B4gat1 (beta-1,4-glucuronyltransferase 1)

Gene: B4gat1 (beta-1,4-glucuronyltransferase 1) Mus musculus

Analyze

Symbol:

B4gat1 (Ensembl: Gm50388)

Name:

beta-1,4-glucuronyltransferase 1 (Ensembl:predicted gene, 50388)

RGD ID:

1615764

MGI Page

MGI

Description:

Predicted to enable glucuronosyltransferase activity. Acts upstream of or within axon guidance and protein glycosylation. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and thymus. Used to study muscular dystrophy-dystroglycanopathy type B1. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A13. Orthologous to human B4GAT1 (beta-1,4-glucuronyltransferase 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1500032M01Rik; B3gnt1; B3gnt6; BETA3GNT1; I-beta-1,3-N-acetylglucosaminyltransferase; iGAT; iGNT; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase; poly-N-acetyllactosamine extension enzyme; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1; UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	B4GAT1 (beta-1,4-glucuronyltransferase 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	B4gat1 (beta-1,4-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	B4gat1 (beta-1,4-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	B4GAT1 (beta-1,4-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	B4GAT1 (beta-1,4-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	B4gat1 (beta-1,4-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	B4GAT1 (beta-1,4-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	B4GAT1 (beta-1,4-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	B4gat1 (beta-1,4-glucuronyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	B4gat1 (beta-1,4-glucuronyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	B4GAT1 (beta-1,4-glucuronyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	b4gat1 (beta-1,4-glucuronyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CG3253	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bgnt-1.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bgnt-1.2	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bgnt-1.3	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bgnt-1.5	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bgnt-1.6	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bgnt-1.7	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bgnt-1.8	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bgnt-1.4	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	b4gat1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,088,854 - 5,091,162 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	5,088,854 - 5,091,159 (+)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	19	5,088,919 - 5,099,940 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	5,038,826 - 5,041,134 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,038,826 - 5,041,131 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	19	5,038,891 - 5,049,912 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,038,826 - 5,041,134 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	5,038,853 - 5,041,130 (+)	NCBI		MGSCv36	mm8
Celera	19	4,907,924 - 4,910,232 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

autosomal recessive cutis laxa type IB (ISO)

Bardet-Biedl syndrome (ISO)

Breast Neoplasms (ISO)

congenital muscular dystrophy-dystroglycanopathy type A1 (ISO)

congenital muscular dystrophy-dystroglycanopathy type A13 (ISO)

genetic disease (ISO)

glycogen storage disease V (ISO)

intellectual disability (ISO)

muscular dystrophy-dystroglycanopathy type B1 (IAGP)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

Walker-Warburg syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP)

acrylamide (ISO)

all-trans-retinoic acid (EXP,ISO)

bisphenol A (ISO)

carbon nanotube (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

disodium selenite (ISO)

endosulfan (ISO)

ethanol (EXP,ISO)

fenthion (EXP)

folic acid (EXP)

gentamycin (ISO)

glafenine (ISO)

ketamine (ISO)

lipopolysaccharide (ISO)

methidathion (EXP)

oxaliplatin (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (EXP)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (ISO)

topotecan (ISO)

valproic acid (EXP,ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IMP)

poly-N-acetyllactosamine biosynthetic process (ISO)

protein glycosylation (IMP)

protein O-linked mannosylation (IBA,ISO)

Cellular Component

Golgi apparatus (IBA,ISO)

membrane (IEA)

Molecular Function

glucuronosyltransferase activity (IBA,ISO)

glycosyltransferase activity (IEA)

metal ion binding (IEA)

N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity (ISO)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

keratan sulfate biosynthetic pathway (IEA)

lacto-series glycosphingolipid metabolic pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal axon fasciculation (IAGP)

abnormal axon guidance (IAGP)

abnormal basement membrane morphology (IAGP)

abnormal leukocyte migration (IAGP)

abnormal lymph node cell ratio (IAGP)

abnormal nervous system tract morphology (IAGP)

abnormal neuronal migration (IAGP)

abnormal spinal cord dorsal column morphology (IAGP)

abnormal spinal cord ventral commissure morphology (IAGP)

decreased susceptibility to type IV hypersensitivity reaction (IAGP)

dystrophic muscle (IAGP)

ectopic neuron (IAGP)

embryonic lethality during organogenesis, complete penetrance (IAGP)

embryonic lethality prior to organogenesis (IEA)

embryonic lethality prior to tooth bud stage (IEA)

hunched posture (IAGP)

hydrocephaly (IAGP)

hyperactivity (IEA)

impaired leukocyte tethering or rolling (IAGP)

limb grasping (IAGP)

perinatal lethality, incomplete penetrance (IAGP)

preweaning lethality, complete penetrance (IEA)

radial glial endfoot detachment (IAGP)

skeletal muscle atrophy (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11774238	PMID:12466851	PMID:12477932	PMID:14681479	PMID:15489334	PMID:15728829	PMID:16141072
PMID:16141073	PMID:17334369	PMID:18008318	PMID:20929857	PMID:21224079	PMID:21267068	PMID:21873635	PMID:23217742	PMID:24194600	PMID:24256719	PMID:25279699	PMID:32325033

Genomics

Comparative Map Data

B4gat1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,088,854 - 5,091,162 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	5,088,854 - 5,091,159 (+)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	19	5,088,919 - 5,099,940 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	5,038,826 - 5,041,134 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,038,826 - 5,041,131 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	19	5,038,891 - 5,049,912 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,038,826 - 5,041,134 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	5,038,853 - 5,041,130 (+)	NCBI		MGSCv36	mm8
Celera	19	4,907,924 - 4,910,232 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI

B4GAT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	66,345,374 - 66,347,629 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	66,345,374 - 66,347,629 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	66,112,845 - 66,115,100 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	65,869,419 - 65,871,737 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	65,869,419 - 65,871,671	NCBI
Celera	11	63,432,751 - 63,435,069 (-)	NCBI		Celera
Cytogenetic Map	11	q13.2	NCBI
HuRef	11	62,438,091 - 62,440,409 (-)	NCBI		HuRef
CHM1_1	11	65,996,963 - 65,999,260 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	66,339,037 - 66,341,292 (-)	NCBI		T2T-CHM13v2.0

B4gat1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	211,772,644 - 211,774,866 (+)	NCBI		GRCr8
mRatBN7.2	1	202,343,268 - 202,345,490 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	202,343,240 - 202,346,065 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	210,696,350 - 210,698,572 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	217,788,692 - 217,790,914 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	210,479,723 - 210,481,945 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	220,322,854 - 220,325,076 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	220,416,018 - 220,418,240 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	227,347,041 - 227,349,263 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	207,659,039 - 207,661,261 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	207,812,492 - 207,814,713 (+)	NCBI
Celera	1	199,883,228 - 199,885,450 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

B4gat1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	18,979,545 - 18,981,889 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	18,979,545 - 18,981,889 (+)	NCBI	ChiLan1.0	ChiLan1.0

B4GAT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	67,571,380 - 67,581,736 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	68,622,057 - 68,624,382 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	61,711,028 - 61,713,356 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	65,036,417 - 65,038,678 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	65,036,417 - 65,038,678 (-)	Ensembl	panpan1.1		panPan2

B4GAT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	50,964,645 - 50,966,924 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	50,964,131 - 50,966,264 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	49,573,341 - 49,575,625 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	52,003,229 - 52,005,513 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	52,002,722 - 52,010,726 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	51,103,344 - 51,105,628 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	50,677,534 - 50,679,818 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	51,467,682 - 51,469,966 (+)	NCBI		UU_Cfam_GSD_1.0

B4gat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	6,815,004 - 6,817,265 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	3,257,329 - 3,259,719 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	3,257,329 - 3,259,614 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B4GAT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,043,508 - 6,045,817 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,043,594 - 6,045,220 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,120,106 - 5,122,374 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B4GAT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	7,929,712 - 7,932,034 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	7,929,862 - 7,932,086 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	105,210,923 - 105,213,283 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B4gat1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	20,033,747 - 20,036,021 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	20,033,750 - 20,036,019 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in B4gat1
61 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	259
Count of miRNA genes:	206
Interacting mature miRNAs:	241
Transcripts:	ENSMUST00000053705
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300776	Lfp3_m	long free running period 3 (mouse)			Not determined		19	1	20328703	Mouse
4142161	Drinksac2_m	drink saccharin 2 (mouse)			Not determined			1	20695286	Mouse
4142302	Nstr1_m	nerve sheath tumor resistance QTL 1 (mouse)			Not determined		19	1	22371338	Mouse
1301271	Datd_m	dopamine transporter density (mouse)			Not determined		19	1	32340234	Mouse
4142406	Pbctlp1_m	peripheral blood cytotoxic T lymphocyte percentage 1 (mouse)			Not determined			1	32875174	Mouse
1300904	Chab5_m	cholesterol absorption 5 (mouse)			Not determined		19	1653764	35653927	Mouse
26884385	Skwq14_m	skull length QTL 14, 16 week (mouse)					19	3250000	35877400	Mouse
1301800	Faq10_m	fluctuating asymmetry QTL 10 (mouse)			Not determined		19	3323216	37323348	Mouse
1300923	Bits4_m	bitterness sensitivity 4 (mouse)			Not determined		19	3323216	37323348	Mouse
1302126	Skull26_m	skull morphology 26 (mouse)			Not determined		19	3323216	37323348	Mouse
1300591	Pas3_m	pulmonary adenoma susceptibility 3 (mouse)			Not determined		19	3323216	37323348	Mouse
1357819	Tgct2_m	testicular germ cell tumor 2 (mouse)			Not determined		19	3328551	20539663	Mouse
25394536	Skmw86_m	skeletal muscle weight 86, TA (mouse)					19	5064817	8957825	Mouse

Markers in Region

UniSTS:225151

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	5,038,455 - 5,038,628	UniSTS	GRCm38
MGSCv37	19	5,038,455 - 5,038,628	UniSTS	GRCm37
Celera	19	4,907,555 - 4,907,728	UniSTS
Cytogenetic Map	19	A	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_175383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC124502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK083857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK158899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AV344651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC002191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC069927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000053705 ⟹ ENSMUSP00000062016

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,088,854 - 5,091,159 (+)	Ensembl
GRCm38.p6 Ensembl	19	5,038,826 - 5,041,131 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000235776 ⟹ ENSMUSP00000157645

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,088,935 - 5,091,158 (+)	Ensembl
GRCm38.p6 Ensembl	19	5,038,907 - 5,041,130 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000236560 ⟹ ENSMUSP00000158273

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	5,088,919 - 5,099,940 (+)	Ensembl
GRCm38.p6 Ensembl	19	5,038,891 - 5,049,912 (+)	Ensembl

RefSeq Acc Id:

NM_175383 ⟹ NP_780592

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	5,088,854 - 5,091,162 (+)	NCBI
GRCm38	19	5,038,826 - 5,041,134 (+)	ENTREZGENE
MGSCv37	19	5,038,826 - 5,041,134 (+)	RGD
Celera	19	4,907,924 - 4,910,232 (+)	RGD
cM Map	19		ENTREZGENE

Sequence:

show sequence

GAGCGGATGGTGGGAGGAGCTGCGCGTAGGGCTCGGCTGGCCTCGGCTGGCCTCGGCTGCGCTC
GGGAGGCTGCGGTAAATCCGGGCTTGCGGTGGCTGGCAGAGGCTACGGCCCGGTGGTCCCTGCT
TCGTGCCGGGATCCCCGAGAGCCATGCAAATGTCCTACGCCATCCGATGCGCCTTCTACCAGCT
GCTGCTGGCCGCGCTCATGTTGGTGGCAATGCTGCAGCTGCTCTACCTATCGCTGCTCTCTGGA
CTGCACGGCCAGGAGGAGCAGGAACAGTATTTCGAGTTCTTCCCGCCGTCTCCGCGATCCGTAG
ACCAGGTAAAGTCTCAACTCCGCACCGCACTGGCCTCCGGAGGCGTTCTAGATGCCAGCGGCGA
TTATCGCGTCTACAGGGGTCTATTGAAGACCACCATGGACCCCAACGATGTCATCTTAGCTACG
CATGCCAGTGTGGACAACCTACTACACCTGTCCGGACTTCTGGAGCGCTGGGAGGGTCCGCTGT
CCGTTTCAGTGTTCGCGGCCACCAAAGAGGAGGCGCAGCTGGCCACGGTGCTGGCCTACGCGCT
GAGTAGCCACTGCCCCGAGATGCGCGCCAGGGTCGCCATGCACCTCGTGTGCCCCTCGCGCTAT
GAGGCTGCTGTGCCCGACCCCCGAGAACCTGGAGAGTTTGCCCTGCTGCGGTCCTGCCAAGAGG
TCTTTGACAAGCTAGCCAGGGTGGCCCAGCCCGGGATTAATTATGCACTAGGGACCAACACCTC
CTATCCCAATAACCTGTTAAGGAATCTGGCTCGGGAAGAGGCCAACTACGCCCTGGTGATTGAT
GTGGACATGGTGCCCAGCGAAGGGCTGTGGAGAGGCCTGAGGGAAATGTTGGATCAGAGCAATC
ACTGGGATGGCACAGCCCTGGTGGTGCCTGCATTTGAAATCCGCCGGTCCCGCCGAATGCCGAT
GAACAAGAACGAGCTGGTGCAGCTCTATCAGGTGGGCGAAGTCCGGCCCTTCTATTATGGGCTG
TGCACGCCTTGCCATGCGCCCACCAACTACTCCCGCTGGGTCAACCTGCCAGAGGAGAGCTTGC
TGAGACCTGCCTACGTGGTGCCCTGGAGGGACCCCTGGGAACCATTTTATGTGGCTGGAGGAAA
GGTGCCCACATTTGACGAACGCTTTCGGCAGTATGGTTTCAATCGAATCAGCCAGGCTTGTGAG
CTGCACGTGGCAGGGTTTAATTTTGAGGTGCTGAACGAAGGTTTTCTGGTTCATAAGGGATTCA
AGGAGGCATTGAAGTTCCATCCCCAAAAGGAGGCTGAAAACCAGCGCAATAAGATCCTTTACCG
CCAGTTCAAACAGGAGTTGAAGGCTAGGTACCCCAACTCTCCCCACCGATGCTGAGTCCTTGTC
TTCCATGGTCTGAGAATTGTCAGTATCTGGCTCCAGGCCTGACTGGGGTAAGAAACATGCCTCC
ACTTTACAGAGGTAGCTATGGGTTTGGAACACTGGACTTGACTATGGGGTGCTGGGAGTCAAGT
CTCAGCTTTACCACTAACTAGCTGTGTGGCCTTGAGCAAATACTATTACTTCTCTGAGCCTCCG
TTACGCCGTCTGTAAAAAGGGAGGTGAAAATACCTACCTCACAGAACTGTTGGCTCAGATGAGA
CGCTGTATGTGTAAACATCCTGTAAACTTCGTACAAATGTGAAGTATTATTAATATTGCTACAG
TGTTATTATGATATTGTTACTATTAACCATGTTGGGTGGATAGCGGCAGAGCAAAAAGTTTGAA
TGGGCTAGAGGTGGGAAGCTTGAGTGTTTAATAAAATGAGGCTTTTGGAAAGAAAGATGAAAAC
GTAGAATGTAGTGCTAAGAACGTTTCCCGTTCTCTCATGCCTTCGCCCTCCGCCCTCCGAGATC
CCTGAAGGAGGAAAGAGATAAAGGTTAAAGTCCCAGATCTGTGCCCTCCAGTAGGTTGGGCTGC
TCATTTGCCTTCGGATGACATTATGTAAATAAACGAATGTCACACCCACAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_780592	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH02191	(Get FASTA)	NCBI Sequence Viewer
	AAH69927	(Get FASTA)	NCBI Sequence Viewer
	BAC34203	(Get FASTA)	NCBI Sequence Viewer
	BAC39041	(Get FASTA)	NCBI Sequence Viewer
	BAE34720	(Get FASTA)	NCBI Sequence Viewer
	EDL33089	(Get FASTA)	NCBI Sequence Viewer
	EDL33090	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000062016
	ENSMUSP00000062016.7
	ENSMUSP00000157645.2
	ENSMUSP00000158273.2
GenBank Protein	Q8BWP8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_780592 ⟸ NM_175383

- UniProtKB:

Q8BJH9 (UniProtKB/Swiss-Prot), Q3TY43 (UniProtKB/Swiss-Prot), Q99LW7 (UniProtKB/Swiss-Prot), Q8BWP8 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MQMSYAIRCAFYQLLLAALMLVAMLQLLYLSLLSGLHGQEEQEQYFEFFPPSPRSVDQVKSQLR
TALASGGVLDASGDYRVYRGLLKTTMDPNDVILATHASVDNLLHLSGLLERWEGPLSVSVFAAT
KEEAQLATVLAYALSSHCPEMRARVAMHLVCPSRYEAAVPDPREPGEFALLRSCQEVFDKLARV
AQPGINYALGTNTSYPNNLLRNLAREEANYALVIDVDMVPSEGLWRGLREMLDQSNHWDGTALV
VPAFEIRRSRRMPMNKNELVQLYQVGEVRPFYYGLCTPCHAPTNYSRWVNLPEESLLRPAYVVP
WRDPWEPFYVAGGKVPTFDERFRQYGFNRISQACELHVAGFNFEVLNEGFLVHKGFKEALKFHP
QKEAENQRNKILYRQFKQELKARYPNSPHRC

hide sequence

RefSeq Acc Id:

ENSMUSP00000158273 ⟸ ENSMUST00000236560

RefSeq Acc Id:

ENSMUSP00000062016 ⟸ ENSMUST00000053705

RefSeq Acc Id:

ENSMUSP00000157645 ⟸ ENSMUST00000235776

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8BWP8-F1-model_v2	AlphaFold	Q8BWP8	1-415	view protein structure

Promoters

RGD ID:

6829880

Promoter ID:

MM_KWN:26048

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000113754, UC008GBX.1, UC008GBY.1, UC008GBZ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	19	5,038,701 - 5,041,532 (+)	MPROMDB

RGD ID:

13678478

Promoter ID:

EPDNEW_M23388

Type:

initiation region

Name:

B4gat1_1

Description:

Mus musculus beta-1,4-glucuronyltransferase 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	19	5,038,893 - 5,038,953	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1919680	AgrOrtholog
Ensembl Genes	ENSMUSG00000047379	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSG00000117789	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000053705	ENTREZGENE
	ENSMUST00000053705.8	UniProtKB/Swiss-Prot
	ENSMUST00000235776.2	UniProtKB/Swiss-Prot
	ENSMUST00000236560.2	UniProtKB/Swiss-Prot
InterPro	B4GAT1	UniProtKB/Swiss-Prot
KEGG Report	mmu:108902	UniProtKB/Swiss-Prot
MGD	MGI:1919680	ENTREZGENE
NCBI Gene	108902	ENTREZGENE
PANTHER	BETA-1,4-GLUCURONYLTRANSFERASE 1	UniProtKB/Swiss-Prot
	PTHR46420	UniProtKB/Swiss-Prot
Pfam	Glyco_transf_49	UniProtKB/Swiss-Prot
PhenoGen	B4gat1	PhenoGen
UniProt	B4GA1_MOUSE	UniProtKB/Swiss-Prot
	Q3TY43	ENTREZGENE
	Q8BJH9	ENTREZGENE
	Q8BWP8	ENTREZGENE
	Q99LW7	ENTREZGENE
UniProt Secondary	Q3TY43	UniProtKB/Swiss-Prot
	Q8BJH9	UniProtKB/Swiss-Prot
	Q99LW7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-01-27	B4gat1	beta-1,4-glucuronyltransferase 1	B3gnt1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Mammalian Phenotype