Or5a1 (olfactory receptor family 5 subfamily A member 1) - Rat Genome Database

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Gene: Or5a1 (olfactory receptor family 5 subfamily A member 1) Mus musculus
Analyze
Symbol: Or5a1
Name: olfactory receptor family 5 subfamily A member 1
RGD ID: 1551302
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Is expressed in olfactory epithelium. Orthologous to human OR5A1 (olfactory receptor family 5 subfamily A member 1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2RE5P-2479601-2478648; MOR215; MOR215-3; olfactory receptor 76; Olfr76; V; V5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391912,097,085 - 12,098,038 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1912,095,360 - 12,100,567 (-)EnsemblGRCm39 Ensembl
GRCm381912,119,721 - 12,120,674 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1912,117,996 - 12,123,203 (-)EnsemblGRCm38mm10GRCm38
MGSCv371912,194,211 - 12,195,164 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361912,186,766 - 12,187,719 (-)NCBIMGSCv36mm8
Celera1912,817,230 - 12,818,183 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9733924   PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21267068   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or5a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391912,097,085 - 12,098,038 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1912,095,360 - 12,100,567 (-)EnsemblGRCm39 Ensembl
GRCm381912,119,721 - 12,120,674 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1912,117,996 - 12,123,203 (-)EnsemblGRCm38mm10GRCm38
MGSCv371912,194,211 - 12,195,164 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361912,186,766 - 12,187,719 (-)NCBIMGSCv36mm8
Celera1912,817,230 - 12,818,183 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.61NCBI
OR5A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,436,469 - 59,451,380 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,436,469 - 59,451,380 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,203,942 - 59,218,853 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,967,218 - 58,968,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 341158,967,217 - 58,968,165NCBI
Celera1156,571,922 - 56,572,869 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,558,395 - 55,559,342 (+)NCBIHuRef
CHM1_11159,076,391 - 59,077,338 (+)NCBICHM1_1
T2T-CHM13v2.01159,387,311 - 59,402,217 (+)NCBIT2T-CHM13v2.0
Or5a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81218,475,528 - 218,476,481 (-)NCBIGRCr8
mRatBN7.21209,050,800 - 209,051,753 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1209,048,306 - 209,056,709 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,425,457 - 217,426,410 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,403,654 - 224,404,607 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,179,888 - 217,180,841 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01228,557,640 - 228,558,593 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,557,640 - 228,558,593 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01235,620,906 - 235,621,859 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,975,497 - 214,976,450 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11215,133,926 - 215,134,880 (-)NCBI
Celera1206,516,850 - 206,517,803 (-)NCBICelera
Cytogenetic Map1q43NCBI
LOC102010505
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555113,947,526 - 3,953,543 (+)NCBIChiLan1.0ChiLan1.0
LOC100975391
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2960,566,897 - 60,583,445 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11161,609,196 - 61,625,736 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01154,667,035 - 54,670,021 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,119,285 - 58,120,228 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,119,285 - 58,120,228 (+)Ensemblpanpan1.1panPan2
OR5A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,290,621 - 37,291,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1837,290,621 - 37,291,580 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1836,939,989 - 36,940,948 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01837,931,132 - 37,932,091 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1837,931,132 - 37,932,091 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11837,520,951 - 37,521,910 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01837,097,372 - 37,098,331 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01837,727,048 - 37,728,007 (-)NCBIUU_Cfam_GSD_1.0
LOC101958503
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494713,146,727 - 13,147,674 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365813,260,549 - 3,261,496 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100513644
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1213,072,234 - 13,073,371 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,705,201 - 12,706,668 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234933
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,148,842 - 14,150,318 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,149,074 - 14,150,021 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038111,469,323 - 111,470,439 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101708083
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248641,305,610 - 1,375,319 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Or5a1
38 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:202
Count of miRNA genes:194
Interacting mature miRNAs:202
Transcripts:ENSMUST00000087822
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
38455997Cdtm2_mCD62L+ CD8 TM cells 2 (mouse)19997736419977364Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse

Markers in Region
d1rat294  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381912,122,269 - 12,122,442UniSTSGRCm38
MGSCv371912,196,759 - 12,196,932UniSTSGRCm37
Celera1912,819,778 - 12,819,951UniSTS
Cytogenetic Map19C1UniSTS
UniSTS:489409  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381912,119,721 - 12,120,674UniSTSGRCm38
MGSCv371912,194,211 - 12,195,164UniSTSGRCm37
Celera1912,817,230 - 12,818,183UniSTS
Cytogenetic Map19C1UniSTS
UniSTS:495624  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381912,119,653 - 12,120,700UniSTSGRCm38
MGSCv371912,194,143 - 12,195,190UniSTSGRCm37
Celera1912,817,162 - 12,818,209UniSTS
Cytogenetic Map19C1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000087822   ⟹   ENSMUSP00000085124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1912,097,017 - 12,098,064 (-)Ensembl
GRCm38.p6 Ensembl1912,119,653 - 12,120,700 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213471   ⟹   ENSMUSP00000154269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1912,095,360 - 12,100,560 (-)Ensembl
GRCm38.p6 Ensembl1912,117,996 - 12,123,196 (-)Ensembl
RefSeq Acc Id: ENSMUST00000214676   ⟹   ENSMUSP00000149014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1912,095,360 - 12,100,567 (-)Ensembl
GRCm38.p6 Ensembl1912,117,996 - 12,123,203 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1912,095,360 - 12,100,560 (-)Ensembl
GRCm38.p6 Ensembl1912,117,996 - 12,123,196 (-)Ensembl
RefSeq Acc Id: NM_146682   ⟹   NP_666893
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391912,097,085 - 12,098,038 (-)NCBI
GRCm381912,119,721 - 12,120,674 (-)ENTREZGENE
MGSCv371912,194,211 - 12,195,164 (-)RGD
Celera1912,817,230 - 12,818,183 (-)RGD
cM Map19 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666893 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI38073 (Get FASTA)   NCBI Sequence Viewer  
  AAI38074 (Get FASTA)   NCBI Sequence Viewer  
  AAL61076 (Get FASTA)   NCBI Sequence Viewer  
  AAP71805 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000085124
  ENSMUSP00000085124.3
  ENSMUSP00000149014.2
  ENSMUSP00000154269.2
RefSeq Acc Id: NP_666893   ⟸   NM_146682
- UniProtKB: Q8VFV2 (UniProtKB/TrEMBL),   A0A2I3BR00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000085124   ⟸   ENSMUST00000087822
RefSeq Acc Id: ENSMUSP00000154269   ⟸   ENSMUST00000213471
RefSeq Acc Id: ENSMUSP00000149014   ⟸   ENSMUST00000214676
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A2I3BR00-F1-model_v2 AlphaFold A0A2I3BR00 1-329 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2153205 AgrOrtholog
Ensembl Genes ENSMUSG00000067522 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000087822 ENTREZGENE
  ENSMUST00000087822.3 UniProtKB/TrEMBL
  ENSMUST00000213471.2 UniProtKB/TrEMBL
  ENSMUST00000214676.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258677 UniProtKB/TrEMBL
MGD MGI:2153205 ENTREZGENE
NCBI Gene 258677 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5a1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2I3BR00 ENTREZGENE, UniProtKB/TrEMBL
  Q8VFV2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or5a1  olfactory receptor family 5 subfamily A member 1  Olfr76  olfactory receptor 76  Symbol and/or name change 5135510 APPROVED