Gm22680 (predicted gene, 22680) - Rat Genome Database

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Gene: Gm22680 (predicted gene, 22680) Mus musculus
Analyze
Symbol: Gm22680
Name: predicted gene, 22680
RGD ID: 15554315
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC115489086; small nucleolar RNA SNORD30
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 Ensembl - Mouse Genome Assembly GRCm39 Ensembl
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,702,705 - 8,702,773 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,702,705 - 8,702,773 (+)EnsemblGRCm39 Ensembl
GRCm38198,725,341 - 8,725,409 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,725,341 - 8,725,409 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19ANCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22680
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,702,705 - 8,702,773 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,702,705 - 8,702,773 (+)EnsemblGRCm39 Ensembl
GRCm38198,725,341 - 8,725,409 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,725,341 - 8,725,409 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map19ANCBI
SNORD30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X114,017,033 - 114,017,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX114,017,033 - 114,017,102 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic MapXq23NCBI
T2T-CHM13v2.0X112,469,303 - 112,469,372 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm22680
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:112
Interacting mature miRNAs:116
Transcripts:ENSMUST00000083848
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC025794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl198,702,705 - 8,702,773 (+)Ensembl
GRCm38.p6 Ensembl198,725,341 - 8,725,409 (+)Ensembl
RefSeq Acc Id: XR_004940306
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39198,702,705 - 8,702,773 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065782 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083848 ENTREZGENE
MGD MGI:5452457 ENTREZGENE
NCBI Gene LOC115489086 ENTREZGENE
PhenoGen Gm22680 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-02 Gm22680  predicted gene, 22680  LOC115489086  small nucleolar RNA SNORD30  Symbol and/or name change 19259462 PROVISIONAL
2020-06-30 LOC115489086  small nucleolar RNA SNORD30  Gm22680  predicted gene, 22680  Symbol and/or name change 5135510 APPROVED
2020-06-25 Gm22680  predicted gene, 22680  LOC115489086  small nucleolar RNA SNORD30  Symbol and/or name change 19259462 PROVISIONAL
2020-06-19 LOC115489086  small nucleolar RNA SNORD30  Gm22680  predicted gene, 22680  Symbol and/or name change 5135510 APPROVED