Gm24319 (predicted gene, 24319) - Rat Genome Database

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Gene: Gm24319 (predicted gene, 24319) Mus musculus
Analyze
Symbol: Gm24319
Name: predicted gene, 24319
RGD ID: 14997972
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391915,657,368 - 15,657,474 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1915,657,368 - 15,657,474 (+)EnsemblGRCm39 Ensembl
GRCm381915,680,004 - 15,680,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1915,680,004 - 15,680,110 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24319
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391915,657,368 - 15,657,474 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1915,657,368 - 15,657,474 (+)EnsemblGRCm39 Ensembl
GRCm381915,680,004 - 15,680,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1915,680,004 - 15,680,110 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19ANCBI
RNU6-446P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381762,683,905 - 62,684,010 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1762,683,905 - 62,684,010 (+)EnsemblGRCh38hg38GRCh38
GRCh371760,761,266 - 60,761,371 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q23.2NCBI
CHM1_11760,825,578 - 60,825,683 (+)NCBICHM1_1
T2T-CHM13v2.01763,553,827 - 63,553,932 (+)NCBIT2T-CHM13v2.0
Rnu6-446
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8253,483,441 - 53,483,551 (+)NCBIGRCr8
mRatBN7.2251,750,739 - 51,750,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl251,750,739 - 51,750,849 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl252,529,241 - 52,529,351 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q16NCBI

Variants

.
Variants in Gm24319
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENSMUST00000083389
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC151575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000083389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1915,657,368 - 15,657,474 (+)Ensembl
GRCm38.p6 Ensembl1915,680,004 - 15,680,110 (+)Ensembl
RefSeq Acc Id: XR_004940286
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391915,657,368 - 15,657,474 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094850 Ensembl
  ENSMUSG00000118757 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083389 ENTREZGENE
MGD MGI:5454096 ENTREZGENE
NCBI Gene Gm24319 ENTREZGENE
PhenoGen Gm24319 PhenoGen