Psat1 (phosphoserine aminotransferase 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Psat1 (phosphoserine aminotransferase 1) Mus musculus
Analyze
Symbol: Psat1
Name: phosphoserine aminotransferase 1
RGD ID: 1550459
MGI Page MGI
Description: Predicted to enable O-phospho-L-serine:2-oxoglutarate aminotransferase activity; identical protein binding activity; and pyridoxal phosphate binding activity. Predicted to be involved in L-serine biosynthetic process. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in Neu-Laxova syndrome 2 and PSAT deficiency. Orthologous to human PSAT1 (phosphoserine aminotransferase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL024078; AL024083; AU040266; D8Ertd814; D8Ertd814e; E; endometrial progesterone-induced protein; EPIP; phosphohydroxythreonine aminotransferase; phosphoserine aminotransferase; PSA; Psat
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm12611  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391915,882,487 - 15,902,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1915,882,042 - 15,924,701 (-)EnsemblGRCm39 Ensembl
GRCm381915,905,123 - 15,925,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1915,904,678 - 15,947,337 (-)EnsemblGRCm38mm10GRCm38
MGSCv371915,979,622 - 15,999,515 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361915,972,151 - 15,992,044 (-)NCBIMGSCv36mm8
Celera1916,558,064 - 16,577,964 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map1910.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
1H-pyrazole  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
7,12-dimethyltetraphene  (EXP)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (EXP,ISO)
aldrin  (EXP)
all-trans-retinoic acid  (EXP,ISO)
alpha-hexachlorocyclohexane  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
amphotericin B  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP)
antimycin A  (ISO)
arachidonic acid  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
azoxystrobin  (ISO)
benzethonium chloride  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcidiol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chloroacetaldehyde  (ISO)
chloroethene  (EXP)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
cholesterol  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
clofibric acid  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
diclofenac  (ISO)
Didecyldimethylammonium  (ISO)
dimethyl-(phenylmethyl)-[2-[2-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]ethoxy]ethyl]ammonium  (ISO)
dioxygen  (ISO)
diquat  (EXP)
disodium selenite  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP,ISO)
fenpyroximate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
gold atom  (EXP)
gold(0)  (EXP)
hydrazine  (EXP)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lamivudine  (ISO)
Licarin A  (EXP)
lipopolysaccharide  (ISO)
lucanthone  (ISO)
menadione  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monosodium L-glutamate  (EXP)
Muraglitazar  (ISO)
N(4)-hydroxycytidine  (EXP)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (ISO)
neomycin  (EXP)
nickel dichloride  (ISO)
nitrofen  (ISO)
Nutlin-3  (ISO)
orotic acid  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
PhIP  (ISO)
phorone  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propan-2-ol  (ISO)
propiconazole  (EXP)
prostaglandin A1  (EXP)
prothioconazole  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tebufenpyrad  (ISO)
Tesaglitazar  (ISO)
testosterone  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
thifluzamide  (ISO)
thiram  (ISO)
topotecan  (ISO)
triacsin C  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (EXP,ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
trovafloxacin  (EXP)
tungsten  (EXP)
Tungsten carbide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
cytosol  (IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Large-scale screen for genes involved in gonad development. Wertz K and Herrmann BG, Mech Dev 2000 Nov;98(1-2):51-70.
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10885754   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14681479  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18228065   PMID:19690063   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23870131   PMID:24154525   PMID:24457600  
PMID:25503742   PMID:26651292   PMID:27163549   PMID:27476977   PMID:28185240   PMID:29799838   PMID:30713523   PMID:30973865   PMID:32325033   PMID:32554809   PMID:32694609   PMID:35228694  
PMID:35237793   PMID:36114006   PMID:36293380   PMID:37812701   PMID:38060382   PMID:38355793   PMID:38453480   PMID:38822427  


Genomics

Comparative Map Data
Psat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391915,882,487 - 15,902,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1915,882,042 - 15,924,701 (-)EnsemblGRCm39 Ensembl
GRCm381915,905,123 - 15,925,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1915,904,678 - 15,947,337 (-)EnsemblGRCm38mm10GRCm38
MGSCv371915,979,622 - 15,999,515 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361915,972,151 - 15,992,044 (-)NCBIMGSCv36mm8
Celera1916,558,064 - 16,577,964 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map1910.86NCBI
PSAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38978,297,125 - 78,330,093 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl978,297,125 - 78,330,093 (+)EnsemblGRCh38hg38GRCh38
GRCh37980,912,041 - 80,945,009 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36980,101,879 - 80,134,829 (+)NCBINCBI36Build 36hg18NCBI36
Celera951,489,329 - 51,522,284 (+)NCBICelera
Cytogenetic Map9q21.2NCBI
HuRef950,743,076 - 50,776,006 (+)NCBIHuRef
CHM1_1981,059,641 - 81,092,550 (+)NCBICHM1_1
T2T-CHM13v2.0990,454,269 - 90,487,311 (+)NCBIT2T-CHM13v2.0
Psat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,623,553 - 222,646,187 (-)NCBIGRCr8
mRatBN7.21213,196,709 - 213,218,564 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,196,709 - 213,218,682 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,530,997 - 221,553,207 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,460,604 - 228,482,458 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,285,550 - 221,307,762 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01233,124,089 - 233,145,941 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1233,124,092 - 233,145,941 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,241,194 - 240,263,046 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,268,419 - 219,290,273 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11219,432,443 - 219,454,296 (-)NCBI
Celera1210,534,954 - 210,556,799 (-)NCBICelera
Cytogenetic Map1q43NCBI
Psat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555121,132,390 - 1,155,412 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555121,132,452 - 1,155,405 (-)NCBIChiLan1.0ChiLan1.0
PSAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21177,456,741 - 77,490,075 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1977,463,258 - 77,496,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0946,517,253 - 46,550,018 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1977,147,493 - 77,180,439 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl977,147,493 - 77,180,439 (+)Ensemblpanpan1.1panPan2
PSAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1180,376,469 - 80,408,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl180,377,115 - 80,408,162 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha180,840,433 - 80,872,053 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0180,788,941 - 80,820,578 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl180,788,930 - 80,821,265 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1180,574,839 - 80,606,469 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0180,296,037 - 80,327,710 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0181,026,381 - 81,058,002 (-)NCBIUU_Cfam_GSD_1.0
Psat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947127,570,762 - 127,601,270 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366324,391,459 - 4,423,264 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366324,392,165 - 4,422,670 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1231,142,625 - 231,172,360 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11231,142,673 - 231,172,364 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21257,809,911 - 257,835,735 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11289,223,463 - 89,256,017 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1289,223,526 - 89,256,022 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603877,564,510 - 77,596,213 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248115,727,685 - 5,751,607 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248115,727,912 - 5,751,921 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Psat1
796 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1382
Count of miRNA genes:620
Interacting mature miRNAs:738
Transcripts:ENSMUST00000025542, ENSMUST00000159264, ENSMUST00000160170, ENSMUST00000161707, ENSMUST00000162053, ENSMUST00000162233, ENSMUST00000162416
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
12801464Rta2_mretinal aging 2 (mouse)141230287425302874Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse

Markers in Region
AU040266  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381915,905,360 - 15,905,455UniSTSGRCm38
MGSCv371915,979,850 - 15,979,945UniSTSGRCm37
Celera1916,558,292 - 16,558,387UniSTS
Cytogenetic Map19AUniSTS
cM Map1932.5UniSTS
Whitehead/MRC_RH19172.49UniSTS
RH125469  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381915,905,887 - 15,906,012UniSTSGRCm38
MGSCv371915,980,377 - 15,980,502UniSTSGRCm37
Celera1916,558,819 - 16,558,944UniSTS
Celera834,008,989 - 34,009,115UniSTS
Cytogenetic Map19AUniSTS
cM Map1932.5UniSTS
D8Ertd814e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381915,905,208 - 15,905,452UniSTSGRCm38
MGSCv371915,979,698 - 15,979,942UniSTSGRCm37
Celera1916,558,140 - 16,558,384UniSTS
Cytogenetic Map19AUniSTS
cM Map1932.5UniSTS
cM Map832.5UniSTS
cM Map8 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001205339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF259674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV166058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000025542   ⟹   ENSMUSP00000025542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1915,882,042 - 15,902,423 (-)Ensembl
GRCm38.p6 Ensembl1915,904,678 - 15,925,059 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1915,894,203 - 15,895,701 (-)Ensembl
GRCm38.p6 Ensembl1915,916,839 - 15,918,337 (-)Ensembl
Ensembl Acc Id: ENSMUST00000160170
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1915,895,767 - 15,898,773 (-)Ensembl
GRCm38.p6 Ensembl1915,918,403 - 15,921,409 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1915,882,494 - 15,887,076 (-)Ensembl
GRCm38.p6 Ensembl1915,905,130 - 15,909,712 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162053   ⟹   ENSMUSP00000125340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1915,882,491 - 15,901,986 (-)Ensembl
GRCm38.p6 Ensembl1915,905,127 - 15,924,622 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1915,897,864 - 15,902,294 (-)Ensembl
GRCm38.p6 Ensembl1915,920,500 - 15,924,930 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162416   ⟹   ENSMUSP00000125593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1915,892,373 - 15,924,701 (-)Ensembl
GRCm38.p6 Ensembl1915,915,009 - 15,947,337 (-)Ensembl
RefSeq Acc Id: NM_001205339   ⟹   NP_001192268
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391915,882,487 - 15,901,986 (-)NCBI
GRCm381915,905,123 - 15,924,622 (-)NCBI
Celera1916,558,055 - 16,577,998 (-)ENTREZGENE
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_177420   ⟹   NP_803155
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391915,882,487 - 15,902,423 (-)NCBI
GRCm381915,905,123 - 15,925,059 (-)ENTREZGENE
MGSCv371915,979,622 - 15,999,515 (-)RGD
Celera1916,558,055 - 16,577,998 (-)ENTREZGENE
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004940109
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391915,882,490 - 15,902,418 (-)NCBI
Sequence:
RefSeq Acc Id: NP_803155   ⟸   NM_177420
- Peptide Label: isoform 1
- UniProtKB: Q99K85 (UniProtKB/Swiss-Prot),   Q543K5 (UniProtKB/TrEMBL),   Q3ULZ3 (UniProtKB/TrEMBL),   Q8BTJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001192268   ⟸   NM_001205339
- Peptide Label: isoform 2
- UniProtKB: Q3U6K9 (UniProtKB/TrEMBL),   Q3ULZ3 (UniProtKB/TrEMBL),   Q8BTJ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000125593   ⟸   ENSMUST00000162416
Ensembl Acc Id: ENSMUSP00000025542   ⟸   ENSMUST00000025542
Ensembl Acc Id: ENSMUSP00000125340   ⟸   ENSMUST00000162053
Protein Domains
Aminotransferase class V

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99K85-F1-model_v2 AlphaFold Q99K85 1-370 view protein structure

Promoters
RGD ID:13679038
Promoter ID:EPDNEW_M23668
Type:single initiation site
Name:Psat1_2
Description:Mus musculus phosphoserine aminotransferase 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23669  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381915,924,562 - 15,924,622EPDNEW
RGD ID:13679040
Promoter ID:EPDNEW_M23669
Type:initiation region
Name:Psat1_1
Description:Mus musculus phosphoserine aminotransferase 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23668  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381915,924,949 - 15,925,009EPDNEW
RGD ID:6830334
Promoter ID:MM_KWN:26568
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:OTTMUST00000076505
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361915,984,451 - 15,984,951 (-)MPROMDB
RGD ID:6830340
Promoter ID:MM_KWN:26569
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_4Hour
Transcripts:OTTMUST00000076508
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361915,992,366 - 15,992,866 (-)MPROMDB
RGD ID:6830337
Promoter ID:MM_KWN:26570
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:OTTMUST00000076507
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361915,995,501 - 15,996,852 (-)MPROMDB
RGD ID:6830336
Promoter ID:MM_KWN:26571
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000076503,   OTTMUST00000076504,   OTTMUST00000076506
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361915,998,901 - 16,000,177 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2183441 AgrOrtholog
Ensembl Genes ENSMUSG00000024640 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025542 ENTREZGENE
  ENSMUST00000025542.10 UniProtKB/Swiss-Prot
  ENSMUST00000162053 ENTREZGENE
  ENSMUST00000162053.8 UniProtKB/TrEMBL
  ENSMUST00000162416.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aminotrans_V_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotrans_V_PyrdxlP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pser_aminoTfrase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_dom1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:107272 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2183441 ENTREZGENE
NCBI Gene 107272 ENTREZGENE
PANTHER PHOSPHOSERINE AMINOTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR43247 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aminotran_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Psat1 PhenoGen
PIRSF SerC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9Q6P1_MOUSE UniProtKB/TrEMBL
  Q3U6K9 ENTREZGENE, UniProtKB/TrEMBL
  Q3ULZ3 ENTREZGENE, UniProtKB/TrEMBL
  Q543K5 ENTREZGENE, UniProtKB/TrEMBL
  Q8BTJ1 ENTREZGENE, UniProtKB/TrEMBL
  Q99JU9_MOUSE UniProtKB/TrEMBL
  Q99K85 ENTREZGENE, UniProtKB/Swiss-Prot