Coro1b (coronin, actin binding protein 1B) - Rat Genome Database

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Gene: Coro1b (coronin, actin binding protein 1B) Mus musculus
Analyze
Symbol: Coro1b
Name: coronin, actin binding protein 1B
RGD ID: 736069
MGI Page MGI
Description: Predicted to enable Arp2/3 complex binding activity; actin filament binding activity; and identical protein binding activity. Predicted to be involved in several processes, including actin filament organization; cellular response to platelet-derived growth factor stimulus; and regulation of lamellipodium morphogenesis. Predicted to be located in several cellular components, including actin cytoskeleton; lamellipodium; and perinuclear region of cytoplasm. Is expressed in several structures, including brain; dorsal root ganglion; genitourinary system; liver; and spleen. Orthologous to human CORO1B (coronin 1B); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: coronin 1b; coronin 2; coronin-1B; coronin-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18642   Gm18683  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,198,603 - 4,204,034 (+)NCBIGRCm39mm39
GRCm39 Ensembl194,198,618 - 4,204,034 (+)Ensembl
GRCm38194,148,611 - 4,154,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,148,619 - 4,154,035 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,148,663 - 4,154,035 (+)NCBIGRCm37mm9NCBIm37
MGSCv36194,148,660 - 4,154,035 (+)NCBImm8
Celera194,019,506 - 4,025,174 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:8889548   PMID:9778037   PMID:10349636   PMID:10461187   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16027158   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:18836449   PMID:21267068   PMID:21677750   PMID:21844203   PMID:21873635   PMID:22619279   PMID:23562652   PMID:24270184   PMID:24457600   PMID:25995115  
PMID:28671696   PMID:30333137   PMID:32325033  


Genomics

Comparative Map Data
Coro1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,198,603 - 4,204,034 (+)NCBIGRCm39mm39
GRCm39 Ensembl194,198,618 - 4,204,034 (+)Ensembl
GRCm38194,148,611 - 4,154,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,148,619 - 4,154,035 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,148,663 - 4,154,035 (+)NCBIGRCm37mm9NCBIm37
MGSCv36194,148,660 - 4,154,035 (+)NCBImm8
Celera194,019,506 - 4,025,174 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.85NCBI
CORO1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1167,435,510 - 67,443,821 (-)EnsemblGRCh38hg38GRCh38
GRCh381167,435,510 - 67,443,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371167,202,981 - 67,211,280 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,962,094 - 66,967,839 (-)NCBINCBI36hg18NCBI36
Build 341166,962,093 - 66,967,509NCBI
Celera1164,538,716 - 64,544,461 (-)NCBI
Cytogenetic Map11q13.2NCBI
HuRef1163,533,695 - 63,539,469 (-)NCBIHuRef
CHM1_11167,088,588 - 67,094,362 (-)NCBICHM1_1
Coro1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21201,442,977 - 201,448,416 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1201,443,014 - 201,448,416 (+)Ensembl
Rnor_6.01219,397,827 - 219,403,253 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,397,850 - 219,403,260 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,268,473 - 226,273,904 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,733,360 - 206,738,018 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11206,886,811 - 206,891,470 (+)NCBI
Celera1198,988,122 - 198,992,780 (+)NCBICelera
Cytogenetic Map1q43NCBI
Coro1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,034,873 - 18,041,483 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,035,629 - 18,041,009 (+)NCBIChiLan1.0ChiLan1.0
CORO1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11166,108,595 - 66,114,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,108,924 - 66,113,175 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01162,796,461 - 62,802,204 (-)NCBIMhudiblu_PPA_v0panPan3
CORO1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,027,274 - 50,031,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,027,275 - 50,050,907 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,636,818 - 48,642,027 (+)NCBI
ROS_Cfam_1.01850,948,522 - 50,953,731 (+)NCBI
UMICH_Zoey_3.11850,161,842 - 50,167,053 (+)NCBI
UNSW_CanFamBas_1.01849,736,338 - 49,741,544 (+)NCBI
UU_Cfam_GSD_1.01850,530,844 - 50,536,059 (+)NCBI
Coro1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,845,223 - 5,870,137 (+)NCBI
SpeTri2.0NW_0049365992,307,974 - 2,312,487 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CORO1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,080,660 - 5,086,698 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,081,294 - 5,086,698 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,799,119 - 3,804,414 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CORO1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,820,298 - 6,825,778 (+)NCBI
ChlSab1.1 Ensembl16,820,807 - 6,825,451 (+)Ensembl
Vero_WHO_p1.0NW_023666038104,105,231 - 104,110,853 (+)NCBI
Coro1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476719,080,541 - 19,087,128 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120278703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1790
Count of miRNA genes:638
Interacting mature miRNAs:823
Transcripts:ENSMUST00000008893, ENSMUST00000123874, ENSMUST00000134194, ENSMUST00000135498, ENSMUST00000140419, ENSMUST00000142878, ENSMUST00000143613, ENSMUST00000148189, ENSMUST00000148733
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF143956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000008893   ⟹   ENSMUSP00000008893
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,618 - 4,204,034 (+)Ensembl
GRCm38.p6 Ensembl194,148,619 - 4,154,035 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123874   ⟹   ENSMUSP00000118450
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,618 - 4,200,503 (+)Ensembl
GRCm38.p6 Ensembl194,148,619 - 4,150,504 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134194
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,660 - 4,201,498 (+)Ensembl
GRCm38.p6 Ensembl194,148,661 - 4,151,499 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135498
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,201,369 - 4,203,443 (+)Ensembl
GRCm38.p6 Ensembl194,151,370 - 4,153,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140419
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,200,542 - 4,202,807 (+)Ensembl
GRCm38.p6 Ensembl194,150,543 - 4,152,808 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142878
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,627 - 4,199,553 (+)Ensembl
GRCm38.p6 Ensembl194,148,628 - 4,149,554 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143613
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,663 - 4,200,252 (+)Ensembl
GRCm38.p6 Ensembl194,148,664 - 4,150,253 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148189
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,201,579 - 4,203,873 (+)Ensembl
GRCm38.p6 Ensembl194,151,580 - 4,153,874 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148733
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,631 - 4,199,633 (+)Ensembl
GRCm38.p6 Ensembl194,148,632 - 4,149,634 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235477
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,203,061 - 4,203,716 (+)Ensembl
GRCm38.p6 Ensembl194,153,062 - 4,153,717 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236023
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,656 - 4,204,032 (+)Ensembl
GRCm38.p6 Ensembl194,148,657 - 4,154,033 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236397   ⟹   ENSMUSP00000158099
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,653 - 4,204,034 (+)Ensembl
GRCm38.p6 Ensembl194,148,654 - 4,154,035 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237125   ⟹   ENSMUSP00000157859
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,631 - 4,200,823 (+)Ensembl
GRCm38.p6 Ensembl194,148,632 - 4,150,824 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237578
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl194,198,666 - 4,200,145 (+)Ensembl
GRCm38.p6 Ensembl194,148,667 - 4,150,146 (+)Ensembl
RefSeq Acc Id: NM_011778   ⟹   NP_035908
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39194,198,653 - 4,204,034 (+)NCBI
GRCm38194,148,654 - 4,154,035 (+)NCBI
MGSCv37194,148,663 - 4,154,035 (+)RGD
Celera194,019,506 - 4,025,174 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006531741   ⟹   XP_006531804
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39194,198,611 - 4,204,034 (+)NCBI
GRCm38194,148,611 - 4,154,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531742   ⟹   XP_006531805
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39194,198,603 - 4,204,034 (+)NCBI
GRCm38194,148,612 - 4,154,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161585   ⟹   XP_036017478
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39194,198,610 - 4,204,034 (+)NCBI
RefSeq Acc Id: XM_036161586   ⟹   XP_036017479
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39194,198,610 - 4,204,034 (+)NCBI
RefSeq Acc Id: XM_036161587   ⟹   XP_036017480
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39194,198,610 - 4,204,034 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_035908   ⟸   NM_011778
- UniProtKB: Q9WUM3 (UniProtKB/Swiss-Prot),   A2RS22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531804   ⟸   XM_006531741
- Peptide Label: isoform X1
- UniProtKB: Q9WUM3 (UniProtKB/Swiss-Prot),   A2RS22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531805   ⟸   XM_006531742
- Peptide Label: isoform X1
- UniProtKB: Q9WUM3 (UniProtKB/Swiss-Prot),   A2RS22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000157859   ⟸   ENSMUST00000237125
RefSeq Acc Id: ENSMUSP00000158099   ⟸   ENSMUST00000236397
RefSeq Acc Id: ENSMUSP00000008893   ⟸   ENSMUST00000008893
RefSeq Acc Id: ENSMUSP00000118450   ⟸   ENSMUST00000123874
RefSeq Acc Id: XP_036017478   ⟸   XM_036161585
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036017479   ⟸   XM_036161586
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036017480   ⟸   XM_036161587
- Peptide Label: isoform X2
Protein Domains
DUF1899   WD_REPEATS_REGION

Promoters
RGD ID:6829816
Promoter ID:MM_KWN:25984
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC008FYZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36194,148,386 - 4,149,532 (+)MPROMDB
RGD ID:6829918
Promoter ID:MM_KWN:25983
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell
Transcripts:OTTMUST00000070153,   OTTMUST00000070154,   OTTMUST00000070155,   OTTMUST00000070156,   OTTMUST00000070157,   OTTMUST00000070158
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36194,148,424 - 4,148,924 (+)MPROMDB
RGD ID:13678400
Promoter ID:EPDNEW_M23349
Type:initiation region
Name:Coro1b_1
Description:Mus musculus coronin, actin binding protein 1B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38194,148,654 - 4,148,714EPDNEW
RGD ID:6829919
Promoter ID:MM_KWN:25985
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung,   Spleen
Transcripts:OTTMUST00000070159
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36194,149,571 - 4,150,307 (+)MPROMDB
RGD ID:6829921
Promoter ID:MM_KWN:25986
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney
Transcripts:OTTMUST00000070160,   OTTMUST00000070161
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36194,150,481 - 4,151,457 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1345963 AgrOrtholog
Ensembl Genes ENSMUSG00000024835 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000008893 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118450 UniProtKB/TrEMBL
  ENSMUSP00000157859 UniProtKB/TrEMBL
  ENSMUSP00000158099 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000008893 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000123874 UniProtKB/TrEMBL
  ENSMUST00000236397 UniProtKB/TrEMBL
  ENSMUST00000237125 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Coro1b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coronin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:23789 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1345963 ENTREZGENE
NCBI Gene 23789 ENTREZGENE
PANTHER PTHR10856 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10856:SF24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Coro1b PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DUF1899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B9Y4_MOUSE UniProtKB/TrEMBL
  A0A494BAI1_MOUSE UniProtKB/TrEMBL
  A2RS22 ENTREZGENE, UniProtKB/TrEMBL
  COR1B_MOUSE UniProtKB/Swiss-Prot
  D3YUG6_MOUSE UniProtKB/TrEMBL
  Q9WUM3 ENTREZGENE
UniProt Secondary Q3UEB1 UniProtKB/Swiss-Prot
  Q9CVA2 UniProtKB/Swiss-Prot