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:47
Interacting mature miRNAs:47
Transcripts:ENSMUST00000077501
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse

Markers in Region
UniSTS:489312  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381913,479,252 - 13,480,196UniSTSGRCm38
GRCm381913,453,571 - 13,454,515UniSTSGRCm38
MGSCv371913,553,742 - 13,554,686UniSTSGRCm37
MGSCv371913,528,061 - 13,529,005UniSTSGRCm37
Celera1914,124,762 - 14,125,706UniSTS
Celera1914,150,445 - 14,151,389UniSTS
Cytogenetic Map19C1UniSTS
UniSTS:495625  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381913,453,519 - 13,454,546UniSTSGRCm38
MGSCv371913,528,009 - 13,529,036UniSTSGRCm37
Celera1914,124,710 - 14,125,737UniSTS
Cytogenetic Map19C1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000077501   ⟹   ENSMUSP00000076707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1913,430,935 - 13,431,879 (-)Ensembl
GRCm38.p6 Ensembl1913,453,571 - 13,454,515 (-)Ensembl
Ensembl Acc Id: ENSMUST00000096201   ⟹   ENSMUSP00000093915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1913,430,644 - 13,433,450 (-)Ensembl
GRCm38.p6 Ensembl1913,453,280 - 13,456,086 (-)Ensembl
RefSeq Acc Id: NM_146690   ⟹   NP_666901
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391913,430,935 - 13,431,879 (-)NCBI
GRCm381913,453,571 - 13,454,515 (-)ENTREZGENE
MGSCv371913,528,061 - 13,529,005 (-)RGD
Celera1914,124,762 - 14,125,706 (-)RGD
cM Map19 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666901 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL61068 (Get FASTA)   NCBI Sequence Viewer  
  AAP71834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000076707
  ENSMUSP00000076707.3
  ENSMUSP00000093915.4
RefSeq Acc Id: NP_666901   ⟸   NM_146690
- UniProtKB: Q7TQQ9 (UniProtKB/TrEMBL),   Q8VFW0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000076707   ⟸   ENSMUST00000077501
Ensembl Acc Id: ENSMUSP00000093915   ⟸   ENSMUST00000096201
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TQQ9-F1-model_v2 AlphaFold Q7TQQ9 1-314 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3031306 AgrOrtholog
Ensembl Genes ENSMUSG00000058949
  ENSMUSG00000095189 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000077501 ENTREZGENE
  ENSMUST00000077501.3 UniProtKB/TrEMBL
  ENSMUST00000096201.4 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258685 UniProtKB/TrEMBL
MGD MGI:3031306 ENTREZGENE
NCBI Gene 258685 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5b117 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q7TQQ9 ENTREZGENE, UniProtKB/TrEMBL
  Q8VFW0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or5b117  olfactory receptor family 5 subfamily B member 117  Olfr1472  olfactory receptor 1472  Symbol and/or name change 5135510 APPROVED