Znrd2 (zinc ribbon domain containing 2)

Gene: Znrd2 (zinc ribbon domain containing 2) Mus musculus

Analyze

Symbol:

Znrd2

Name:

zinc ribbon domain containing 2

RGD ID:

1323500

MGI Page

MGI

Description:

Is expressed in several structures, including alimentary system; axial musculature; metanephros; nervous system; and submandibular gland primordium. Orthologous to human ZNRD2 (zinc ribbon domain containing 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1500016H19Rik; autoantigen p27 homolog; C184L; C184L-22; Sjoegren syndrome/scleroderma autoantigen 1 homolog; Sjogren syndrome/scleroderma autoantigen 1; Sjogren's syndrome/scleroderma autoantigen 1 homolog; Sjogren's syndrome/scleroderma autoantigen 1 homolog (human); Ss; Sssca1; zinc ribbon domain-containing protein 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNRD2 (zinc ribbon domain containing 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Znrd2 (zinc ribbon domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znrd2 (zinc ribbon domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNRD2 (zinc ribbon domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNRD2 (zinc ribbon domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znrd2 (zinc ribbon domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNRD2 (zinc ribbon domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNRD2 (zinc ribbon domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znrd2 (zinc ribbon domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNRD2 (zinc ribbon domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Znrd2 (zinc ribbon domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sssca1 (Sjogren syndrome/scleroderma autoantigen 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	Y39A1A.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	znrd2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,780,334 - 5,781,760 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	5,778,116 - 5,781,741 (-)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	19	5,780,331 - 5,781,760 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	5,730,306 - 5,731,732 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,728,088 - 5,731,713 (-)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	19	5,730,303 - 5,731,732 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,730,306 - 5,731,721 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	5,730,306 - 5,731,721 (-)	NCBI		MGSCv36	mm8
Celera	19	5,600,355 - 5,601,770 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

Bardet-Biedl syndrome (ISO)

genetic disease (ISO)

glycogen storage disease V (ISO)

high grade glioma (ISO)

intellectual disability (ISO)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

all-trans-retinoic acid (ISO)

Aroclor 1254 (EXP)

atrazine (ISO)

benzo[a]pyrene (EXP)

bisphenol A (ISO)

Brodifacoum (ISO)

butanal (ISO)

carbon nanotube (EXP)

chlorpyrifos (EXP)

clofibrate (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

cyclosporin A (EXP,ISO)

cylindrospermopsin (ISO)

dibutyl phthalate (EXP)

diclofenac (EXP)

diethyl maleate (EXP)

endosulfan (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

folic acid (EXP)

glafenine (ISO)

hydrogen peroxide (EXP)

ivermectin (ISO)

lead diacetate (EXP)

menadione (ISO)

ozone (EXP)

paracetamol (EXP)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (EXP)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP)

tetrachloroethene (EXP)

tetrachloromethane (ISO)

thalidomide (EXP)

thapsigargin (EXP)

thioacetamide (ISO)

trovafloxacin (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10512749	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11591653	PMID:12477932	PMID:12520002	PMID:15489334	PMID:16141072	PMID:16141073	PMID:16602821
PMID:19501082	PMID:21267068	PMID:21677750	PMID:28190767	PMID:28671696

Genomics

Comparative Map Data

Znrd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,780,334 - 5,781,760 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	5,778,116 - 5,781,741 (-)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	19	5,780,331 - 5,781,760 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	5,730,306 - 5,731,732 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,728,088 - 5,731,713 (-)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	19	5,730,303 - 5,731,732 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,730,306 - 5,731,721 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	5,730,306 - 5,731,721 (-)	NCBI		MGSCv36	mm8
Celera	19	5,600,355 - 5,601,770 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

ZNRD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	65,570,477 - 65,571,888 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	65,570,460 - 65,573,942 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	65,337,948 - 65,339,359 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	65,094,519 - 65,095,815 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	65,094,518 - 65,095,814	NCBI
Celera	11	62,664,332 - 62,665,628 (+)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	61,664,976 - 61,666,272 (+)	NCBI		HuRef
CHM1_1	11	65,221,841 - 65,223,137 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	65,564,709 - 65,566,120 (+)	NCBI		T2T-CHM13v2.0

Znrd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,447,010 - 212,448,793 (-)	NCBI		GRCr8
mRatBN7.2	1	203,017,682 - 203,019,465 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	203,017,682 - 203,019,465 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	211,370,366 - 211,372,274 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,463,080 - 218,464,863 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	211,154,124 - 211,155,907 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	221,087,803 - 221,089,586 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,087,803 - 221,089,586 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,020,766 - 228,022,549 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	208,357,126 - 208,358,909 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	200,553,261 - 200,555,044 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Znrd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	19,693,195 - 19,694,995 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	19,693,190 - 19,694,995 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNRD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	66,797,945 - 66,801,482 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	67,840,054 - 67,844,238 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	60,928,869 - 60,930,875 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	64,263,692 - 64,266,235 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	64,264,234 - 64,266,970 (+)	Ensembl	panpan1.1		panPan2

ZNRD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	51,634,946 - 51,636,330 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	51,634,892 - 51,637,087 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,243,329 - 50,244,713 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	52,672,071 - 52,673,455 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	52,672,017 - 52,673,324 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	51,771,991 - 51,773,375 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	51,346,019 - 51,347,403 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	52,136,392 - 52,137,776 (-)	NCBI		UU_Cfam_GSD_1.0

Znrd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,444,643 - 7,446,128 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	3,886,892 - 3,888,866 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	3,886,898 - 3,888,642 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNRD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,683,057 - 6,684,494 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,680,832 - 6,684,564 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,906,057 - 5,907,408 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNRD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	8,669,227 - 8,670,594 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	8,666,769 - 8,670,527 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	105,963,908 - 105,967,466 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znrd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	20,825,259 - 20,826,669 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	20,825,259 - 20,826,782 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Znrd2
54 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1524
Count of miRNA genes:	647
Interacting mature miRNAs:	780
Transcripts:	ENSMUST00000025885, ENSMUST00000159008, ENSMUST00000159693, ENSMUST00000160141, ENSMUST00000160852, ENSMUST00000162976
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300776	Lfp3_m	long free running period 3 (mouse)			Not determined		19	1	20328703	Mouse
4142161	Drinksac2_m	drink saccharin 2 (mouse)			Not determined			1	20695286	Mouse
4142302	Nstr1_m	nerve sheath tumor resistance QTL 1 (mouse)			Not determined		19	1	22371338	Mouse
1301271	Datd_m	dopamine transporter density (mouse)			Not determined		19	1	32340234	Mouse
4142406	Pbctlp1_m	peripheral blood cytotoxic T lymphocyte percentage 1 (mouse)			Not determined			1	32875174	Mouse
1300904	Chab5_m	cholesterol absorption 5 (mouse)			Not determined		19	1653764	35653927	Mouse
26884385	Skwq14_m	skull length QTL 14, 16 week (mouse)					19	3250000	35877400	Mouse
1301800	Faq10_m	fluctuating asymmetry QTL 10 (mouse)			Not determined		19	3323216	37323348	Mouse
1300923	Bits4_m	bitterness sensitivity 4 (mouse)			Not determined		19	3323216	37323348	Mouse
1302126	Skull26_m	skull morphology 26 (mouse)			Not determined		19	3323216	37323348	Mouse
1300591	Pas3_m	pulmonary adenoma susceptibility 3 (mouse)			Not determined		19	3323216	37323348	Mouse
1357819	Tgct2_m	testicular germ cell tumor 2 (mouse)			Not determined		19	3328551	20539663	Mouse
25394536	Skmw86_m	skeletal muscle weight 86, TA (mouse)					19	5064817	8957825	Mouse
11039522	Tbbr4_m	Trypanosoma brucei brucei response 4 (mouse)					19	5313326	39313470	Mouse

Markers in Region

AI327134

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	5,731,990 - 5,732,076	UniSTS	GRCm38
MGSCv37	19	5,731,990 - 5,732,076	UniSTS	GRCm37
Celera	19	5,602,039 - 5,602,125	UniSTS
Cytogenetic Map	19	A	UniSTS
Whitehead/MRC_RH	19	54.69	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_020491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB012865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC134563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC021593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ033851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY081504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000025885 ⟹ ENSMUSP00000025885

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,780,331 - 5,781,755 (-)	Ensembl
GRCm38.p6 Ensembl	19	5,730,303 - 5,731,727 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000159008

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,780,920 - 5,781,727 (-)	Ensembl
GRCm38.p6 Ensembl	19	5,730,892 - 5,731,699 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000159693 ⟹ ENSMUSP00000123867

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,780,335 - 5,781,760 (-)	Ensembl
GRCm38.p6 Ensembl	19	5,730,307 - 5,731,732 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000160141

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,780,335 - 5,781,688 (-)	Ensembl
GRCm38.p6 Ensembl	19	5,730,307 - 5,731,660 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000160852 ⟹ ENSMUSP00000125570

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,778,116 - 5,781,741 (-)	Ensembl
GRCm38.p6 Ensembl	19	5,728,088 - 5,731,713 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000162976 ⟹ ENSMUSP00000125679

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,780,439 - 5,781,503 (-)	Ensembl
GRCm38.p6 Ensembl	19	5,730,411 - 5,731,475 (-)	Ensembl

RefSeq Acc Id:

NM_020491 ⟹ NP_065237

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	5,780,334 - 5,781,760 (-)	NCBI
GRCm38	19	5,730,306 - 5,731,732 (-)	NCBI
MGSCv37	19	5,730,306 - 5,731,721 (-)	RGD
Celera	19	5,600,355 - 5,601,781 (-)	NCBI
cM Map	19		ENTREZGENE

Sequence:

show sequence

GGATCACTTCCGGTGAGCCCAGCAGTGACCACGGCAACATGGCCTTGAACGGTGCAGATGTCGA
CGATTTCACCTGGGAGCCTCCGACTGAAGCTGAGACGAAGGTGCTGCAGGCGCGACGGGAGCGG
CAGGATCGCATCTCCCGTCTGATGGGGGACTACCTGCTCCGTGGTTACCGCATGCTGGGCGACA
CGTGCGCCGACTGCGGGACGATCCTCCTGCAAGATAAACAGCGGAAAATCTACTGTGTGGCTTG
TCAGGAGCTCGACTCAGACGTGGATAAAGATAACCCGGCACTGAATGCACAGGCGGCGCTCTCT
CAAGCTCGGGAACACCAGCTGGCCTCATCTACAGAGCCTGCCTCGAGCTCTCGGCCCCCATCCC
AGCCACCAGTACCCCGTCCAGAGCACTGTGAAGGCGCAGCAGCCGGGCTCAAGGCAGCCCAGGC
GCCTCCTCTTCCGGCTGCACCTCCAAATACGGACGCGGTGGCTTCCACACAGACGGCCCTCCTG
CAGAAGCTAACCTGGGCGTCAGTCGAGCTGGGCTCTAGCACCTCCTTGGAGACTAGTATCCAGC
TCTGTGGGCTTATCCGGGCTTGCGCCGAGGCCCTAGGCAGCCTGAAACAGCTGGATCACTGAGA
CCTCTATCCTGATCCCTGTTCCCCTGAGAAAAACCCTCCAGAAAAACAGTTTTTCCTCCGCAAA
AAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_065237	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH21593	(Get FASTA)	NCBI Sequence Viewer
	BAA87050	(Get FASTA)	NCBI Sequence Viewer
	BAB23917	(Get FASTA)	NCBI Sequence Viewer
	BAB27938	(Get FASTA)	NCBI Sequence Viewer
	BAB28340	(Get FASTA)	NCBI Sequence Viewer
	BAB28423	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000025885
	ENSMUSP00000025885.5
	ENSMUSP00000123867.2
	ENSMUSP00000125570.2
	ENSMUSP00000125679.2
GenBank Protein	P56873	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_065237 ⟸ NM_020491

- UniProtKB:

P56873 (UniProtKB/Swiss-Prot), Q545N1 (UniProtKB/TrEMBL), Q9D002 (UniProtKB/TrEMBL), Q9CZE1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALNGADVDDFTWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGDTCADCGTILLQDK
QRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASSTEPASSSRPPSQPPVPRPEHCEGA
AAGLKAAQAPPLPAAPPNTDAVASTQTALLQKLTWASVELGSSTSLETSIQLCGLIRACAEALG
SLKQLDH

hide sequence

RefSeq Acc Id:

ENSMUSP00000123867 ⟸ ENSMUST00000159693

RefSeq Acc Id:

ENSMUSP00000025885 ⟸ ENSMUST00000025885

RefSeq Acc Id:

ENSMUSP00000125570 ⟸ ENSMUST00000160852

RefSeq Acc Id:

ENSMUSP00000125679 ⟸ ENSMUST00000162976

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P56873-F1-model_v2	AlphaFold	P56873	1-199	view protein structure

Promoters

RGD ID:

6830439

Promoter ID:

MM_KWN:26112

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

UC008GFC.1, UC008GFD.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	19	5,731,464 - 5,731,964 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913482	AgrOrtholog
Ensembl Genes	ENSMUSG00000079478	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSMUSG00000118125	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000025885	ENTREZGENE
	ENSMUST00000025885.6	UniProtKB/Swiss-Prot
	ENSMUST00000159693.2	UniProtKB/TrEMBL
	ENSMUST00000160852.8	UniProtKB/Swiss-Prot
	ENSMUST00000162976.2	UniProtKB/TrEMBL
InterPro	SSSCA1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:56390	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1913482	ENTREZGENE
NCBI Gene	56390	ENTREZGENE
PANTHER	PROTEIN ZNRD2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Auto_anti-p27	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Znrd2	PhenoGen
UniProt	E0CYU9_MOUSE	UniProtKB/TrEMBL
	F7B6D3_MOUSE	UniProtKB/TrEMBL
	P56873	ENTREZGENE
	Q545N1	ENTREZGENE, UniProtKB/TrEMBL
	Q9CZE1	ENTREZGENE, UniProtKB/TrEMBL
	Q9D002	ENTREZGENE, UniProtKB/TrEMBL
	SSA27_MOUSE	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-05-21	Znrd2	zinc ribbon domain containing 2	Sssca1	Sjogren syndrome/scleroderma autoantigen 1	Symbol and/or name change	5135510	APPROVED
2017-03-21	Sssca1	Sjogren syndrome/scleroderma autoantigen 1		Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar