Lpxn (leupaxin) - Rat Genome Database

Name: Lpxn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Lpxn (leupaxin) Mus musculus

Analyze

Symbol:

Lpxn

Name:

leupaxin

RGD ID:

1312735

MGI Page

MGI

Description:

Enables transcription coregulator activity. Involved in negative regulation of B cell receptor signaling pathway and regulation of cell adhesion mediated by integrin. Located in focal adhesion; nucleus; and podosome. Is expressed in central nervous system; genitourinary system; and thymus. Orthologous to human LPXN (leupaxin).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

4933402K05Rik; A530083L21Rik; AV278559; LDPL

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LPXN (leupaxin)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Lpxn (leupaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lpxn (leupaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LPXN (leupaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LPXN (leupaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lpxn (leupaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LPXN (leupaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LPXN (leupaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lpxn (leupaxin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Lpxn (leupaxin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LPXN (leupaxin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lpxn (leupaxin)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|ZFIN)
Caenorhabditis elegans (roundworm):	pxl-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PXL1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	Pax	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	12,773,251 - 12,811,177 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	12,773,557 - 12,811,171 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	12,795,887 - 12,833,813 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	12,796,193 - 12,833,807 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	12,873,099 - 12,908,298 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	12,865,628 - 12,900,827 (+)	NCBI		MGSCv36	mm8
Celera	19	13,465,696 - 13,499,415 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	8.73	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-amino-2,6-dinitrotoluene (ISO)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

acetamide (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

bisphenol F (ISO)

bleomycin A2 (EXP)

cadmium dichloride (ISO)

cannabidiol (EXP)

carbon nanotube (EXP)

chloropicrin (ISO)

choline (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cycloheximide (ISO)

cyclosporin A (ISO)

deoxynivalenol (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dimethylarsinic acid (EXP)

disodium selenite (ISO)

diuron (ISO)

endosulfan (ISO)

ethyl methanesulfonate (ISO)

fipronil (ISO)

folic acid (EXP)

formaldehyde (ISO)

FR900359 (ISO)

furan (ISO)

gentamycin (ISO)

graphene oxide (EXP)

indometacin (ISO)

iron dichloride (ISO)

L-methionine (EXP)

lead diacetate (ISO)

lead(0) (ISO)

leflunomide (EXP)

lidocaine (ISO)

methamphetamine (ISO)

methyl methanesulfonate (ISO)

methylarsonic acid (EXP)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

N-nitrosodimethylamine (ISO)

nickel atom (ISO)

oxaliplatin (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PD 0325901 (ISO)

pirinixic acid (EXP)

potassium chromate (ISO)

protein kinase inhibitor (ISO)

quercetin (ISO)

resorcinol (ISO)

silicon dioxide (EXP)

silver atom (EXP)

silver(0) (EXP)

sodium arsenate (EXP)

sodium arsenite (EXP,ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (ISO)

thiram (ISO)

titanium dioxide (EXP)

topotecan (ISO)

trichloroethene (ISO)

trimellitic anhydride (EXP)

Triptolide (EXP)

triptonide (EXP)

tunicamycin (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

endothelial cell migration (IBA)

negative regulation of B cell receptor signaling pathway (IBA,IDA,ISO)

negative regulation of cell adhesion (IEA,ISO)

regulation of cell adhesion mediated by integrin (IMP)

substrate adhesion-dependent cell spreading (IBA)

transforming growth factor beta receptor signaling pathway (IBA)

Cellular Component

cell projection (IEA)

cytoplasm (ISO)

cytosol (IEA,ISO)

focal adhesion (IDA,ISO)

nuclear speck (IEA,ISO)

nucleus (IDA,ISO)

perinuclear region of cytoplasm (IEA)

plasma membrane (IEA,ISO)

podosome (IDA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (IPI)

transcription coregulator activity (IDA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal plasma cell differentiation (IAGP)

decreased IgM level (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse brain organization revealed through direct genome-scale TF expression analysis.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Database resources of the National Center for Biotechnology Information.	Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:12674328	PMID:14610273	PMID:15786712	PMID:16141072	PMID:16141073	PMID:16601135	PMID:16914530
PMID:17404256	PMID:17543594	PMID:17640867	PMID:18287559	PMID:18497331	PMID:19917054	PMID:20932939	PMID:21873635	PMID:22922362	PMID:22988430	PMID:28935710	PMID:30333137
PMID:30973865	PMID:31537712	PMID:32269569	PMID:32325033	PMID:32554809	PMID:33473114	PMID:38355793

Genomics

Comparative Map Data

Lpxn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	12,773,251 - 12,811,177 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	12,773,557 - 12,811,171 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	12,795,887 - 12,833,813 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	12,796,193 - 12,833,807 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	12,873,099 - 12,908,298 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	12,865,628 - 12,900,827 (+)	NCBI		MGSCv36	mm8
Celera	19	13,465,696 - 13,499,415 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	8.73	NCBI

LPXN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	58,526,871 - 58,578,891 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	58,526,871 - 58,578,220 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	58,294,344 - 58,345,606 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	58,050,920 - 58,099,910 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	58,050,921 - 58,099,910	NCBI
Celera	11	55,653,452 - 55,704,742 (-)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	54,641,808 - 54,693,302 (-)	NCBI		HuRef
CHM1_1	11	58,159,892 - 58,211,172 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	58,476,376 - 58,527,888 (-)	NCBI		T2T-CHM13v2.0

Lpxn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	219,353,319 - 219,387,743 (+)	NCBI		GRCr8
mRatBN7.2	1	209,928,297 - 209,963,085 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	209,929,202 - 209,963,084 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	218,305,584 - 218,337,659 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	225,223,403 - 225,254,264 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	218,060,059 - 218,092,132 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	229,642,437 - 229,674,129 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	229,642,412 - 229,674,134 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	236,794,159 - 236,827,490 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	215,885,954 - 215,920,253 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	216,044,383 - 216,078,682 (+)	NCBI
Celera	1	207,341,102 - 207,373,177 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Lpxn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	3,459,378 - 3,497,416 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955511	3,459,521 - 3,500,181 (-)	NCBI	ChiLan1.0	ChiLan1.0

LPXN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	59,658,352 - 59,742,793 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	60,714,690 - 60,769,418 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	53,781,270 - 53,832,785 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	57,242,445 - 57,294,282 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	57,243,028 - 57,293,442 (-)	Ensembl	panpan1.1		panPan2

LPXN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	37,809,612 - 37,847,958 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	37,810,007 - 37,847,306 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	37,348,848 - 37,384,216 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	38,465,063 - 38,506,898 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	38,064,684 - 38,100,003 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	37,635,355 - 37,670,733 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	38,257,644 - 38,293,024 (+)	NCBI		UU_Cfam_GSD_1.0

Lpxn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	13,634,695 - 13,670,669 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	3,751,277 - 3,784,503 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	3,750,819 - 3,784,488 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LPXN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	12,540,098 - 12,582,752 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	12,534,780 - 12,582,756 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	12,200,883 - 12,213,285 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LPXN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	14,776,434 - 14,827,095 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	14,779,606 - 14,827,301 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	112,105,999 - 112,152,203 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lpxn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624864	1,818,614 - 1,852,503 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624864	1,815,056 - 1,852,041 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Lpxn
970 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	121
Count of miRNA genes:	114
Interacting mature miRNAs:	116
Transcripts:	ENSMUST00000025601
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142302	Nstr1_m	nerve sheath tumor resistance QTL 1 (mouse)			Not determined		19	1	22371338	Mouse
1301271	Datd_m	dopamine transporter density (mouse)			Not determined		19	1	32340234	Mouse
1300923	Bits4_m	bitterness sensitivity 4 (mouse)			Not determined		19	3323216	37323348	Mouse
11039522	Tbbr4_m	Trypanosoma brucei brucei response 4 (mouse)					19	5313326	39313470	Mouse
4142161	Drinksac2_m	drink saccharin 2 (mouse)			Not determined			1	20695286	Mouse
1357819	Tgct2_m	testicular germ cell tumor 2 (mouse)			Not determined		19	3328551	20539663	Mouse
1302019	Pgia23_m	proteoglycan induced arthritis 23 (mouse)			Not determined		19	9787453	43787602	Mouse
14928311	Manh85_m	mandible shape 85 (mouse)					19	11914789	45914789	Mouse
38455997	Cdtm2_m	CD62L+ CD8 TM cells 2 (mouse)					19	9977364	19977364	Mouse
4142406	Pbctlp1_m	peripheral blood cytotoxic T lymphocyte percentage 1 (mouse)			Not determined			1	32875174	Mouse
1300776	Lfp3_m	long free running period 3 (mouse)			Not determined		19	1	20328703	Mouse
1300904	Chab5_m	cholesterol absorption 5 (mouse)			Not determined		19	1653764	35653927	Mouse
26884385	Skwq14_m	skull length QTL 14, 16 week (mouse)					19	3250000	35877400	Mouse
1301800	Faq10_m	fluctuating asymmetry QTL 10 (mouse)			Not determined		19	3323216	37323348	Mouse
12801464	Rta2_m	retinal aging 2 (mouse)					14	12302874	25302874	Mouse
1300591	Pas3_m	pulmonary adenoma susceptibility 3 (mouse)			Not determined		19	3323216	37323348	Mouse
1302126	Skull26_m	skull morphology 26 (mouse)			Not determined		19	3323216	37323348	Mouse
1301228	Iba4_m	induction of brown adipocytes 4 (mouse)			Not determined		19	9305715	43305821	Mouse

Markers in Region

AV278559

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	12,833,621 - 12,833,717	UniSTS	GRCm38
MGSCv37	19	12,908,111 - 12,908,207	UniSTS	GRCm37
Celera	19	13,499,228 - 13,499,324	UniSTS
Cytogenetic Map	19	A	UniSTS
Whitehead/MRC_RH	19	139.38	UniSTS

Lpxn

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	19	A	UniSTS
cM Map	19	8.73	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001361971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_134152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030250687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030250688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030250689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB053936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB071194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC135633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC150901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK039922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK041111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AV257675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC026563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000025601 ⟹ ENSMUSP00000025601

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	12,775,961 - 12,811,171 (+)	Ensembl
GRCm38.p6 Ensembl	19	12,798,597 - 12,833,807 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000235690 ⟹ ENSMUSP00000157548

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	12,773,557 - 12,811,171 (+)	Ensembl
GRCm38.p6 Ensembl	19	12,796,193 - 12,833,807 (+)	Ensembl

RefSeq Acc Id:

NM_001361971 ⟹ NP_001348900

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	12,773,557 - 12,811,177 (+)	NCBI
GRCm38	19	12,796,193 - 12,833,813 (+)	NCBI

Sequence:

show sequence

AACTTCGCCGAGGGCACTCTGGGAGACGTAGTCCTATTTACTCTGCGCTTCCAGAGAAATCATG
GGAAACTAGAGGCAGAGGGAAGGCTGGGAGCGTCTATCTGAGATGCCTTATTGGAGGAATTGGA
ACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAA
TCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTC
CCTTGAAGGTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAGTGAGGTCCA
AGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATG
GCCCACCTGAGTGAAATGCAGGCCAAGGTTTCAGTGAAAGCAGACACCAGCAGGAAACCCTTGC
CAGACCAGCAGGATCACAAGGCATCTCTGGACTCAATGCTGGGGGACTTGGAACAGGAACTACA
AGATCTTGGGATTGCCACAGTCCCCAAGGGCTACTGTGCTTCCTGCCAGAAGCCAATTGCTGGG
AAGGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGG
AGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCA
CCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATAAAGTGCTGACAGCA
ATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAG
AAGGCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACC
CAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGG
CACCCAGAGTGCTTTGTGTGTGGGGACTGCTTCAGTAGTTTTTCTTCTGGCTCCTTCTTTGAAC
TGGATGGCCGTCCTTTCTGTGAACTCCATTACCATCACCGCCGAGGGACCCTCTGCCATGACTG
TGGGCAGCCCATCACTGGCCGTTGCATCAGTGCCATGGGACATAAATTTCATCCTGAGCACTTC
GTGTGTGCTTTCTGCCTGACACAGCTGCCGAAAGGCATCTTCAAGGAGCAGAACAACAAGACCT
ACTGTGAAAAATGCTTCACTAAGCTCTTTTCACAGTAGTTCTCCTTTGACTCACATCTGCTTCA
TGTTGCCTATAAAACTGAGGCCAAGATAGGAAAGAGCATAGATTCTGTCCCCAGCCTTCTGTTC
AGTGGGCTAATGGAGTACAAACGGGCCTTTGTAGATGTTACTAGGCATATACCTTCATTTTGAA
GATGCTTCTCATTACTTTTTAATTATATATTTAGATTTAGATCATGCTATCAAGAGCCTCTGAA
GGTATATTTCTTATGTGCACAGTTCTTTCCACTGCTGGTTTTCTCTTTCTCACCTTTGACCTCT
GCTGATGCTCCATTCAAATCTTCAGATGTGGGCCACAGGGTTTTACTCTCTCTTTGCTGTCAGG
GGTCACGCAATAGTCTTAAACCCTTAGTGTCTCTGCATTTTGCTTTTTAAGCGGAAGTGTATTT
TTACTGACACATGTGATGAATAAAGCAGCTTGTGGTTTTGGTGACTCAC

hide sequence

RefSeq Acc Id:

NM_134152 ⟹ NP_598913

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	12,775,943 - 12,811,177 (+)	NCBI
GRCm38	19	12,798,579 - 12,833,813 (+)	NCBI
MGSCv37	19	12,873,099 - 12,908,298 (+)	RGD
Celera	19	13,465,696 - 13,499,415 (+)	RGD
cM Map	19		ENTREZGENE

Sequence:

show sequence

ATTCAGTTCCGTTGTGGTCCTCTTCTTCACCACATGCCAACAAAGTTCTTCACAATCTTCGAGA
CTAGAGCATCGCAGGTATAGGACAATGGAAGAGCTGGATGCCTTATTGGAGGAATTGGAACGCT
GCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCAC
AGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTG
AAGGTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAGTGAGGTCCAAGAGC
CAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCA
CCTGAGTGAAATGCAGGCCAAGGTTTCAGTGAAAGCAGACACCAGCAGGAAACCCTTGCCAGAC
CAGCAGGATCACAAGGCATCTCTGGACTCAATGCTGGGGGACTTGGAACAGGAACTACAAGATC
TTGGGATTGCCACAGTCCCCAAGGGCTACTGTGCTTCCTGCCAGAAGCCAATTGCTGGGAAGGT
GATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAG
CTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCC
TGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATAAAGTGCTGACAGCAATGAA
CAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAGGC
TTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAAT
GTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCC
AGAGTGCTTTGTGTGTGGGGACTGCTTCAGTAGTTTTTCTTCTGGCTCCTTCTTTGAACTGGAT
GGCCGTCCTTTCTGTGAACTCCATTACCATCACCGCCGAGGGACCCTCTGCCATGACTGTGGGC
AGCCCATCACTGGCCGTTGCATCAGTGCCATGGGACATAAATTTCATCCTGAGCACTTCGTGTG
TGCTTTCTGCCTGACACAGCTGCCGAAAGGCATCTTCAAGGAGCAGAACAACAAGACCTACTGT
GAAAAATGCTTCACTAAGCTCTTTTCACAGTAGTTCTCCTTTGACTCACATCTGCTTCATGTTG
CCTATAAAACTGAGGCCAAGATAGGAAAGAGCATAGATTCTGTCCCCAGCCTTCTGTTCAGTGG
GCTAATGGAGTACAAACGGGCCTTTGTAGATGTTACTAGGCATATACCTTCATTTTGAAGATGC
TTCTCATTACTTTTTAATTATATATTTAGATTTAGATCATGCTATCAAGAGCCTCTGAAGGTAT
ATTTCTTATGTGCACAGTTCTTTCCACTGCTGGTTTTCTCTTTCTCACCTTTGACCTCTGCTGA
TGCTCCATTCAAATCTTCAGATGTGGGCCACAGGGTTTTACTCTCTCTTTGCTGTCAGGGGTCA
CGCAATAGTCTTAAACCCTTAGTGTCTCTGCATTTTGCTTTTTAAGCGGAAGTGTATTTTTACT
GACACATGTGATGAATAAAGCAGCTTGTGGTTTTGGTGACTCAC

hide sequence

RefSeq Acc Id:

XM_030250687 ⟹ XP_030106547

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	12,773,251 - 12,811,172 (+)	NCBI
GRCm38	19	12,795,887 - 12,833,808 (+)	NCBI

Sequence:

show sequence

CTGCGCGCGCACCTGCCTCCCGGAGGCGCCGCTGTCCCCTCAAGGGTTCTTACTAGCCTAAGAA
GTAGCCTGGACGTTATCCCGCCTCCACCCAGACCCCCACCTTCCTGCTCTGGCCTTTCTGTCCC
CAGCGCCGCCAGCTCTCGAGGGGAGAAGTGATGCCTTATTGGAGGAATTGGAACGCTGCACCTT
TCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAG
AGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAGGTGC
AGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAGTGAGGTCCAAGAGCCAAAGGA
ATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGT
GAAATGCAGGCCAAGGTTTCAGTGAAAGCAGACACCAGCAGGAAACCCTTGCCAGACCAGCAGG
ATCACAAGGCATCTCTGGACTCAATGCTGGGGGACTTGGAACAGGAACTACAAGATCTTGGGAT
TGCCACAGTCCCCAAGGGCTACTGTGCTTCCTGCCAGAAGCCAATTGCTGGGAAGGTGATCCAT
GCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCT
CCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTC
TCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATAAAGTGCTGACAGCAATGAACAAGACA
TGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAGGCTTTCATG
AGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGG
CTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGC
TTTGTGTGTGGGGACTGCTTCAGTAGTTTTTCTTCTGGCTCCTTCTTTGAACTGGATGGCCGTC
CTTTCTGTGAACTCCATTACCATCACCGCCGAGGGACCCTCTGCCATGACTGTGGGCAGCCCAT
CACTGGCCGTTGCATCAGTGCCATGGGACATAAATTTCATCCTGAGCACTTCGTGTGTGCTTTC
TGCCTGACACAGCTGCCGAAAGGCATCTTCAAGGAGCAGAACAACAAGACCTACTGTGAAAAAT
GCTTCACTAAGCTCTTTTCACAGTAGTTCTCCTTTGACTCACATCTGCTTCATGTTGCCTATAA
AACTGAGGCCAAGATAGGAAAGAGCATAGATTCTGTCCCCAGCCTTCTGTTCAGTGGGCTAATG
GAGTACAAACGGGCCTTTGTAGATGTTACTAGGCATATACCTTCATTTTGAAGATGCTTCTCAT
TACTTTTTAATTATATATTTAGATTTAGATCATGCTATCAAGAGCCTCTGAAGGTATATTTCTT
ATGTGCACAGTTCTTTCCACTGCTGGTTTTCTCTTTCTCACCTTTGACCTCTGCTGATGCTCCA
TTCAAATCTTCAGATGTGGGCCACAGGGTTTTACTCTCTCTTTGCTGTCAGGGGTCACGCAATA
GTCTTAAACCCTTAGTGTCTCTGCATTTTGCTTTTTAAGCGGAAGTGTATTTTTACTGACACAT
GTGATGAATAAAGCAGCTTGTGGTTTTGGTGA

hide sequence

RefSeq Acc Id:

XM_030250688 ⟹ XP_030106548

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	12,780,994 - 12,811,172 (+)	NCBI
GRCm38	19	12,803,632 - 12,833,808 (+)	NCBI

Sequence:

show sequence

GAGAGAGACAGAGACAGAGAGACAGAGAGACAGAGAGATCTGCCCTATCTGGTTAAAATCAATA
CCTAGAATGTCAGAAACTAAATTGTAGAGAGAGTATGAAATTGAATGCAACCATAGGAAATACC
AAATGTAGTCTCCTCAGACATTTTCTGGGATATGCCACACTCCTGAAGTGAGATGCCTTATTGG
AGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCT
GGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGT
AACACAAGTCCCTTGAAGGTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGTCTACA
GTGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGA
TGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAGGTTTCAGTGAAAGCAGACACCAGCAGG
AAACCCTTGCCAGACCAGCAGGATCACAAGGCATCTCTGGACTCAATGCTGGGGGACTTGGAAC
AGGAACTACAAGATCTTGGGATTGCCACAGTCCCCAAGGGCTACTGTGCTTCCTGCCAGAAGCC
AATTGCTGGGAAGGTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACT
CACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAA
AAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATAAAGT
GCTGACAGCAATGAACAAGACATGGCACCCAGAGCACTTCTTCTGCTCTCACTGTGGAGAGGTA
TTTGGTGCAGAAGGCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCA
TGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAA
CACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGGGACTGCTTCAGTAGTTTTTCTTCTGGCTCC
TTCTTTGAACTGGATGGCCGTCCTTTCTGTGAACTCCATTACCATCACCGCCGAGGGACCCTCT
GCCATGACTGTGGGCAGCCCATCACTGGCCGTTGCATCAGTGCCATGGGACATAAATTTCATCC
TGAGCACTTCGTGTGTGCTTTCTGCCTGACACAGCTGCCGAAAGGCATCTTCAAGGAGCAGAAC
AACAAGACCTACTGTGAAAAATGCTTCACTAAGCTCTTTTCACAGTAGTTCTCCTTTGACTCAC
ATCTGCTTCATGTTGCCTATAAAACTGAGGCCAAGATAGGAAAGAGCATAGATTCTGTCCCCAG
CCTTCTGTTCAGTGGGCTAATGGAGTACAAACGGGCCTTTGTAGATGTTACTAGGCATATACCT
TCATTTTGAAGATGCTTCTCATTACTTTTTAATTATATATTTAGATTTAGATCATGCTATCAAG
AGCCTCTGAAGGTATATTTCTTATGTGCACAGTTCTTTCCACTGCTGGTTTTCTCTTTCTCACC
TTTGACCTCTGCTGATGCTCCATTCAAATCTTCAGATGTGGGCCACAGGGTTTTACTCTCTCTT
TGCTGTCAGGGGTCACGCAATAGTCTTAAACCCTTAGTGTCTCTGCATTTTGCTTTTTAAGCGG
AAGTGTATTTTTACTGACACATGTGATGAATAAAGCAGCTTGTGGTTTTGGTGA

hide sequence

RefSeq Acc Id:

XM_030250689 ⟹ XP_030106549

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	12,773,720 - 12,811,172 (+)	NCBI
GRCm38	19	12,796,360 - 12,833,808 (+)	NCBI

Sequence:

show sequence

ACAACTGGCAAAAATATTGAGCCAATTACAGGCTAGGGGTCCCTGGGAGAGAATCCTACTTCTT
TTAATCTTTTTTTGTATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGA
ATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAA
ACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAGGTGCAGCTCGTGTATGCAA
CCAATATCCAGGAGCCCAATGTCTACAGTGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCC
CAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG
GTTTCAGTGAAAGCAGACACCAGCAGGAAACCCTTGCCAGACCAGCAGGATCACAAGGCATCTC
TGGACTCAATGCTGGGGGACTTGGAACAGGAACTACAAGATCTTGGGATTGCCACAGTCCCCAA
GGGCTACTGTGCTTCCTGCCAGAAGCCAATTGCTGGGAAGGTGATCCATGCTCTGGGGCAATCC
TGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTG
AGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTA
CTGTGCTGCTCCCATCACAGATAAAGTGCTGACAGCAATGAACAAGACATGGCACCCAGAGCAC
TTCTTCTGCTCTCACTGTGGAGAGGTATTTGGTGCAGAAGGCTTTCATGAGAAGGACAAGAAGC
CATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGT
GCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGGGAC
TGCTTCAGTAGTTTTTCTTCTGGCTCCTTCTTTGAACTGGATGGCCGTCCTTTCTGTGAACTCC
ATTACCATCACCGCCGAGGGACCCTCTGCCATGACTGTGGGCAGCCCATCACTGGCCGTTGCAT
CAGTGCCATGGGACATAAATTTCATCCTGAGCACTTCGTGTGTGCTTTCTGCCTGACACAGCTG
CCGAAAGGCATCTTCAAGGAGCAGAACAACAAGACCTACTGTGAAAAATGCTTCACTAAGCTCT
TTTCACAGTAGTTCTCCTTTGACTCACATCTGCTTCATGTTGCCTATAAAACTGAGGCCAAGAT
AGGAAAGAGCATAGATTCTGTCCCCAGCCTTCTGTTCAGTGGGCTAATGGAGTACAAACGGGCC
TTTGTAGATGTTACTAGGCATATACCTTCATTTTGAAGATGCTTCTCATTACTTTTTAATTATA
TATTTAGATTTAGATCATGCTATCAAGAGCCTCTGAAGGTATATTTCTTATGTGCACAGTTCTT
TCCACTGCTGGTTTTCTCTTTCTCACCTTTGACCTCTGCTGATGCTCCATTCAAATCTTCAGAT
GTGGGCCACAGGGTTTTACTCTCTCTTTGCTGTCAGGGGTCACGCAATAGTCTTAAACCCTTAG
TGTCTCTGCATTTTGCTTTTTAAGCGGAAGTGTATTTTTACTGACACATGTGATGAATAAAGCA
GCTTGTGGTTTTGGTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001348900	(Get FASTA)	NCBI Sequence Viewer
	NP_598913	(Get FASTA)	NCBI Sequence Viewer
	XP_030106547	(Get FASTA)	NCBI Sequence Viewer
	XP_030106548	(Get FASTA)	NCBI Sequence Viewer
	XP_030106549	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH26563	(Get FASTA)	NCBI Sequence Viewer
	BAB40667	(Get FASTA)	NCBI Sequence Viewer
	BAC22615	(Get FASTA)	NCBI Sequence Viewer
	EDL41486	(Get FASTA)	NCBI Sequence Viewer
	EDL41487	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000025601
	ENSMUSP00000025601.7
	ENSMUSP00000157548
	ENSMUSP00000157548.2
GenBank Protein	Q99N69	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_598913 ⟸ NM_134152
- Peptide Label:	isoform 1
- UniProtKB:	Q99N69 (UniProtKB/Swiss-Prot), Q8R355 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEELDALLEELERCTFQDSEEYSNPVSCHLDQQSTEESKIPQTPKTLSSQGNTSPLKVQLVYAT NIQEPNVYSEVQEPKESVLPPKTSAAAQLDELMAHLSEMQAKVSVKADTSRKPLPDQQDHKASL DSMLGDLEQELQDLGIATVPKGYCASCQKPIAGKVIHALGQSWHPEHFVCTHCKEELGSSPFFE RSGLAYCSKDYHRLFSPRCAYCAAPITDKVLTAMNKTWHPEHFFCSHCGEVFGAEGFHEKDKKP YCRKDFLAMFSPKCGGCNRPVLENYLSAMNTVWHPECFVCGDCFSSFSSGSFFELDGRPFCELH YHHRRGTLCHDCGQPITGRCISAMGHKFHPEHFVCAFCLTQLPKGIFKEQNNKTYCEKCFTKLF SQ hide sequence

RefSeq Acc Id:	XP_030106547 ⟸ XM_030250687
- Peptide Label:	isoform X1
- UniProtKB:	A0A494B990 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001348900 ⟸ NM_001361971
- Peptide Label:	isoform 2
- UniProtKB:	A0A494B990 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_030106549 ⟸ XM_030250689
- Peptide Label:	isoform X1
- UniProtKB:	A0A494B990 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_030106548 ⟸ XM_030250688
- Peptide Label:	isoform X1
- UniProtKB:	A0A494B990 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSMUSP00000157548 ⟸ ENSMUST00000235690

Ensembl Acc Id:

ENSMUSP00000025601 ⟸ ENSMUST00000025601

Protein Domains

LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q99N69-F1-model_v2	AlphaFold	Q99N69	1-386	view protein structure

Promoters

RGD ID:

13679032

Promoter ID:

EPDNEW_M23665

Type:

initiation region

Name:

Lpxn_1

Description:

Mus musculus leupaxin , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	19	12,798,583 - 12,798,643	EPDNEW

RGD ID:

6830167

Promoter ID:

MM_KWN:26504

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Spleen

Transcripts:

ENSMUST00000025601

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	19	12,872,926 - 12,873,426 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2147677	AgrOrtholog
Ensembl Genes	ENSMUSG00000024696	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000025601	ENTREZGENE
	ENSMUST00000025601.8	UniProtKB/Swiss-Prot
	ENSMUST00000235690	ENTREZGENE
	ENSMUST00000235690.2	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Tgfb1i1/Leupaxin/TGFB1I1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:107321	UniProtKB/Swiss-Prot
MGD	MGI:2147677	ENTREZGENE
NCBI Gene	107321	ENTREZGENE
PANTHER	LIM DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	LIM DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	LIM DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	LIM DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Lpxn	PhenoGen
PIRSF	Leupaxin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A494B990	ENTREZGENE, UniProtKB/TrEMBL
	LPXN_MOUSE	UniProtKB/Swiss-Prot
	Q8R355	ENTREZGENE, UniProtKB/TrEMBL
	Q99N69	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Mammalian Phenotype