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Gene: Gm30082 (predicted gene, 30082) Mus musculus

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Symbol:

Gm30082

Name:

predicted gene, 30082

RGD ID:

9604526

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	4,251,707 - 4,253,239 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	4,246,330 - 4,253,535 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	4,201,708 - 4,203,240 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	4,201,779 - 4,203,240 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	19	4,072,847 - 4,074,378 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:18799693

Genomics

Variants

Variants in Gm30082
49 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142302	Nstr1_m	nerve sheath tumor resistance QTL 1 (mouse)			Not determined		19	1	22371338	Mouse
1301271	Datd_m	dopamine transporter density (mouse)			Not determined		19	1	32340234	Mouse
1300923	Bits4_m	bitterness sensitivity 4 (mouse)			Not determined		19	3323216	37323348	Mouse
4142406	Pbctlp1_m	peripheral blood cytotoxic T lymphocyte percentage 1 (mouse)			Not determined			1	32875174	Mouse
1300776	Lfp3_m	long free running period 3 (mouse)			Not determined		19	1	20328703	Mouse
1300904	Chab5_m	cholesterol absorption 5 (mouse)			Not determined		19	1653764	35653927	Mouse
26884385	Skwq14_m	skull length QTL 14, 16 week (mouse)					19	3250000	35877400	Mouse
1301800	Faq10_m	fluctuating asymmetry QTL 10 (mouse)			Not determined		19	3323216	37323348	Mouse
1300591	Pas3_m	pulmonary adenoma susceptibility 3 (mouse)			Not determined		19	3323216	37323348	Mouse
1302126	Skull26_m	skull morphology 26 (mouse)			Not determined		19	3323216	37323348	Mouse
4142161	Drinksac2_m	drink saccharin 2 (mouse)			Not determined			1	20695286	Mouse
1357819	Tgct2_m	testicular germ cell tumor 2 (mouse)			Not determined		19	3328551	20539663	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_004940238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_388288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_388289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC140073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000236928

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,660 - 4,253,247 (+)	Ensembl
GRCm38.p6 Ensembl	19	4,201,779 - 4,203,240 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000242748

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,767 - 4,253,242 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000242756

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,735 - 4,253,242 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000242764

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,796 - 4,253,242 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000243797

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,731 - 4,253,245 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000244435

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,731 - 4,253,244 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000341194

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,246,330 - 4,253,242 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000341195

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,321 - 4,253,242 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000341196

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,735 - 4,253,535 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000341197

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,710 - 4,253,242 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000341198

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,752 - 4,253,237 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000341199

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,802 - 4,253,242 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000341200

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	4,251,806 - 4,253,215 (+)	Ensembl

RefSeq Acc Id:

XR_004940238

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	4,251,707 - 4,253,239 (+)	NCBI

Sequence:

show sequence

CCTAAGCTCGGTGTCACGTGATCTAGTCGGTTCATTGGGTGTGGCCCGGGTCACGTGACTGCGG
AGGGCTTGCTCCTGTGTCCTTCCTCAGGATCCTTCACTGACCTTCGTAAATACATGGAAAGATG
AGAAGGTTCTGGGACAGAAAAGGGTGGAAGGATGGACTTGTCAGAAGGAGGGGCAGAAGCAGAA
GCACAATGGGGGTAGGCGAATATGGGTGAATGGGGTGTCCCGAGCCTTGTGCGGTAAGGGGTGG
GGAGGCAGAGCTGAAGGGATGAACTGGGAAGCCCTGGGAAGGCTTAAGTACTACGCGGGGTTTG
GTTTATGTACATTTTACCAATTACCCAGACAGTGTGGAAGGATGAAGATTTTCAGCTGGGACGC
ATTCACCTTGCTCTGGGAGGCTCCTCTCCCTCTCCAAGTGCTTCTTTCCTAGAGCCTCCGGGGA
GGAGGCGGCTTTCCCTTTCCACATCCAAGGCAAGCTGCATACAACGCAGAGGTGTCCAGTTCTC
TGTTAGACTGGGAGTTAGGGGATTACCAGCATCCTCTCCTCCTCACTTGCTCACGTCTTCGGTG
GATTCTGGCTGCTTCATTTCCCAAACAGATGGCAAAGTGGCCCTCCTTCTGTCTCCACTGTCCT
CCTTTCACTGTCCAGACACAGTCCTCAGTGACCCGCCCCCCCCCCCCCCCCCGGTGGGCTTAAC
TCTCCTGGCAAAGTCCAGTCTCTTGATCAGGAACTTTGAGGATCCAGGTCCCACAGAGGTCTTC
ACTGTCTCCTACCCCACATGATCACCTATCTCCATAGCCCTGCCAGGCTCTTAGCGGCCACTCT
GGCTGCTTCCAAGGCTGTAGCCTGCTTCTCCCATGCTGACTTCTCTTCCTGGGCTCAACAGCAA
AGGTTCCCTCAGCAGAGAAAACCCTAGGCTTTGAGCCATGGTGTGTCCCAGTTTCCTCTGTGTT
TAATATTTGTGCTTCCTGCTGTTGTGGCTGCTGCATGTGGGCAGGAACTGCTTCTGTTTTGTTT
ATTGCTCTGTGTACTTCCCACCCAGCCTAGGATCAATAAATAGGTGTTGAGCCAGGTATGGTGG
CTCATGCCTATAATCCTA

hide sequence

RefSeq Acc Id:

XR_388288

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	4,251,707 - 4,253,239 (+)	NCBI
GRCm38	19	4,201,708 - 4,203,240 (+)	NCBI

Sequence:

show sequence

CCTAAGCTCGGTGTCACGTGATCTAGTCGGTTCATTGGGTGTGGCCCGGGTCACGTGACTGCGG
AGGGCTTGCTCCTGTGTCCTTCCTCAGGATCCTTCACTGACCTTCGTAAATACATGGAAAGATG
AGAAGGTTCTGGGACAGAAAAGGGTGGAAGGATGGACTTGTCAGAAGGAGGGGCAGAAGCAGAA
GCACAATGGGGGCTCCTCTCCCTCTCCAAGTGCTTCTTTCCTAGAGCCTCCGGGGAGGAGGCGG
CTTTCCCTTTCCACATCCAAGGCAAGCTGCATACAACGCAGAGGTGTCCAGTTCTCTGTTAGAC
TGGGAGTTAGGGGATTACCAGCATCCTCTCCTCCTCACTTGCTCACGTCTTCGGTGGATTCTGG
CTGCTTCATTTCCCAAACAGATGGCAAAGTGGCCCTCCTTCTGTCTCCACTGTCCTCCTTTCAC
TGTCCAGACACAGTCCTCAGTGACCCGCCCCCCCCCCCCCCCCCGGTGGGCTTAACTCTCCTGG
CAAAGTCCAGTCTCTTGATCAGGAACTTTGAGGATCCAGGTCCCACAGAGGTCTTCACTGTCTC
CTACCCCACATGATCACCTATCTCCATAGCCCTGCCAGGCTCTTAGCGGCCACTCTGGCTGCTT
CCAAGGCTGTAGCCTGCTTCTCCCATGCTGACTTCTCTTCCTGGGCTCAACAGCAAAGGTTCCC
TCAGCAGAGAAAACCCTAGGCTTTGAGCCATGGTGTGTCCCAGTTTCCTCTGTGTTTAATATTT
GTGCTTCCTGCTGTTGTGGCTGCTGCATGTGGGCAGGAACTGCTTCTGTTTTGTTTATTGCTCT
GTGTACTTCCCACCCAGCCTAGGATCAATAAATAGGTGTTGAGCCAGGTATGGTGGCTCATGCC
TATAATCCTA

hide sequence

RefSeq Acc Id:

XR_388289

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	4,251,707 - 4,253,239 (+)	NCBI
GRCm38	19	4,201,708 - 4,203,240 (+)	NCBI

Sequence:

show sequence

CCTAAGCTCGGTGTCACGTGATCTAGTCGGTTCATTGGGTGTGGCCCGGGTCACGTGACTGCGG
AGGGCTTGCTCCTGTGTCCTTCCTCAGGATCCTTCACTGACCTTCGTAAATACATGGAAAGATG
AGAAGGTTCTGGGACAGAAAAGGGTGGAAGGATGGACTTGTCAGAAGGAGGGGCAGAAGCAGAA
GCACAATGGGGACAGTGTGGAAGGATGAAGATTTTCAGCTGGGACGCATTCACCTTGCTCTGGG
AGGCTCCTCTCCCTCTCCAAGTGCTTCTTTCCTAGAGCCTCCGGGGAGGAGGCGGCTTTCCCTT
TCCACATCCAAGGCAAGCTGCATACAACGCAGAGGTGTCCAGTTCTCTGTTAGACTGGGAGTTA
GGGGATTACCAGCATCCTCTCCTCCTCACTTGCTCACGTCTTCGGTGGATTCTGGCTGCTTCAT
TTCCCAAACAGATGGCAAAGTGGCCCTCCTTCTGTCTCCACTGTCCTCCTTTCACTGTCCAGAC
ACAGTCCTCAGTGACCCGCCCCCCCCCCCCCCCCCGGTGGGCTTAACTCTCCTGGCAAAGTCCA
GTCTCTTGATCAGGAACTTTGAGGATCCAGGTCCCACAGAGGTCTTCACTGTCTCCTACCCCAC
ATGATCACCTATCTCCATAGCCCTGCCAGGCTCTTAGCGGCCACTCTGGCTGCTTCCAAGGCTG
TAGCCTGCTTCTCCCATGCTGACTTCTCTTCCTGGGCTCAACAGCAAAGGTTCCCTCAGCAGAG
AAAACCCTAGGCTTTGAGCCATGGTGTGTCCCAGTTTCCTCTGTGTTTAATATTTGTGCTTCCT
GCTGTTGTGGCTGCTGCATGTGGGCAGGAACTGCTTCTGTTTTGTTTATTGCTCTGTGTACTTC
CCACCCAGCCTAGGATCAATAAATAGGTGTTGAGCCAGGTATGGTGGCTCATGCCTATAATCCT
A

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000118245	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000236928	ENTREZGENE
	ENSMUST00000341197	ENTREZGENE
MGD	MGI:5589241	ENTREZGENE
NCBI Gene	Gm30082	ENTREZGENE
PhenoGen	Gm30082	PhenoGen
RNAcentral	URS00025E90F9	RNACentral
	URS00025ED2E9	RNACentral
	URS00025EFD0D	RNACentral
	URS00025F1281	RNACentral
	URS00025F2441	RNACentral
	URS00025F4205	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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