Aldh1a1 (aldehyde dehydrogenase family 1, subfamily A1) - Rat Genome Database
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Gene: Aldh1a1 (aldehyde dehydrogenase family 1, subfamily A1) Mus musculus
Analyze
Symbol: Aldh1a1
Name: aldehyde dehydrogenase family 1, subfamily A1
RGD ID: 1332089
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human ALDH1A1 (aldehyde dehydrogenase 1 family member A1); PARTICIPATES IN cyclophosphamide pharmacodynamics pathway; cyclophosphamide pharmacokinetics pathway; ifosfamide pharmacodynamics pathway; INTERACTS WITH (S)-nicotine; 1,1-dichloroethene; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Ahd; Ahd-; Ahd-2; Ahd2; alcohol dehydrogenase family 1, subfamily A1; alcohol dehydrogenase family 1, subfamily A2; ALD; aldehyde dehydrogenase 1, liver cytosolic (class 1); aldehyde dehydrogenase family 1 member A1; aldehyde dehydrogenase, cytosolic; ALDH-E1; Aldh1; Aldh1a2; ALHDII; E1; Ral; RALDH 1; Raldh1; retinal dehydrogenase 1
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391920,469,947 - 20,620,827 (+)NCBIGRCm39mm39
GRCm39 Ensembl1920,470,079 - 20,620,829 (+)Ensembl
GRCm381920,492,583 - 20,643,463 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1920,492,715 - 20,643,465 (+)EnsemblGRCm38mm10GRCm38
MGSCv371920,676,472 - 20,717,952 (+)NCBIGRCm37mm9NCBIm37
MGSCv361920,669,079 - 20,710,559 (+)NCBImm8
Celera1921,323,202 - 21,366,435 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1913.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(S)-nicotine  (EXP,ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
1-naphthyl isothiocyanate  (ISO)
1-nitropropane  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-diaminotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-diaminotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-[cyclohexyl(oxo)methyl]-3,6,7,11b-tetrahydro-1H-pyrazino[2,1-a]isoquinolin-4-one  (ISO)
2-acetamidofluorene  (ISO)
2-amino-4,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-hexenal  (EXP)
2-nitro-p-phenylenediamine  (ISO)
2-nitrofluorene  (ISO)
2-nitropropane  (ISO)
22-Hydroxycholesterol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4'-hydroxyacetophenone  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(diethylamino)benzaldehyde  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-acetylaminofluorene  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroperoxycyclophosphamide  (ISO)
4-hydroxynon-2-enal  (EXP,ISO)
4-nitro-1,2-phenylenediamine  (ISO)
4-nitrophenol  (ISO)
4-nitrophenyl acetate  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
7H-xanthine  (ISO)
8-Br-cAMP  (ISO)
9-cis-retinal  (ISO)
9H-xanthine  (ISO)
acetaldehyde  (EXP,ISO)
acetamide  (ISO)
acetic acid  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (EXP,ISO)
adenosine 5'-monophosphate  (ISO)
aflatoxin B1  (ISO)
Aldophosphamide  (ISO)
all-trans-retinal  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allopurinol  (ISO)
alpha-hexachlorocyclohexane  (ISO)
amiodarone  (ISO)
amitriptyline  (ISO)
amphetamine  (EXP)
anthracen-2-amine  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
auramine O  (ISO)
azathioprine  (ISO)
bacitracin  (ISO)
benzaldehyde  (EXP,ISO)
benzbromarone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzophenone  (ISO)
benzyl isothiocyanate  (EXP)
beta-naphthoflavone  (ISO)
bifenthrin  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (ISO)
bromobenzene  (ISO)
buta-1,3-diene  (EXP)
butylated hydroxyanisole  (EXP)
Butylbenzyl phthalate  (EXP)
butyric acid  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
calcitriol  (EXP,ISO)
captan  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carboplatin  (ISO)
casticin  (ISO)
chloroform  (ISO)
chlorohydrocarbon  (ISO)
chlorpromazine  (ISO)
chlorpyrifos  (EXP)
ciglitazone  (ISO)
cimetidine  (ISO)
ciprofibrate  (EXP,ISO)
ciprofloxacin  (ISO)
cisplatin  (EXP,ISO)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
clofibric acid  (EXP,ISO)
clomipramine  (ISO)
clozapine  (EXP)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
curcumin  (EXP,ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cyhalothrin  (ISO)
cyproconazole  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
Diallyl sulfide  (EXP,ISO)
diallyl trisulfide  (ISO)
diamminedichloroplatinum  (ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
dichlorvos  (ISO)
dicrotophos  (ISO)
diethyl maleate  (EXP)
diethyl phthalate  (EXP)
diheptyl phthalate  (ISO)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
diuron  (ISO)
doxorubicin  (EXP)
Echimidine  (ISO)
endosulfan  (ISO)
enilconazole  (ISO)
epoxiconazole  (ISO)
erythromycin estolate  (ISO)
ethanol  (EXP,ISO)
ethoxyquin  (EXP,ISO)
ethyl methanesulfonate  (ISO)
felbamate  (ISO)
fipronil  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
folpet  (EXP)
fumonisin B1  (EXP)
furan  (ISO)
furosemide  (ISO)
gadodiamide hydrate  (ISO)
gemcitabine  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
glafenine  (ISO)
glutathione  (ISO)
Heliotrine  (ISO)
hexanal  (ISO)
hydrogen peroxide  (ISO)
imipramine  (ISO)
indirubin-3'-monoxime  (EXP)
indole-3-methanol  (EXP,ISO)
irinotecan  (ISO)
ketoconazole  (ISO)
L-ethionine  (ISO)
lapatinib  (ISO)
Lasiocarpine  (ISO)
lead diacetate  (ISO)
limonin  (ISO)
lipopolysaccharide  (EXP)
magnesium atom  (ISO)
magnesium dichloride  (ISO)
malonaldehyde  (EXP,ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
miconazole  (ISO)
monosodium L-glutamate  (EXP)
monuron  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
N-nitrosomorpholine  (ISO)
NAD zwitterion  (EXP,ISO)
NAD(+)  (EXP,ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nickel atom  (ISO)
nickel dichloride  (EXP,ISO)
nickel subsulfide  (EXP)
niclosamide  (ISO)
nicotine  (EXP,ISO)
nimesulide  (ISO)
nitroglycerin  (ISO)
non-2-enal  (ISO)
ochratoxin A  (ISO)
octadecanoic acid  (ISO)
okadaic acid  (EXP)
oleic acid  (ISO)
oltipraz  (EXP)
omeprazole  (ISO)
orphenadrine  (ISO)
p-toluidine  (ISO)
paclitaxel  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
phencyclidine  (EXP)
phenformin  (ISO)
phenobarbital  (EXP,ISO)
phenytoin  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
pravastatin  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
prochloraz  (ISO)
progesterone  (EXP)
propanal  (EXP,ISO)
propiconazole  (EXP,ISO)
pyrazinecarboxamide  (ISO)
pyrogallol  (EXP)
quartz  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
Soman  (ISO)
spironolactone  (EXP)
streptozocin  (ISO)
sulfasalazine  (EXP)
sulforaphane  (ISO)
sulindac  (ISO)
T-2 toxin  (ISO)
tacrolimus hydrate  (EXP)
tanespimycin  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
thiacloprid  (ISO)
thioacetamide  (ISO)
Thiotepa  (ISO)
titanium dioxide  (EXP,ISO)
toluene  (ISO)
transplatin  (ISO)
triadimefon  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP,ISO)
triclosan  (ISO)
trimethylarsine oxide  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
Tungsten carbide  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (ISO)

References

Additional References at PubMed
PMID:751648   PMID:896803   PMID:1425331   PMID:1935685   PMID:2044153   PMID:2055490   PMID:2222572   PMID:2571572   PMID:7274657   PMID:7606739   PMID:7774911   PMID:7835908  
PMID:7958964   PMID:7993664   PMID:8058062   PMID:8093609   PMID:8393814   PMID:8663049   PMID:9092472   PMID:9097025   PMID:9166904   PMID:9819390   PMID:10191271   PMID:10385706  
PMID:10464095   PMID:10490294   PMID:10570467   PMID:10753524   PMID:10837133   PMID:10906479   PMID:10922068   PMID:11013254   PMID:11025231   PMID:11044606   PMID:11744377   PMID:11747070  
PMID:11876656   PMID:11959834   PMID:12128098   PMID:12454286   PMID:12477932   PMID:12576512   PMID:12610736   PMID:12693930   PMID:12808103   PMID:12834868   PMID:12851412   PMID:14595844  
PMID:14681479   PMID:15161092   PMID:15366004   PMID:15489334   PMID:15531370   PMID:15584907   PMID:15760467   PMID:15765518   PMID:15766748   PMID:16026781   PMID:16047160   PMID:16109395  
PMID:16207763   PMID:16326081   PMID:16339193   PMID:16438966   PMID:16602821   PMID:16611695   PMID:16615129   PMID:16782087   PMID:17010133   PMID:17175089   PMID:17257171   PMID:17270348  
PMID:17332066   PMID:17529981   PMID:17567582   PMID:17592014   PMID:17687036   PMID:18076286   PMID:18307411   PMID:18331719   PMID:18391535   PMID:18393306   PMID:18399539   PMID:18561907  
PMID:18665267   PMID:18971422   PMID:18985738   PMID:19448158   PMID:19449303   PMID:19515692   PMID:19519663   PMID:19549509   PMID:19618468   PMID:19737349   PMID:19783990   PMID:19795519  
PMID:19842188   PMID:20054864   PMID:20122913   PMID:20503368   PMID:20532162   PMID:21057506   PMID:21059124   PMID:21148184   PMID:21167960   PMID:21183788   PMID:21220692   PMID:21256123  
PMID:21267068   PMID:21308776   PMID:21436255   PMID:21539829   PMID:21784415   PMID:21820362   PMID:21873635   PMID:21895658   PMID:21953779   PMID:22069189   PMID:22195027   PMID:22198153  
PMID:22278924   PMID:22384032   PMID:22432025   PMID:22537018   PMID:22555438   PMID:22561685   PMID:22748019   PMID:22869719   PMID:22930583   PMID:22933113   PMID:22998872   PMID:23012458  
PMID:23142317   PMID:23193184   PMID:23213462   PMID:23484127   PMID:23536097   PMID:23625387   PMID:23637192   PMID:23786406   PMID:23806210   PMID:23829703   PMID:23850584   PMID:23863478  
PMID:23951127   PMID:23963803   PMID:24005908   PMID:24066094   PMID:24080087   PMID:24156634   PMID:24324671   PMID:24466150   PMID:24577091   PMID:24865427   PMID:24952961   PMID:24997521  
PMID:25064526   PMID:25155611   PMID:25261715   PMID:25311225   PMID:25523391   PMID:25715397   PMID:25919081   PMID:26124079   PMID:26164566   PMID:26242870   PMID:26427057   PMID:26430123  
PMID:26751691   PMID:26885858   PMID:26892828   PMID:27144456   PMID:27214556   PMID:27572106   PMID:27597886   PMID:27746183   PMID:28117896   PMID:28130357   PMID:28250050   PMID:28274610  
PMID:28378742   PMID:28706191   PMID:28715412   PMID:28800615   PMID:29093497   PMID:29095919   PMID:29609731   PMID:29688375   PMID:29689292   PMID:29986869   PMID:30166332   PMID:30250298  
PMID:30487180   PMID:30718509   PMID:30837649   PMID:30885956   PMID:31043608   PMID:31365862   PMID:31401066   PMID:31515492   PMID:31772170   PMID:31913463   PMID:32001436   PMID:32325033  
PMID:32385093   PMID:32494737   PMID:32561725   PMID:32562661   PMID:32571845   PMID:33201874  


Genomics

Comparative Map Data
Aldh1a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391920,469,947 - 20,620,827 (+)NCBIGRCm39mm39
GRCm39 Ensembl1920,470,079 - 20,620,829 (+)Ensembl
GRCm381920,492,583 - 20,643,463 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1920,492,715 - 20,643,465 (+)EnsemblGRCm38mm10GRCm38
MGSCv371920,676,472 - 20,717,952 (+)NCBIGRCm37mm9NCBIm37
MGSCv361920,669,079 - 20,710,559 (+)NCBImm8
Celera1921,323,202 - 21,366,435 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1913.91NCBI
ALDH1A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl972,900,671 - 73,080,442 (-)EnsemblGRCh38hg38GRCh38
GRCh38972,900,671 - 72,953,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37975,515,587 - 75,567,969 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36974,705,407 - 74,757,789 (-)NCBINCBI36hg18NCBI36
Build 34972,745,141 - 72,797,523NCBI
Celera946,088,447 - 46,140,830 (-)NCBI
Cytogenetic Map9q21.13NCBI
HuRef945,338,144 - 45,390,773 (-)NCBIHuRef
CHM1_1975,662,616 - 75,715,255 (-)NCBICHM1_1
Aldh1a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21218,000,470 - 218,152,962 (+)NCBI
Rnor_6.0 Ensembl1238,222,521 - 238,264,330 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01238,222,689 - 238,264,381 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01245,340,587 - 245,562,970 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41223,731,675 - 223,773,285 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11223,895,697 - 223,937,307 (+)NCBI
Celera1215,379,207 - 215,421,068 (+)NCBICelera
Cytogenetic Map1q51NCBI
ALDH1A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1971,680,352 - 71,859,144 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl971,680,890 - 71,814,085 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0951,737,305 - 51,916,648 (+)NCBIMhudiblu_PPA_v0panPan3
ALDH1A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl184,940,411 - 84,994,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1184,940,411 - 84,994,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Aldh1a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365038,869,073 - 8,953,726 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALDH1A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,161,296 - 226,217,312 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,163,347 - 226,217,342 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,778,605 - 252,808,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ALDH1A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11283,949,529 - 84,092,452 (-)NCBI
ChlSab1.1 Ensembl1283,949,399 - 84,009,003 (-)Ensembl
Aldh1a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624811505,297 - 563,795 (-)NCBI

Position Markers
Aldh1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381920,629,071 - 20,630,740UniSTSGRCm38
MGSCv371920,703,561 - 20,705,230UniSTSGRCm37
Celera1921,366,267 - 21,366,434UniSTS
Celera1921,365,898 - 21,366,257UniSTS
Celera1921,353,706 - 21,353,803UniSTS
Cytogenetic Map19BUniSTS
cM Map1920.0UniSTS
cM Map1912.0UniSTS
cM Map1912.0UniSTS
M74570  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381920,643,152 - 20,643,310UniSTSGRCm38
MGSCv371920,717,642 - 20,717,800UniSTSGRCm37
Celera1921,366,125 - 21,366,283UniSTS
Cytogenetic Map19BUniSTS
cM Map1912.0UniSTS
Whitehead/MRC_RH19197.39UniSTS
Whitehead/MRC_RH19214.16UniSTS
Whitehead_YAC19 UniSTS
Aldh1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19BUniSTS
Aldh1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19BUniSTS
Aldh1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381920,643,294 - 20,643,461UniSTSGRCm38
MGSCv371920,717,784 - 20,717,951UniSTSGRCm37
Celera1921,366,267 - 21,366,434UniSTS
Cytogenetic Map19BUniSTS
Aldh1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381920,630,702 - 20,630,799UniSTSGRCm38
MGSCv371920,705,192 - 20,705,289UniSTSGRCm37
Celera1921,353,706 - 21,353,803UniSTS
Cytogenetic Map19BUniSTS
Aldh1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19BUniSTS
Aldh1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381920,642,925 - 20,643,284UniSTSGRCm38
MGSCv371920,717,415 - 20,717,774UniSTSGRCm37
Celera1921,365,898 - 21,366,257UniSTS
Cytogenetic Map19BUniSTS
M74570  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381920,643,295 - 20,643,377UniSTSGRCm38
MGSCv371920,717,785 - 20,717,867UniSTSGRCm37
Celera1921,366,268 - 21,366,350UniSTS
Cytogenetic Map19BUniSTS
Whitehead/MRC_RH19197.39UniSTS
Whitehead/MRC_RH19214.16UniSTS
Aldh1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19BUniSTS
cM Map1912.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120645286Mouse
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122321310Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132362870Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132897810Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19167640035676563Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19320000035900000Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19327855120562299Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19334585237345984Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19334585237345984Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19334585237345984Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19334585237345984Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19533596239336106Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19932831543328421Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19981005343810202Mouse
14928311Manh85_mmandible shape 85 (mouse)191193738945937389Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191494561648945738Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191593520749935319Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191593520749935319Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191831776252317981Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191831776252317981Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192025691554257062Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192025691554257062Mouse
1301197Tlyr1_mthymic lymphoma resistance 1 (mouse)Not determined192056216425336432Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:117
Interacting mature miRNAs:121
Transcripts:ENSMUST00000087638
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000087638   ⟹   ENSMUSP00000084918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1920,601,961 - 20,643,462 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224358
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1920,492,732 - 20,566,853 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224807
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1920,492,715 - 20,556,410 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225249
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1920,492,760 - 20,541,377 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225313   ⟹   ENSMUSP00000153011
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1920,492,759 - 20,620,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225337   ⟹   ENSMUSP00000153410
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1920,492,715 - 20,643,465 (+)Ensembl
RefSeq Acc Id: NM_001361503   ⟹   NP_001348432
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391920,469,947 - 20,620,827 (+)NCBI
GRCm381920,492,583 - 20,643,463 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361504   ⟹   NP_001348433
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391920,469,947 - 20,620,827 (+)NCBI
GRCm381920,492,583 - 20,643,463 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361505   ⟹   NP_001348434
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391920,469,947 - 20,620,827 (+)NCBI
GRCm381920,492,583 - 20,643,463 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361506   ⟹   NP_001348435
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391920,469,947 - 20,620,827 (+)NCBI
GRCm381920,492,583 - 20,643,463 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013467   ⟹   NP_038495
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391920,579,332 - 20,620,827 (+)NCBI
GRCm381920,601,968 - 20,643,463 (+)NCBI
MGSCv371920,676,472 - 20,717,952 (+)RGD
Celera1921,323,202 - 21,366,435 (+)RGD
cM Map19 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038495   ⟸   NM_013467
- UniProtKB: P24549 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001348432   ⟸   NM_001361503
RefSeq Acc Id: NP_001348433   ⟸   NM_001361504
RefSeq Acc Id: NP_001348434   ⟸   NM_001361505
RefSeq Acc Id: NP_001348435   ⟸   NM_001361506
RefSeq Acc Id: ENSMUSP00000153011   ⟸   ENSMUST00000225313
RefSeq Acc Id: ENSMUSP00000153410   ⟸   ENSMUST00000225337
RefSeq Acc Id: ENSMUSP00000084918   ⟸   ENSMUST00000087638
Protein Domains
Aldedh

Promoters
RGD ID:13679084
Promoter ID:EPDNEW_M23691
Type:multiple initiation site
Name:Aldh1a1_1
Description:Mus musculus aldehyde dehydrogenase family 1, subfamily A1 ,transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381920,601,968 - 20,602,028EPDNEW
RGD ID:6829825
Promoter ID:MM_KWN:26628
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver,   Lung
Transcripts:OTTMUST00000050305
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361920,676,214 - 20,676,714 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1353450 AgrOrtholog
Ensembl Genes ENSMUSG00000053279 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000084918 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000153011 UniProtKB/TrEMBL
  ENSMUSP00000153410 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000087638 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000225313 UniProtKB/TrEMBL
  ENSMUST00000225337 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.309.10 UniProtKB/Swiss-Prot
  3.40.605.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ald_DH/histidinol_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_DH_C UniProtKB/Swiss-Prot
  Ald_DH_CS_CYS UniProtKB/Swiss-Prot
  Ald_DH_CS_GLU UniProtKB/Swiss-Prot
  Ald_DH_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aldehyde_DH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11668 UniProtKB/Swiss-Prot
MGD MGI:1353450 ENTREZGENE
NCBI Gene 11668 ENTREZGENE
Pfam Aldedh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB ALDH1A1 RGD
PhenoGen Aldh1a1 PhenoGen
PROSITE ALDEHYDE_DEHYDR_CYS UniProtKB/Swiss-Prot
  ALDEHYDE_DEHYDR_GLU UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53720 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YCZ0_MOUSE UniProtKB/TrEMBL
  AL1A1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q7TQJ0 UniProtKB/Swiss-Prot
  Q811J0 UniProtKB/Swiss-Prot