Banf1 (BAF nuclear assembly factor 1) - Rat Genome Database

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Gene: Banf1 (BAF nuclear assembly factor 1) Mus musculus
Analyze
Symbol: Banf1
Name: BAF nuclear assembly factor 1
RGD ID: 732240
MGI Page MGI
Description: Enables DNA binding activity. Acts upstream of or within DNA integration. Predicted to be located in chromatin; cytosol; and nucleoplasm. Predicted to be active in condensed chromosome and nucleus. Human ortholog(s) of this gene implicated in Nestor-Guillermo progeria syndrome. Orthologous to human BANF1 (barrier to autointegration nuclear assembly factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Baf; barrier to autointegration factor 1; barrier-to-autointegration factor; Bcr; Bcrp1; breakpoint cluster region protein 1; C78287; L2bp1/Baf; LAP2 binding protein 1; LAP2-binding protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,414,661 - 5,416,904 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,414,666 - 5,417,196 (-)EnsemblGRCm39 Ensembl
GRCm38195,364,633 - 5,366,876 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,364,638 - 5,367,168 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,364,640 - 5,366,645 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,364,640 - 5,366,645 (-)NCBIMGSCv36mm8
Celera195,236,965 - 5,238,970 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (EXP)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
DDE  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diuron  (ISO)
doxorubicin  (ISO)
Evodiamine  (EXP)
folic acid  (EXP)
folpet  (EXP)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
nitrates  (EXP)
oxaliplatin  (ISO)
ozone  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
pyrimidifen  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
tamoxifen  (EXP)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
tungsten  (EXP)
tunicamycin  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO,ISS)
condensed chromosome  (IBA,IEA,ISO)
cytoplasm  (ISO)
cytosol  (IEA,ISO)
nuclear envelope  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. A previously unidentified host protein protects retroviral DNA from autointegration. Lee MS and Craigie R, Proc Natl Acad Sci U S A 1998 Feb 17;95(4):1528-33.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Barrier to autointegration factor 1, procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3, and splicing factor 3b subunit 4 as early-stage cancer decision markers and drivers of hepatocellular carcinoma. Shen Q, etal., Hepatology. 2018 Apr;67(4):1360-1377. doi: 10.1002/hep.29606. Epub 2018 Feb 20.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10393804   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11591818   PMID:12215455   PMID:12477932   PMID:12904583   PMID:14523012   PMID:14610273  
PMID:14681185   PMID:15489334   PMID:15510219   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17062627   PMID:17967808   PMID:18799693   PMID:19567673   PMID:21267068   PMID:21750191  
PMID:21873635   PMID:22544055   PMID:24945635   PMID:30196744   PMID:30418981   PMID:30595499   PMID:31147383   PMID:32098917   PMID:32156810   PMID:32325033   PMID:37838622   PMID:38355793  


Genomics

Comparative Map Data
Banf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,414,661 - 5,416,904 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,414,666 - 5,417,196 (-)EnsemblGRCm39 Ensembl
GRCm38195,364,633 - 5,366,876 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,364,638 - 5,367,168 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,364,640 - 5,366,645 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,364,640 - 5,366,645 (-)NCBIMGSCv36mm8
Celera195,236,965 - 5,238,970 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.31NCBI
BANF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,002,079 - 66,004,149 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,002,228 - 66,004,149 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,769,550 - 65,771,620 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,526,126 - 65,528,193 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,526,125 - 65,528,192NCBI
Celera1163,093,965 - 63,096,038 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1162,095,646 - 62,097,706 (+)NCBIHuRef
CHM1_11165,653,680 - 65,655,740 (+)NCBICHM1_1
T2T-CHM13v2.01165,996,213 - 65,998,283 (+)NCBIT2T-CHM13v2.0
Banf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,101,523 - 212,103,568 (-)NCBIGRCr8
mRatBN7.21202,672,170 - 202,674,215 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,671,305 - 202,674,188 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,024,837 - 211,026,865 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,117,592 - 218,119,621 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,808,641 - 210,810,670 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,744,195 - 220,746,224 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,744,195 - 220,746,224 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,673,526 - 227,675,555 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,008,344 - 208,010,342 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,161,797 - 208,163,795 (-)NCBI
Celera1200,207,485 - 200,209,514 (-)NCBICelera
Cytogenetic Map1q43NCBI
Banf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,337,038 - 19,338,824 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,337,038 - 19,338,824 (-)NCBIChiLan1.0ChiLan1.0
BANF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,234,827 - 67,236,742 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,277,818 - 68,279,589 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,366,480 - 61,368,547 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,693,447 - 64,695,509 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,693,447 - 64,695,509 (+)Ensemblpanpan1.1panPan2
BANF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,269,817 - 51,271,484 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,269,815 - 51,271,690 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,878,361 - 49,880,170 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,307,852 - 52,309,661 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,307,853 - 52,309,450 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,408,074 - 51,409,874 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,982,366 - 50,984,175 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,772,120 - 51,773,921 (-)NCBIUU_Cfam_GSD_1.0
Banf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,110,844 - 7,112,660 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,553,193 - 3,555,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,553,190 - 3,555,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BANF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,333,453 - 6,334,839 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,333,451 - 6,335,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,437,148 - 5,438,838 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BANF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,254,186 - 8,255,571 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,253,884 - 8,255,572 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,538,880 - 105,540,568 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Banf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,434,955 - 20,436,640 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,435,143 - 20,436,830 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Banf1
99 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:407
Count of miRNA genes:170
Interacting mature miRNAs:186
Transcripts:ENSMUST00000025762, ENSMUST00000170010
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950648178957825Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse

Markers in Region
RH126339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38195,364,664 - 5,364,897UniSTSGRCm38
MGSCv37195,364,664 - 5,364,897UniSTSGRCm37
Celera195,236,989 - 5,237,222UniSTS
Cytogenetic Map19AUniSTS
Whitehead/MRC_RH1949.56UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001038231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB025349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF037080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE863097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY111854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK780850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000025762   ⟹   ENSMUSP00000025762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,414,666 - 5,417,196 (-)Ensembl
GRCm38.p6 Ensembl195,364,638 - 5,367,168 (-)Ensembl
Ensembl Acc Id: ENSMUST00000170010   ⟹   ENSMUSP00000126202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,414,669 - 5,416,391 (-)Ensembl
GRCm38.p6 Ensembl195,364,641 - 5,366,363 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237167   ⟹   ENSMUSP00000158117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,414,767 - 5,416,634 (-)Ensembl
GRCm38.p6 Ensembl195,364,739 - 5,366,606 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,414,668 - 5,416,819 (-)Ensembl
GRCm38.p6 Ensembl195,364,640 - 5,366,791 (-)Ensembl
RefSeq Acc Id: NM_001038231   ⟹   NP_001033320
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39195,414,661 - 5,416,391 (-)NCBI
GRCm38195,364,633 - 5,366,363 (-)NCBI
MGSCv37195,364,640 - 5,366,645 (-)RGD
Celera195,236,958 - 5,239,201 (-)NCBI
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286608   ⟹   NP_001273537
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39195,414,661 - 5,416,904 (-)NCBI
GRCm38195,364,633 - 5,366,876 (-)NCBI
Celera195,236,958 - 5,239,201 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011793   ⟹   NP_035923
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39195,414,661 - 5,416,904 (-)NCBI
GRCm38195,364,633 - 5,366,876 (-)NCBI
MGSCv37195,364,640 - 5,366,645 (-)RGD
Celera195,236,958 - 5,239,201 (-)NCBI
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104482
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39195,414,661 - 5,416,904 (-)NCBI
GRCm38195,364,633 - 5,366,876 (-)NCBI
Celera195,236,958 - 5,239,201 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035923   ⟸   NM_011793
- UniProtKB: Q542E6 (UniProtKB/Swiss-Prot),   O54962 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001033320   ⟸   NM_001038231
- UniProtKB: Q542E6 (UniProtKB/Swiss-Prot),   O54962 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273537   ⟸   NM_001286608
- UniProtKB: Q542E6 (UniProtKB/Swiss-Prot),   O54962 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000126202   ⟸   ENSMUST00000170010
Ensembl Acc Id: ENSMUSP00000158117   ⟸   ENSMUST00000237167
Ensembl Acc Id: ENSMUSP00000025762   ⟸   ENSMUST00000025762
Protein Domains
HhH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54962-F1-model_v2 AlphaFold O54962 1-89 view protein structure

Promoters
RGD ID:6829990
Promoter ID:MM_KWN:26070
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001038231,   NM_011793,   NM_027236
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36195,365,556 - 5,367,162 (+)MPROMDB
RGD ID:13678504
Promoter ID:EPDNEW_M23401
Type:initiation region
Name:Banf1_1
Description:Mus musculus barrier to autointegration factor 1 , transcriptvariant 4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23403  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38195,366,644 - 5,366,704EPDNEW
RGD ID:13678508
Promoter ID:EPDNEW_M23403
Type:multiple initiation site
Name:Banf1_2
Description:Mus musculus barrier to autointegration factor 1 , transcriptvariant 4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23401  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38195,366,964 - 5,367,024EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1346330 AgrOrtholog
Ensembl Genes ENSMUSG00000024844 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000025762 ENTREZGENE
  ENSMUST00000025762.16 UniProtKB/Swiss-Prot
  ENSMUST00000170010 ENTREZGENE
  ENSMUST00000170010.3 UniProtKB/Swiss-Prot
  ENSMUST00000237167 ENTREZGENE
  ENSMUST00000237167.2 UniProtKB/Swiss-Prot
  ENSMUST00000237704 ENTREZGENE
Gene3D-CATH 1.10.150.40 UniProtKB/Swiss-Prot
InterPro BAF UniProtKB/Swiss-Prot
  BAF_prot UniProtKB/Swiss-Prot
  BAF_sf UniProtKB/Swiss-Prot
KEGG Report mmu:23825 UniProtKB/Swiss-Prot
MGD MGI:1346330 ENTREZGENE
NCBI Gene 23825 ENTREZGENE
PANTHER BARRIER TO AUTOINTEGRATION FACTOR 2 UniProtKB/Swiss-Prot
  BARRIER-TO-AUTOINTEGRATION FACTOR UniProtKB/Swiss-Prot
Pfam BAF UniProtKB/Swiss-Prot
PhenoGen Banf1 PhenoGen
SMART BAF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47798 UniProtKB/Swiss-Prot
UniProt BAF_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q542E6 ENTREZGENE
UniProt Secondary Q542E6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-27 Banf1  BAF nuclear assembly factor 1  Banf1  barrier to autointegration factor 1  Symbol and/or name change 5135510 APPROVED